ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart11e03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469697.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1307 Score = 252 bits (127), Expect = 1e-63 Identities = 202/227 (88%) Strand = Plus / Minus Query: 264 tggttagaccaatcagcggcactaccgacgcgagggatccccgagtccttcttggcctcg 323 ||||| ||||| || ||||| || ||||| ||||||||||| |||||||||||||||||| Sbjct: 998 tggttggaccagtctgcggcgctgccgacccgagggatcccggagtccttcttggcctcg 939 Query: 324 ctgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcc 383 |||||||||||| || ||||||| ||||||||||| |||||||| || || ||||| | | Sbjct: 938 ctgtcgaccttgtagttggagccgcacatctggccctggctgtcgacccgcggcacaggc 879 Query: 384 ttcagttcgttcagcggatgctcgaagctctgcagccctccagatgtggtgtagaagcag 443 ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 878 ttcagctcgttcagcgggtgctcgaagctctgcagccctccagaggtggtgtagaagcag 819 Query: 444 cctttggggaatggcgcgaatgagtttccgcaccctgccttgagaag 490 ||||||||||||||||| || ||||| ||||| |||||||||||| Sbjct: 818 cctttggggaatggcgcaaacgagttcccgcaggatgccttgagaag 772
>dbj|AB110189.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 17FPG011 Length = 1129 Score = 252 bits (127), Expect = 1e-63 Identities = 202/227 (88%) Strand = Plus / Minus Query: 264 tggttagaccaatcagcggcactaccgacgcgagggatccccgagtccttcttggcctcg 323 ||||| ||||| || ||||| || ||||| ||||||||||| |||||||||||||||||| Sbjct: 817 tggttggaccagtctgcggcgctgccgacccgagggatcccggagtccttcttggcctcg 758 Query: 324 ctgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcc 383 |||||||||||| || ||||||| ||||||||||| |||||||| || || ||||| | | Sbjct: 757 ctgtcgaccttgtagttggagccgcacatctggccctggctgtcgacccgcggcacaggc 698 Query: 384 ttcagttcgttcagcggatgctcgaagctctgcagccctccagatgtggtgtagaagcag 443 ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 697 ttcagctcgttcagcgggtgctcgaagctctgcagccctccagaggtggtgtagaagcag 638 Query: 444 cctttggggaatggcgcgaatgagtttccgcaccctgccttgagaag 490 ||||||||||||||||| || ||||| ||||| |||||||||||| Sbjct: 637 cctttggggaatggcgcaaacgagttcccgcaggatgccttgagaag 591
>dbj|AK065730.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037C05, full insert sequence Length = 1111 Score = 252 bits (127), Expect = 1e-63 Identities = 202/227 (88%) Strand = Plus / Minus Query: 264 tggttagaccaatcagcggcactaccgacgcgagggatccccgagtccttcttggcctcg 323 ||||| ||||| || ||||| || ||||| ||||||||||| |||||||||||||||||| Sbjct: 820 tggttggaccagtctgcggcgctgccgacccgagggatcccggagtccttcttggcctcg 761 Query: 324 ctgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcc 383 |||||||||||| || ||||||| ||||||||||| |||||||| || || ||||| | | Sbjct: 760 ctgtcgaccttgtagttggagccgcacatctggccctggctgtcgacccgcggcacaggc 701 Query: 384 ttcagttcgttcagcggatgctcgaagctctgcagccctccagatgtggtgtagaagcag 443 ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 700 ttcagctcgttcagcgggtgctcgaagctctgcagccctccagaggtggtgtagaagcag 641 Query: 444 cctttggggaatggcgcgaatgagtttccgcaccctgccttgagaag 490 ||||||||||||||||| || ||||| ||||| |||||||||||| Sbjct: 640 cctttggggaatggcgcaaacgagttcccgcaggatgccttgagaag 594
>dbj|AK060366.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-A05, full insert sequence Length = 1394 Score = 252 bits (127), Expect = 1e-63 Identities = 202/227 (88%) Strand = Plus / Minus Query: 264 tggttagaccaatcagcggcactaccgacgcgagggatccccgagtccttcttggcctcg 323 ||||| ||||| || ||||| || ||||| ||||||||||| |||||||||||||||||| Sbjct: 1101 tggttggaccagtctgcggcgctgccgacccgagggatcccggagtccttcttggcctcg 1042 Query: 324 ctgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcc 383 |||||||||||| || ||||||| ||||||||||| |||||||| || || ||||| | | Sbjct: 1041 ctgtcgaccttgtagttggagccgcacatctggccctggctgtcgacccgcggcacaggc 982 Query: 384 ttcagttcgttcagcggatgctcgaagctctgcagccctccagatgtggtgtagaagcag 443 ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 981 ttcagctcgttcagcgggtgctcgaagctctgcagccctccagaggtggtgtagaagcag 922 Query: 444 cctttggggaatggcgcgaatgagtttccgcaccctgccttgagaag 490 ||||||||||||||||| || ||||| ||||| |||||||||||| Sbjct: 921 cctttggggaatggcgcaaacgagttcccgcaggatgccttgagaag 875
