ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart11d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AZR1_YEAST (P50080) Azole resistance protein 1 31 1.6
2NU5M_ANOGA (P34854) NADH-ubiquinone oxidoreductase chain 5 (EC 1... 31 2.1
3AT11C_HUMAN (Q8NB49) Probable phospholipid-transporting ATPase I... 30 2.8
4VGLM_BUNSH (P04875) M polyprotein precursor [Contains: Glycoprot... 30 3.6
5AT11C_MOUSE (Q9QZW0) Probable phospholipid-transporting ATPase 1... 30 4.7
6RT03_ACACA (P46754) Mitochondrial ribosomal protein S3 29 6.2

>AZR1_YEAST (P50080) Azole resistance protein 1|
          Length = 613

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -3

Query: 160 FHVTLPLGFMYCFVYLLVYLRGSGDY--TSSNVMCFSNNFVLLCRSICVILL 11
           F+V LP+G +  F++L  Y  G   +  T  N+  F + F+ + R++   LL
Sbjct: 224 FYVNLPIGGLAFFLFLFFYNPGLSTFQETMDNIRKFPSQFIEIVRNVAYHLL 275



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>NU5M_ANOGA (P34854) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 580

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = -3

Query: 178 TFFSFVFHVTLPLGFMYCFVYLLVYLRGSGDYTSSNVMCFSNNFVLLCRSICVILLLSL 2
           +FF F F      G   C+ + LVY   +GD+ SS++   +++   +  SIC + ++++
Sbjct: 381 SFFLFFFST----GLTVCYSFRLVYYSMTGDFNSSSLHPLNDSGWTMLFSICFLTVMAV 435



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>AT11C_HUMAN (Q8NB49) Probable phospholipid-transporting ATPase IG (EC 3.6.3.1)|
            (ATPase class I type 11C) (ATPase IG) (ATPase IQ) (ATPase
            class VI type 11C)
          Length = 1132

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -2

Query: 179  YFFFLRIPRYITTWVYVLLCLFVSLFARV 93
            YF F ++   ++TW+ ++L +F+SLF  +
Sbjct: 1057 YFVFAQMLSSVSTWLAIILLIFISLFPEI 1085



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>VGLM_BUNSH (P04875) M polyprotein precursor [Contains: Glycoprotein G2;|
           Nonstructural protein NS-M; Glycoprotein G1]
          Length = 1441

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
 Frame = -2

Query: 185 ISYFFFLRIPRYITTWVYVLLCLFVSL--------FARVGRLYEQQCDVF 60
           I++++F+ I  Y  TW  +++ L + L        F+ +  +Y ++CD++
Sbjct: 354 INFYYFVCIMNYAVTWGLIIIGLLIGLLFKKYQHRFSNLYAMYCEECDMY 403



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>AT11C_MOUSE (Q9QZW0) Probable phospholipid-transporting ATPase 11C (EC 3.6.3.1)|
           (Fragment)
          Length = 347

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -2

Query: 179 YFFFLRIPRYITTWVYVLLCLFVSLFARV 93
           YF F ++   ++TW+ ++L +F+SLF  +
Sbjct: 285 YFVFAQMLCSVSTWLAIILLIFISLFPEI 313



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>RT03_ACACA (P46754) Mitochondrial ribosomal protein S3|
          Length = 298

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 257 FGRLTTLVNLFPVLCVMRDV*CSAISYFFFLRIPRYITTW 138
           F R + L  +F +     +V  + IS FFF+R+ +Y T W
Sbjct: 169 FSRSSFLSKIFIIGLSKMNVNANIISEFFFIRLTQYYTIW 208


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,641,479
Number of Sequences: 219361
Number of extensions: 989688
Number of successful extensions: 3193
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3145
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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