ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart11e02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK073064.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033021J15, full insert sequence Length = 1127 Score = 75.8 bits (38), Expect = 1e-10 Identities = 107/130 (82%) Strand = Plus / Minus Query: 285 tctgcatcttacttcatatttgctgctccttcgctctcttacgagccagtgctcgttctc 344 ||||| || |||||||||| |||||| |||| ||| |||| || ||||| |||| ||||| Sbjct: 769 tctgcctcgtacttcatatctgctgcgccttggctttcttccgcgccagagctctttctc 710 Query: 345 tagcagcagcaagtgcatcattactcctcttatagtgctcgtcagtgattggcactggtt 404 | |||||||||||||||||| | | ||||||||||| || || ||||| | |||||| Sbjct: 709 tggcagcagcaagtgcatcagcatttctcttatagtgttcatccgtgatctgtgctggtt 650 Query: 405 gagcattctg 414 ||| |||||| Sbjct: 649 gagtattctg 640 Score = 42.1 bits (21), Expect = 1.7 Identities = 39/45 (86%) Strand = Plus / Minus Query: 436 ggaaacatctgcctctttctcaatagatctagcagctgttgaatc 480 |||||||||||| | |||||| ||||||||||||| | |||||| Sbjct: 576 ggaaacatctgcatttttctcggtagatctagcagcagctgaatc 532
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 67.9 bits (34), Expect = 3e-08 Identities = 106/130 (81%) Strand = Plus / Plus Query: 285 tctgcatcttacttcatatttgctgctccttcgctctcttacgagccagtgctcgttctc 344 ||||| || |||||||||| |||||| | || ||| |||| || ||||| |||| ||||| Sbjct: 21901976 tctgcctcgtacttcatatctgctgcgctttggctttcttccgcgccagagctctttctc 21902035 Query: 345 tagcagcagcaagtgcatcattactcctcttatagtgctcgtcagtgattggcactggtt 404 | |||||||||||||||||| | | ||||||||||| || || ||||| | |||||| Sbjct: 21902036 tggcagcagcaagtgcatcagcatttctcttatagtgttcatccgtgatctgtgctggtt 21902095 Query: 405 gagcattctg 414 ||| |||||| Sbjct: 21902096 gagtattctg 21902105 Score = 42.1 bits (21), Expect = 1.7 Identities = 39/45 (86%) Strand = Plus / Plus Query: 436 ggaaacatctgcctctttctcaatagatctagcagctgttgaatc 480 |||||||||||| | |||||| ||||||||||||| | |||||| Sbjct: 21902169 ggaaacatctgcatttttctcggtagatctagcagcagctgaatc 21902213
>emb|AL606452.2|OSJN00007 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000114_01, complete sequence Length = 127713 Score = 67.9 bits (34), Expect = 3e-08 Identities = 106/130 (81%) Strand = Plus / Plus Query: 285 tctgcatcttacttcatatttgctgctccttcgctctcttacgagccagtgctcgttctc 344 ||||| || |||||||||| |||||| | || ||| |||| || ||||| |||| ||||| Sbjct: 86677 tctgcctcgtacttcatatctgctgcgctttggctttcttccgcgccagagctctttctc 86736 Query: 345 tagcagcagcaagtgcatcattactcctcttatagtgctcgtcagtgattggcactggtt 404 | |||||||||||||||||| | | ||||||||||| || || ||||| | |||||| Sbjct: 86737 tggcagcagcaagtgcatcagcatttctcttatagtgttcatccgtgatctgtgctggtt 86796 Query: 405 gagcattctg 414 ||| |||||| Sbjct: 86797 gagtattctg 86806 Score = 42.1 bits (21), Expect = 1.7 Identities = 39/45 (86%) Strand = Plus / Plus Query: 436 ggaaacatctgcctctttctcaatagatctagcagctgttgaatc 480 |||||||||||| | |||||| ||||||||||||| | |||||| Sbjct: 86870 ggaaacatctgcatttttctcggtagatctagcagcagctgaatc 86914
>dbj|AK101691.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033059K10, full insert sequence Length = 1622 Score = 65.9 bits (33), Expect = 1e-07 Identities = 81/97 (83%) Strand = Plus / Minus Query: 285 tctgcatcttacttcatatttgctgctccttcgctctcttacgagccagtgctcgttctc 344 ||||| || |||||||||| |||||| | || ||| |||| || ||||| |||| ||||| Sbjct: 1250 tctgcctcgtacttcatatctgctgcgctttggctttcttccgcgccagagctctttctc 1191 Query: 345 tagcagcagcaagtgcatcattactcctcttatagtg 381 | |||||||||||||||||| | | ||||||||||| Sbjct: 1190 tggcagcagcaagtgcatcagcatttctcttatagtg 1154 Score = 42.1 bits (21), Expect = 1.7 Identities = 39/45 (86%) Strand = Plus / Minus Query: 436 ggaaacatctgcctctttctcaatagatctagcagctgttgaatc 480 |||||||||||| | |||||| ||||||||||||| | |||||| Sbjct: 1057 ggaaacatctgcatttttctcggtagatctagcagcagctgaatc 1013
