ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart11d10 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015N08, complete sequence Length = 129037 Score = 121 bits (61), Expect = 2e-24 Identities = 115/133 (86%) Strand = Plus / Minus Query: 380 gggctcggtgccgcaccacaacacgccgggcgagggctggcaccaggtgacattgtagtt 439 ||||||| |||||||||| ||||||||| || || ||||||||||||| |||||||| Sbjct: 29686 gggctcgtcgccgcaccacgccacgccgggggacgggcggcaccaggtgacgttgtagtt 29627 Query: 440 gctgtagtaggagatgaacggcgccagcttccagtccgtcttgacgcgcccgccctgcgt 499 || |||||||| || |||||||||| |||||||||| |||||||| || || |||||||| Sbjct: 29626 gcggtagtaggtgacgaacggcgcctgcttccagtcggtcttgacccggcccccctgcgt 29567 Query: 500 tgcccagtcctcc 512 |||||||||||| Sbjct: 29566 cgcccagtcctcc 29554
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 121 bits (61), Expect = 2e-24 Identities = 115/133 (86%) Strand = Plus / Minus Query: 380 gggctcggtgccgcaccacaacacgccgggcgagggctggcaccaggtgacattgtagtt 439 ||||||| |||||||||| ||||||||| || || ||||||||||||| |||||||| Sbjct: 30553978 gggctcgtcgccgcaccacgccacgccgggggacgggcggcaccaggtgacgttgtagtt 30553919 Query: 440 gctgtagtaggagatgaacggcgccagcttccagtccgtcttgacgcgcccgccctgcgt 499 || |||||||| || |||||||||| |||||||||| |||||||| || || |||||||| Sbjct: 30553918 gcggtagtaggtgacgaacggcgcctgcttccagtcggtcttgacccggcccccctgcgt 30553859 Query: 500 tgcccagtcctcc 512 |||||||||||| Sbjct: 30553858 cgcccagtcctcc 30553846 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 455 gaacggcgccagcttccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 |||||||||| || |||||||||||||||||||||||||||||| |||||||| Sbjct: 30516570 gaacggcgcctgcgaccagtccgtcttgacgcgcccgccctgcgtggcccagtc 30516623 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 470 ccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 |||||||||||| || |||||||||||||| |||||||| Sbjct: 32180819 ccagtccgtcttcacccgcccgccctgcgtcgcccagtc 32180781
>ref|XM_473788.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 822 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Minus Query: 455 gaacggcgccagcttccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 |||||||||| || |||||||||||||||||||||||||||||| |||||||| Sbjct: 630 gaacggcgcctgcgaccagtccgtcttgacgcgcccgccctgcgtggcccagtc 577
>emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02, complete sequence Length = 166804 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 455 gaacggcgccagcttccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 |||||||||| || |||||||||||||||||||||||||||||| |||||||| Sbjct: 149947 gaacggcgcctgcgaccagtccgtcttgacgcgcccgccctgcgtggcccagtc 150000
>gb|AF443603.1|AF443603 Oryza sativa xyloglucan endotransglycosylase mRNA, complete cds Length = 1162 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Minus Query: 455 gaacggcgccagcttccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 |||||||||| || |||||||||||||||||||||||||||||| |||||||| Sbjct: 702 gaacggcgcctgcgaccagtccgtcttgacgcgcccgccctgcgtggcccagtc 649
>dbj|AK070734.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062B10, full insert sequence Length = 1109 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Minus Query: 455 gaacggcgccagcttccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 |||||||||| || |||||||||||||||||||||||||||||| |||||||| Sbjct: 720 gaacggcgcctgcgaccagtccgtcttgacgcgcccgccctgcgtggcccagtc 667
>gb|AY103775.1| Zea mays PCO076979 mRNA sequence Length = 1495 Score = 69.9 bits (35), Expect = 8e-09 Identities = 38/39 (97%) Strand = Plus / Minus Query: 470 ccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 |||||||||||||||||||||||||||||| |||||||| Sbjct: 758 ccagtccgtcttgacgcgcccgccctgcgtcgcccagtc 720
>emb|AJ295943.1|FPR295943 Festuca pratensis mRNA for Xet1 protein Length = 1187 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 470 ccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 |||||||||||||||||| ||||||||||| |||||||| Sbjct: 735 ccagtccgtcttgacgcggccgccctgcgtggcccagtc 697