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 212 bits (107), Expect = 8e-52 Identities = 164/183 (89%) Strand = Plus / Plus Query: 264 tggttagaccaatcagcggcactaccgacgcgagggatccccgagtccttcttggcctcg 323 ||||| ||||| || ||||| || ||||| ||||||||||| |||||||||||||||||| Sbjct: 30268652 tggttggaccagtctgcggcgctgccgacccgagggatcccggagtccttcttggcctcg 30268711 Query: 324 ctgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcc 383 |||||||||||| || ||||||| ||||||||||| |||||||| || || ||||| | | Sbjct: 30268712 ctgtcgaccttgtagttggagccgcacatctggccctggctgtcgacccgcggcacaggc 30268771 Query: 384 ttcagttcgttcagcggatgctcgaagctctgcagccctccagatgtggtgtagaagcag 443 ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 30268772 ttcagctcgttcagcgggtgctcgaagctctgcagccctccagaggtggtgtagaagcag 30268831 Query: 444 cct 446 ||| Sbjct: 30268832 cct 30268834 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 444 cctttggggaatggcgcgaatgagtttccgcaccctgccttgagaag 490 ||||||||||||||||| || ||||| ||||| |||||||||||| Sbjct: 30268941 cctttggggaatggcgcaaacgagttcccgcaggatgccttgagaag 30268987 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 gcgtggcacggccttcagtt 390 |||||||||||||||||||| Sbjct: 11394154 gcgtggcacggccttcagtt 11394135
>gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genomic sequence, complete sequence Length = 130359 Score = 212 bits (107), Expect = 8e-52 Identities = 164/183 (89%) Strand = Plus / Plus Query: 264 tggttagaccaatcagcggcactaccgacgcgagggatccccgagtccttcttggcctcg 323 ||||| ||||| || ||||| || ||||| ||||||||||| |||||||||||||||||| Sbjct: 60332 tggttggaccagtctgcggcgctgccgacccgagggatcccggagtccttcttggcctcg 60391 Query: 324 ctgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcc 383 |||||||||||| || ||||||| ||||||||||| |||||||| || || ||||| | | Sbjct: 60392 ctgtcgaccttgtagttggagccgcacatctggccctggctgtcgacccgcggcacaggc 60451 Query: 384 ttcagttcgttcagcggatgctcgaagctctgcagccctccagatgtggtgtagaagcag 443 ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 60452 ttcagctcgttcagcgggtgctcgaagctctgcagccctccagaggtggtgtagaagcag 60511 Query: 444 cct 446 ||| Sbjct: 60512 cct 60514 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 444 cctttggggaatggcgcgaatgagtttccgcaccctgccttgagaag 490 ||||||||||||||||| || ||||| ||||| |||||||||||| Sbjct: 60621 cctttggggaatggcgcaaacgagttcccgcaggatgccttgagaag 60667
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 212 bits (107), Expect = 8e-52 Identities = 164/183 (89%) Strand = Plus / Plus Query: 264 tggttagaccaatcagcggcactaccgacgcgagggatccccgagtccttcttggcctcg 323 ||||| ||||| || ||||| || ||||| ||||||||||| |||||||||||||||||| Sbjct: 30360074 tggttggaccagtctgcggcgctgccgacccgagggatcccggagtccttcttggcctcg 30360133 Query: 324 ctgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcc 383 |||||||||||| || ||||||| ||||||||||| |||||||| || || ||||| | | Sbjct: 30360134 ctgtcgaccttgtagttggagccgcacatctggccctggctgtcgacccgcggcacaggc 30360193 Query: 384 ttcagttcgttcagcggatgctcgaagctctgcagccctccagatgtggtgtagaagcag 443 ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 30360194 ttcagctcgttcagcgggtgctcgaagctctgcagccctccagaggtggtgtagaagcag 30360253 Query: 444 cct 446 ||| Sbjct: 30360254 cct 30360256 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 444 cctttggggaatggcgcgaatgagtttccgcaccctgccttgagaag 490 ||||||||||||||||| || ||||| ||||| |||||||||||| Sbjct: 30360363 cctttggggaatggcgcaaacgagttcccgcaggatgccttgagaag 30360409 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 gcgtggcacggccttcagtt 390 |||||||||||||||||||| Sbjct: 11390917 gcgtggcacggccttcagtt 11390898
>gb|AY105257.1| Zea mays PCO119343 mRNA sequence Length = 1188 Score = 155 bits (78), Expect = 2e-34 Identities = 154/178 (86%), Gaps = 1/178 (0%) Strand = Plus / Minus Query: 311 cttcttggcctcgctgtcgaccttgaaggtggagccacacatctggccttggctgtccac 370 ||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct: 830 cttcttgctctcgctgtcgaccttgaagatggagccgcacatctggccttggctgtccac 771 Query: 371 gcgtggcacggccttcagttcgttcagcggatgctcgaagctctgcag-ccctccagatg 429 ||||||||| ||||| | |||| || ||| ||||||||||||||||| ||| || || | Sbjct: 770 gcgtggcaccgccttgacctcgtgcaacgggtgctcgaagctctgcagccccaccggagg 711 Query: 430 tggtgtagaagcagcctttggggaatggcgcgaatgagtttccgcaccctgccttgag 487 ||||||||||||| ||||| || ||||| ||| | ||||| ||||| |||| |||||| Sbjct: 710 tggtgtagaagcaacctttaggaaatggagcgtacgagttgccgcagcctgtcttgag 653