>dbj|AK102407.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092M02, full insert sequence Length = 1587 Score = 60.0 bits (30), Expect = 7e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 285 tctgcatcttacttcatatttgctgctccttcgctctcttacgagccagtgctcgttctc 344 ||||| || |||||||||| |||||| | || ||| |||| || ||||| |||| ||||| Sbjct: 1261 tctgcctcgtacttcatatctgctgcgctttggctttcttccgcgccagagctctttctc 1202 Query: 345 tagcagcagcaagtgcat 362 | |||||||||||||||| Sbjct: 1201 tggcagcagcaagtgcat 1184 Score = 42.1 bits (21), Expect = 1.7 Identities = 39/45 (86%) Strand = Plus / Minus Query: 436 ggaaacatctgcctctttctcaatagatctagcagctgttgaatc 480 |||||||||||| | |||||| ||||||||||||| | |||||| Sbjct: 1068 ggaaacatctgcatttttctcggtagatctagcagcagctgaatc 1024
>ref|XM_472610.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 990 Score = 58.0 bits (29), Expect = 3e-05 Identities = 95/117 (81%) Strand = Plus / Minus Query: 298 tcatatttgctgctccttcgctctcttacgagccagtgctcgttctctagcagcagcaag 357 |||||| |||||| | || ||| |||| || ||||| |||| |||||| ||||||||||| Sbjct: 990 tcatatctgctgcgctttggctttcttccgcgccagagctctttctctggcagcagcaag 931 Query: 358 tgcatcattactcctcttatagtgctcgtcagtgattggcactggttgagcattctg 414 ||||||| | | ||||||||||| || || ||||| | ||||||||| |||||| Sbjct: 930 tgcatcagcatttctcttatagtgttcatccgtgatctgtgctggttgagtattctg 874 Score = 42.1 bits (21), Expect = 1.7 Identities = 39/45 (86%) Strand = Plus / Minus Query: 436 ggaaacatctgcctctttctcaatagatctagcagctgttgaatc 480 |||||||||||| | |||||| ||||||||||||| | |||||| Sbjct: 810 ggaaacatctgcatttttctcggtagatctagcagcagctgaatc 766
>gb|AY106057.1| Zea mays PCO097918 mRNA sequence Length = 1026 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Minus Query: 329 gccagtgctcgttctctagcagcagcaagtgc 360 ||||||||||| ||||||||||||||||||| Sbjct: 1026 gccagtgctcgcgctctagcagcagcaagtgc 995
>gb|AY814503.1| Schistosoma japonicum clone SJCHGC00012 unknown mRNA Length = 1131 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 194 gatacgtgcatcatcaactgaa 215 |||||||||||||||||||||| Sbjct: 198 gatacgtgcatcatcaactgaa 177
>gb|AC006840.17|AC006840 Homo sapiens chromosome 4 clone C0422C23, complete sequence Length = 201657 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 aaatattcagtaaatacaatg 60 ||||||||||||||||||||| Sbjct: 159526 aaatattcagtaaatacaatg 159546
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 ctcgttctctagcagcagca 355 |||||||||||||||||||| Sbjct: 3110237 ctcgttctctagcagcagca 3110218
>gb|AC138737.10| Mus musculus chromosome 5, clone RP23-307F20, complete sequence Length = 216064 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 gggagcacaaatattcagtaaata 55 ||||||||||| |||||||||||| Sbjct: 96104 gggagcacaaacattcagtaaata 96081
>gb|AF233439.7| Homo sapiens chromosome 8 clones GS1-24F4, CTD-2629I16 map p23.1, complete sequences Length = 231283 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 tgggagcacaaatattcagt 50 |||||||||||||||||||| Sbjct: 34266 tgggagcacaaatattcagt 34285
>gb|AY507517.1| Xenothallus vulcanicola trnK-psbA intergenic spacer, partial sequence; photosystem II 32 kDa protein (psbA) gene, complete cds; and psbA-trnH intergenic spacer, partial sequence; chloroplast Length = 1445 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 tagatctagcagctgttgaa 478 |||||||||||||||||||| Sbjct: 1190 tagatctagcagctgttgaa 1209
>gb|AY507512.1| Symphyogyna hymenophyllum trnK-psbA intergenic spacer, partial sequence; photosystem II 32 kDa protein (psbA) gene, complete cds; and psbA-trnH intergenic spacer, partial sequence; chloroplast Length = 1485 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 tagatctagcagctgttgaa 478 |||||||||||||||||||| Sbjct: 1215 tagatctagcagctgttgaa 1234
>gb|AC006353.3| Homo sapiens PAC clone RP5-1062J16 from 7, complete sequence Length = 158090 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tatttctcttttttgggagc 37 |||||||||||||||||||| Sbjct: 109240 tatttctcttttttgggagc 109259
>emb|BX248343.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 10/14 Length = 307550 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 ctcgttctctagcagcagca 355 |||||||||||||||||||| Sbjct: 254570 ctcgttctctagcagcagca 254551