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 470 ccagtccgtcttgacgcgcccgccctgcgttgcccagtcctcc 512 |||||||||||||||||| ||||||||||| ||||| |||||| Sbjct: 28755342 ccagtccgtcttgacgcggccgccctgcgtcgcccactcctcc 28755300 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 469 tccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 ||||||||||||||||||| || |||||||| |||||||| Sbjct: 28773338 tccagtccgtcttgacgcgtccaccctgcgtcgcccagtc 28773377 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 469 tccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 ||||||||| ||||||||| ||||||||||| |||||||| Sbjct: 28750420 tccagtccgccttgacgcggccgccctgcgtcgcccagtc 28750381 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 469 tccagtccgtcttgacgcgcccgccctgcgttgcccagtcctcc 512 ||||||||||||||||||| || |||||||| ||||| |||||| Sbjct: 13232751 tccagtccgtcttgacgcggccaccctgcgtggcccaatcctcc 13232708 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 454 tgaacggcgccagcttccagtccgtcttgacgcgcccgccctgcgttgcccagtcctcc 512 ||||||||||| || |||||||||| | |||||||| |||||||| ||||| |||||| Sbjct: 28762496 tgaacggcgcccgcgaccagtccgtcctcacgcgccccccctgcgtcgcccactcctcc 28762438
>dbj|AB196978.1| Sagittaria pygmaea SpXTH5 mRNA for xyloglucan endotransglucosylase/hydrolase, complete cds Length = 1029 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 470 ccagtccgtcttgacgcgcccgccctgcgttgcccagtcctcc 512 |||||| ||||||||||| ||||||||||| |||||||||||| Sbjct: 715 ccagtcggtcttgacgcgtccgccctgcgtggcccagtcctcc 673
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0028E05 Length = 157631 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 470 ccagtccgtcttgacgcgcccgccctgcgttgcccagtcctcc 512 |||||||||||||||||| ||||||||||| ||||| |||||| Sbjct: 63117 ccagtccgtcttgacgcggccgccctgcgtcgcccactcctcc 63075 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 469 tccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 ||||||||||||||||||| || |||||||| |||||||| Sbjct: 81113 tccagtccgtcttgacgcgtccaccctgcgtcgcccagtc 81152 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 469 tccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 ||||||||| ||||||||| ||||||||||| |||||||| Sbjct: 58195 tccagtccgccttgacgcggccgccctgcgtcgcccagtc 58156 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 454 tgaacggcgccagcttccagtccgtcttgacgcgcccgccctgcgttgcccagtcctcc 512 ||||||||||| || |||||||||| | |||||||| |||||||| ||||| |||||| Sbjct: 70271 tgaacggcgcccgcgaccagtccgtcctcacgcgccccccctgcgtcgcccactcctcc 70213
>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0622F03 Length = 170064 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 470 ccagtccgtcttgacgcgcccgccctgcgttgcccagtcctcc 512 |||||||||||||||||| ||||||||||| ||||| |||||| Sbjct: 155908 ccagtccgtcttgacgcggccgccctgcgtcgcccactcctcc 155866 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 469 tccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 ||||||||| ||||||||| ||||||||||| |||||||| Sbjct: 150986 tccagtccgccttgacgcggccgccctgcgtcgcccagtc 150947 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 454 tgaacggcgccagcttccagtccgtcttgacgcgcccgccctgcgttgcccagtcctcc 512 ||||||||||| || |||||||||| | |||||||| |||||||| ||||| |||||| Sbjct: 163062 tgaacggcgcccgcgaccagtccgtcctcacgcgccccccctgcgtcgcccactcctcc 163004
>gb|AY103552.1| Zea mays PCO075057 mRNA sequence Length = 1380 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 470 ccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 |||||||||||| ||||||||||||||||| |||||||| Sbjct: 804 ccagtccgtcttcacgcgcccgccctgcgtcgcccagtc 766
>gb|AY103891.1| Zea mays PCO065722 mRNA sequence Length = 1280 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 470 ccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 |||||||| ||||||||||||||||||||| |||||||| Sbjct: 740 ccagtccgccttgacgcgcccgccctgcgtggcccagtc 702