>gb|BT019109.1| Zea mays clone Contig714.F mRNA sequence Length = 486 Score = 56.0 bits (28), Expect = 1e-04 Identities = 82/100 (82%) Strand = Plus / Minus Query: 325 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 384 |||||||||||||||||| ||| ||||| ||||| |||||| ||||| |||| ||||| Sbjct: 114 tgtcgaccttgaaggtggcgccgcacatggcgccttcgctgtcgacgcgcggcatggcct 55 Query: 385 tcagttcgttcagcggatgctcgaagctctgcagccctcc 424 | || ||||| || ||||||||||||| |||||||| Sbjct: 54 tgagcctgttcatggggtgctcgaagctcttgagccctcc 15
>gb|BT024180.1| Zea mays clone EL01N0417H11 mRNA sequence Length = 1180 Score = 56.0 bits (28), Expect = 1e-04 Identities = 82/100 (82%) Strand = Plus / Minus Query: 325 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 384 |||||||||||||||||| ||| ||||| ||||| |||||| ||||| |||| ||||| Sbjct: 803 tgtcgaccttgaaggtggcgccgcacatggcgccttcgctgtcgacgcgcggcatggcct 744 Query: 385 tcagttcgttcagcggatgctcgaagctctgcagccctcc 424 | || ||||| || ||||||||||||| |||||||| Sbjct: 743 tgagcctgttcatggggtgctcgaagctcttgagccctcc 704
>emb|AL606456.2|OSJN00017 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0017I01, complete sequence Length = 133331 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Plus Query: 325 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 384 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 35495 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 35554 Query: 385 tcagttcgttcagcggatgctcgaagctct 414 |||| ||||| ||| ||||||||||||| Sbjct: 35555 tcagccggttcatcgggtgctcgaagctct 35584
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Plus Query: 325 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 384 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 34729933 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 34729992 Query: 385 tcagttcgttcagcggatgctcgaagctct 414 |||| ||||| ||| ||||||||||||| Sbjct: 34729993 tcagccggttcatcgggtgctcgaagctct 34730022
>dbj|AK121152.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078J16, full insert sequence Length = 1418 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 325 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 384 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 990 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 931 Query: 385 tcagttcgttcagcggatgctcgaagctct 414 |||| ||||| ||| ||||||||||||| Sbjct: 930 tcagccggttcatcgggtgctcgaagctct 901
>dbj|AK120508.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123H02, full insert sequence Length = 644 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 325 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 384 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 224 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 165 Query: 385 tcagttcgttcagcggatgctcgaagctct 414 |||| ||||| ||| ||||||||||||| Sbjct: 164 tcagccggttcatcgggtgctcgaagctct 135
>dbj|AK119666.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-D04, full insert sequence Length = 1278 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 325 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 384 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 850 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 791 Query: 385 tcagttcgttcagcggatgctcgaagctct 414 |||| ||||| ||| ||||||||||||| Sbjct: 790 tcagccggttcatcgggtgctcgaagctct 761
>dbj|AK106133.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-G01, full insert sequence Length = 1279 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 325 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 384 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 855 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 796 Query: 385 tcagttcgttcagcggatgctcgaagctct 414 |||| ||||| ||| ||||||||||||| Sbjct: 795 tcagccggttcatcgggtgctcgaagctct 766
>dbj|AK104376.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G05, full insert sequence Length = 1279 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 325 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 384 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 855 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 796 Query: 385 tcagttcgttcagcggatgctcgaagctct 414 |||| ||||| ||| ||||||||||||| Sbjct: 795 tcagccggttcatcgggtgctcgaagctct 766