>gb|AC138381.10| Mus musculus chromosome 6, clone RP24-328J8, complete sequence Length = 130895 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 ttctggagagcttgtgaagc 429 |||||||||||||||||||| Sbjct: 32022 ttctggagagcttgtgaagc 32003
>emb|AL390728.37| Human DNA sequence from clone RP11-488L18 on chromosome 1 Contains a pseudogene similar to part of fibroblast growth factor receptor 3 (achondroplasia, thanatophoric dwarfism) (FGFR3), the ZNF124 gene for zinc finger protein 124 (HZF-16), a peroxisomal biogenesis factor 5 (PEX5) pseudogene, a zinc finger protein pseudogene, the 3' end of a novel transcript, a heat shock 70kDa protein 8 (HSPA8) pseudogene and five CpG islands, complete sequence Length = 123668 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 155 catcacacagcaaccagaggacta 178 |||||||||||||||||| ||||| Sbjct: 41255 catcacacagcaaccagaagacta 41278
>emb|Z36092.1|SCYBR223C S.cerevisiae chromosome II reading frame ORF YBR223c Length = 5223 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 agtaaatacaatgggctcca 67 |||||||||||||||||||| Sbjct: 2266 agtaaatacaatgggctcca 2285
>emb|BX842580.1| Mycobacterium tuberculosis H37Rv complete genome; segment 9/13 Length = 346051 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 ctcgttctctagcagcagca 355 |||||||||||||||||||| Sbjct: 342482 ctcgttctctagcagcagca 342463
>gb|AF374738.2| Saxifraga hirculus psaB gene, partial sequence; psaB-trnH intergenic spacer region, complete sequence and trnH gene, partial sequence; chloroplast genes for chloroplast products Length = 239 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 tagatctagcagctgttgaa 478 |||||||||||||||||||| Sbjct: 36 tagatctagcagctgttgaa 55
>dbj|AP003603.1| Nostoc sp. PCC 7120 plasmid pCC7120gamma DNA, complete sequence Length = 101965 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 tctctagcagcagcaagtgc 360 |||||||||||||||||||| Sbjct: 67380 tctctagcagcagcaagtgc 67399
>dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome Length = 2694756 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 465 tagcagctgttgaatcttttgatg 488 |||||||| ||||||||||||||| Sbjct: 1228006 tagcagcttttgaatcttttgatg 1227983
>gb|AY734712.1| Symphyogyna marginata trnK-psbA intergenic spacer, partial sequence; photosystem II 32 kDa protein (psbA) gene, complete cds; psbA-trnH intergenic spacer, complete sequence; and tRNA-His (trnH) gene, partial sequence; chloroplast Length = 1491 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 tagatctagcagctgttgaa 478 |||||||||||||||||||| Sbjct: 1231 tagatctagcagctgttgaa 1250
>gb|AY734710.1| Pallavicinia xiphoides trnK-psbA intergenic spacer, partial sequence; photosystem II 32 kDa protein (psbA) gene, complete cds; psbA-trnH intergenic spacer, complete sequence; and tRNA-His (trnH) gene, partial sequence; chloroplast Length = 1518 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 tagatctagcagctgttgaa 478 |||||||||||||||||||| Sbjct: 1239 tagatctagcagctgttgaa 1258
>gb|AY734709.1| Pallavicinia xiphoides trnK-psbA intergenic spacer, partial sequence; photosystem II 32 kDa protein (psbA) gene, complete cds; psbA-trnH intergenic spacer, complete sequence; and tRNA-His (trnH) gene, partial sequence; chloroplast Length = 1495 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 tagatctagcagctgttgaa 478 |||||||||||||||||||| Sbjct: 1232 tagatctagcagctgttgaa 1251
>gb|AY734708.1| Jensenia difformis trnK-psbA intergenic spacer, partial sequence; photosystem II 32 kDa protein (psbA) gene, complete cds; psbA-trnH intergenic spacer, complete sequence; and tRNA-His (trnH) gene, partial sequence; chloroplast Length = 1501 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 tagatctagcagctgttgaa 478 |||||||||||||||||||| Sbjct: 1232 tagatctagcagctgttgaa 1251
>gb|AY734707.1| Jensenia spinosa trnK-psbA intergenic spacer, partial sequence; photosystem II 32 kDa protein (psbA) gene, complete cds; psbA-trnH intergenic spacer, complete sequence; and tRNA-His (trnH) gene, partial sequence; chloroplast Length = 1479 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 tagatctagcagctgttgaa 478 |||||||||||||||||||| Sbjct: 1220 tagatctagcagctgttgaa 1239
