ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart11e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TILS_GEOKA (Q5L3T3) tRNA(Ile)-lysidine synthase (EC 6.3.4.-) (tR... 30 3.5

>TILS_GEOKA (Q5L3T3) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 464

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 94  SRMVIEAECRYTDILTIEAQSSHSNQRTIFMRERYVHHQLKMLQGEN 234
           SR  IEA CR    + +  +   SN++  + R R+ HH + +L+ EN
Sbjct: 171 SRAEIEAYCRQ---MGLSPRCDPSNEKDDYTRNRFRHHIVPLLRQEN 214


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,968,697
Number of Sequences: 219361
Number of extensions: 1101135
Number of successful extensions: 2581
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2581
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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