>dbj|AK104249.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-G04, full insert sequence Length = 1283 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 325 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 384 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 855 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 796 Query: 385 tcagttcgttcagcggatgctcgaagctct 414 |||| ||||| ||| ||||||||||||| Sbjct: 795 tcagccggttcatcgggtgctcgaagctct 766
>dbj|AK099975.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128E09, full insert sequence Length = 1281 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 325 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 384 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 856 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 797 Query: 385 tcagttcgttcagcggatgctcgaagctct 414 |||| ||||| ||| ||||||||||||| Sbjct: 796 tcagccggttcatcgggtgctcgaagctct 767
>dbj|AK099653.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013065M12, full insert sequence Length = 1284 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 325 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 384 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 856 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 797 Query: 385 tcagttcgttcagcggatgctcgaagctct 414 |||| ||||| ||| ||||||||||||| Sbjct: 796 tcagccggttcatcgggtgctcgaagctct 767
>dbj|AK099368.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052O07, full insert sequence Length = 1284 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 325 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 384 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 856 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 797 Query: 385 tcagttcgttcagcggatgctcgaagctct 414 |||| ||||| ||| ||||||||||||| Sbjct: 796 tcagccggttcatcgggtgctcgaagctct 767
>dbj|AK099087.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006D09, full insert sequence Length = 1275 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 325 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 384 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 851 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 792 Query: 385 tcagttcgttcagcggatgctcgaagctct 414 |||| ||||| ||| ||||||||||||| Sbjct: 791 tcagccggttcatcgggtgctcgaagctct 762
>dbj|AK099009.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116G09, full insert sequence Length = 1284 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 325 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 384 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 856 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 797 Query: 385 tcagttcgttcagcggatgctcgaagctct 414 |||| ||||| ||| ||||||||||||| Sbjct: 796 tcagccggttcatcgggtgctcgaagctct 767
>dbj|AK068608.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157B10, full insert sequence Length = 1500 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 325 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 384 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 1067 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 1008 Query: 385 tcagttcgttcagcggatgctcgaagctct 414 |||| ||||| ||| ||||||||||||| Sbjct: 1007 tcagccggttcatcgggtgctcgaagctct 978
>dbj|AK065314.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002O24, full insert sequence Length = 1284 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 325 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 384 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 856 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 797 Query: 385 tcagttcgttcagcggatgctcgaagctct 414 |||| ||||| ||| ||||||||||||| Sbjct: 796 tcagccggttcatcgggtgctcgaagctct 767
>emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0801D08, complete sequence Length = 103264 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Plus Query: 325 tgtcgaccttgaaggtggagccacacatctggccttggctgtccacgcgtggcacggcct 384 |||||||||||||||||| ||| ||||| ||| | ||||||||| || |||| |||| Sbjct: 72459 tgtcgaccttgaaggtggcgccgcacatgacgccctcgctgtccacccgcggcatcgcct 72518 Query: 385 tcagttcgttcagcggatgctcgaagctct 414 |||| ||||| ||| ||||||||||||| Sbjct: 72519 tcagccggttcatcgggtgctcgaagctct 72548