>gb|AY734706.1| Jensenia wallisii trnK-psbA intergenic spacer, partial sequence; photosystem II 32 kDa protein (psbA) gene, complete cds; psbA-trnH intergenic spacer, complete sequence; and tRNA-His (trnH) gene, partial sequence; chloroplast Length = 1499 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 tagatctagcagctgttgaa 478 |||||||||||||||||||| Sbjct: 1232 tagatctagcagctgttgaa 1251
>gb|AY734705.1| Jensenia spinosa trnK-psbA intergenic spacer, partial sequence; photosystem II 32 kDa protein (psbA) gene, complete cds; psbA-trnH intergenic spacer, complete sequence; and tRNA-His (trnH) gene, partial sequence; chloroplast Length = 1488 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 tagatctagcagctgttgaa 478 |||||||||||||||||||| Sbjct: 1228 tagatctagcagctgttgaa 1247
>gb|AY734704.1| Jensenia decipiens trnK-psbA intergenic spacer, partial sequence; photosystem II 32 kDa protein (psbA) gene, complete cds; psbA-trnH intergenic spacer, complete sequence; and tRNA-His (trnH) gene, partial sequence; chloroplast Length = 1484 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 tagatctagcagctgttgaa 478 |||||||||||||||||||| Sbjct: 1229 tagatctagcagctgttgaa 1248
>gb|BC094185.1| Xenopus laevis cDNA clone MGC:115023 IMAGE:6862328, complete cds Length = 1934 Score = 40.1 bits (20), Expect = 6.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 211 ctgaaaatgctgcag-ggtgaaaacaaa 237 ||||||||||||||| |||||||||||| Sbjct: 1794 ctgaaaatgctgcagcggtgaaaacaaa 1767
>gb|AC020968.3| Mus musculus chromosome 18 clone RP23-193O23, complete sequence Length = 199704 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tatctgcatcttacttcata 302 |||||||||||||||||||| Sbjct: 188772 tatctgcatcttacttcata 188791
>gb|AC020972.3|AC020972 Mus musculus chromosome 18 clone RP23-6P18, complete sequence Length = 218100 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 tatctgcatcttacttcata 302 |||||||||||||||||||| Sbjct: 190505 tatctgcatcttacttcata 190486
>gb|AY688835.1| Symphyogyna undulata PsbA (psbA) gene, complete cds; chloroplast Length = 1495 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 tagatctagcagctgttgaa 478 |||||||||||||||||||| Sbjct: 1228 tagatctagcagctgttgaa 1247
>gb|AY688829.1| Jensenia connivens PsbA (psbA) gene, complete cds; chloroplast Length = 1496 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 tagatctagcagctgttgaa 478 |||||||||||||||||||| Sbjct: 1225 tagatctagcagctgttgaa 1244
>gb|AY688828.1| Greeneothallus gemmiparus PsbA (psbA) gene, complete cds; chloroplast Length = 1504 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 tagatctagcagctgttgaa 478 |||||||||||||||||||| Sbjct: 1229 tagatctagcagctgttgaa 1248
>gb|AC101349.8| Mus musculus chromosome 6, clone RP23-111E12, complete sequence Length = 196303 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 ttctggagagcttgtgaagc 429 |||||||||||||||||||| Sbjct: 14172 ttctggagagcttgtgaagc 14191
>gb|AD000007.1|MSGY414A Mycobacterium tuberculosis sequence from clone y414a Length = 40121 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 ctcgttctctagcagcagca 355 |||||||||||||||||||| Sbjct: 33497 ctcgttctctagcagcagca 33516
>emb|AL732636.1| Tetraodon DNA sequence from clone XX-C0AA050BF02, complete sequence Length = 133117 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 gcatcatcaactgaaaatgctgca 224 ||||||| |||||||||||||||| Sbjct: 38287 gcatcataaactgaaaatgctgca 38310 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,141,391 Number of Sequences: 3902068 Number of extensions: 5141391 Number of successful extensions: 100861 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 100742 Number of HSP's gapped (non-prelim): 120 length of query: 496 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 474 effective length of database: 17,147,199,772 effective search space: 8127772691928 effective search space used: 8127772691928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