>gb|BT018507.1| Zea mays clone EL01N0428E04.d mRNA sequence Length = 1088 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Minus Query: 402 tgctcgaagctctgcagccctccagatgtggtgtagaagcagcctttggggaa 454 |||||| ||||| ||||||||| || || ||| ||||| ||||||||||||| Sbjct: 718 tgctcgtagctcctcagccctccggacgtcgtgaagaagaagcctttggggaa 666
>gb|AY107997.1| Zea mays PCO137552 mRNA sequence Length = 867 Score = 42.1 bits (21), Expect = 1.7 Identities = 45/53 (84%) Strand = Plus / Minus Query: 402 tgctcgaagctctgcagccctccagatgtggtgtagaagcagcctttggggaa 454 |||||| ||||| ||||||||| || || ||| ||||| ||||||||||||| Sbjct: 559 tgctcgtagctcctcagccctccggacgtcgtgaagaagaagcctttggggaa 507
>gb|AF001530.1|AF001530 Musa acuminata ripening-associated protein mRNA, partial cds Length = 376 Score = 42.1 bits (21), Expect = 1.7 Identities = 89/112 (79%) Strand = Plus / Minus Query: 354 tggccttggctgtccacgcgtggcacggccttcagttcgttcagcggatgctcgaagctc 413 |||||||||||||| || | ||||| || || || |||||||| |||||||| || || Sbjct: 112 tggccttggctgtcgacccttggcatcgctttgagctcgttcaggggatgctcaaaactn 53 Query: 414 tgcagccctccagatgtggtgtagaagcagcctttggggaatggcgcgaatg 465 |||| || || ||||| || ||||||| |||||||| || ||||| |||| Sbjct: 52 tgcaatcccccggatgtcgtaaagaagcaacctttgggaaagggcgcaaatg 1
>gb|AC161516.9| Mus musculus chromosome 5, clone RP23-130C18, complete sequence Length = 226006 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 acacatctggccttggctgt 366 |||||||||||||||||||| Sbjct: 120458 acacatctggccttggctgt 120439
>gb|AC058822.6| Homo sapiens BAC clone RP11-809N18 from 4, complete sequence Length = 170212 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ctaagccttcactgaacttt 32 |||||||||||||||||||| Sbjct: 61922 ctaagccttcactgaacttt 61941
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 gcgtggcacggccttcagtt 390 |||||||||||||||||||| Sbjct: 17858105 gcgtggcacggccttcagtt 17858124
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 gcgtggcacggccttcagtt 390 |||||||||||||||||||| Sbjct: 19895566 gcgtggcacggccttcagtt 19895547
>gb|AC009364.9| Homo sapiens chromosome 7 clone RP11-348A15, complete sequence Length = 151153 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 tgcagccctccagatgtggt 433 |||||||||||||||||||| Sbjct: 16057 tgcagccctccagatgtggt 16076
>gb|AC134230.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0005J15, complete sequence Length = 159270 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 gcgtggcacggccttcagtt 390 |||||||||||||||||||| Sbjct: 102451 gcgtggcacggccttcagtt 102432
>gb|AC018643.3|AC018643 Human Chromosome 7 clone RP11-297N5, complete sequence Length = 198470 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 tgcagccctccagatgtggt 433 |||||||||||||||||||| Sbjct: 150158 tgcagccctccagatgtggt 150177
>dbj|AP003516.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0047D12 Length = 145981 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 gcgtggcacggccttcagtt 390 |||||||||||||||||||| Sbjct: 118524 gcgtggcacggccttcagtt 118505
>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome Length = 1584804 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 actgaactttatttattgaa 42 |||||||||||||||||||| Sbjct: 1535278 actgaactttatttattgaa 1535259
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 gcgtggcacggccttcagtt 390 |||||||||||||||||||| Sbjct: 17784474 gcgtggcacggccttcagtt 17784493
>emb|AL928744.3|CNS08CBH Oryza sativa chromosome 12, . BAC OSJNBa0041B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 147543 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 gcgtggcacggccttcagtt 390 |||||||||||||||||||| Sbjct: 140401 gcgtggcacggccttcagtt 140382
>emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb0014C10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 142246 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 gcgtggcacggccttcagtt 390 |||||||||||||||||||| Sbjct: 77303 gcgtggcacggccttcagtt 77322 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,029,803 Number of Sequences: 3902068 Number of extensions: 4029803 Number of successful extensions: 73365 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73126 Number of HSP's gapped (non-prelim): 236 length of query: 504 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 482 effective length of database: 17,147,199,772 effective search space: 8264950290104 effective search space used: 8264950290104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