>emb|AL732336.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0105C05, complete sequence Length = 62215 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 470 ccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 |||||||||||| ||||||||||||||||| |||||||| Sbjct: 31989 ccagtccgtcttcacgcgcccgccctgcgtcgcccagtc 31951
>gb|BT019084.1| Zea mays clone Contig673.F mRNA sequence Length = 977 Score = 60.0 bits (30), Expect = 7e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 455 gaacggcgccagcttccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 |||||||||| || |||||||| ||||||||| ||||||||||| |||||||| Sbjct: 460 gaacggcgcccgcgcccagtccgccttgacgcggccgccctgcgtggcccagtc 513
>gb|AY106776.1| Zea mays PCO076978 mRNA sequence Length = 974 Score = 60.0 bits (30), Expect = 7e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 455 gaacggcgccagcttccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 |||||||||| || |||||||| ||||||||| ||||||||||| |||||||| Sbjct: 744 gaacggcgcccgcgcccagtccgccttgacgcggccgccctgcgtggcccagtc 691
>gb|BT014685.1| Oryza sativa AK104912 mRNA sequence Length = 807 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 469 tccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 ||||||||| ||||||||| ||||||||||| |||||||| Sbjct: 604 tccagtccgccttgacgcggccgccctgcgtcgcccagtc 565
>emb|AJ295945.1|FPR295945 Festuca pratensis mRNA for Xet3 protein Length = 1205 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 469 tccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 ||||||| ||||||||||| ||||||||||| |||||||| Sbjct: 748 tccagtcggtcttgacgcggccgccctgcgtggcccagtc 709
>gb|AY365421.1| Sesamum indicum xyloglucan endotransglycosylase mRNA, partial cds Length = 494 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 469 tccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 ||||||| |||||||| ||||||||||| ||||||||||| Sbjct: 322 tccagtcagtcttgacccgcccgccctgtgttgcccagtc 283
>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0012F14 Length = 168629 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 469 tccagtccgtcttgacgcgcccgccctgcgttgcccagtcctcc 512 ||||||||||||||||||| || |||||||| ||||| |||||| Sbjct: 149939 tccagtccgtcttgacgcggccaccctgcgtggcccaatcctcc 149896
>dbj|AK105513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-F01, full insert sequence Length = 1253 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 469 tccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 ||||||||||||||||||| || |||||||| |||||||| Sbjct: 719 tccagtccgtcttgacgcgtccaccctgcgtcgcccagtc 680
>dbj|AK104912.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C02, full insert sequence Length = 1208 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 469 tccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 ||||||||| ||||||||| ||||||||||| |||||||| Sbjct: 712 tccagtccgccttgacgcggccgccctgcgtcgcccagtc 673
>dbj|AK066125.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059H08, full insert sequence Length = 1208 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 469 tccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 ||||||||| ||||||||| ||||||||||| |||||||| Sbjct: 712 tccagtccgccttgacgcggccgccctgcgtcgcccagtc 673
>dbj|AK063497.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-D06, full insert sequence Length = 1439 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 469 tccagtccgtcttgacgcgcccgccctgcgttgcccagtcctcc 512 ||||||||||||||||||| || |||||||| ||||| |||||| Sbjct: 967 tccagtccgtcttgacgcggccaccctgcgtggcccaatcctcc 924
>emb|AL606650.5|OSJN00097 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015D13, complete sequence Length = 127135 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 470 ccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 |||||||||||| || |||||||||||||| |||||||| Sbjct: 76508 ccagtccgtcttcacccgcccgccctgcgtcgcccagtc 76470
>dbj|AK105934.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-B05, full insert sequence Length = 1101 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 454 tgaacggcgccagcttccagtccgtcttgacgcgcccgccctgcgttgcccagtcctcc 512 ||||||||||| || |||||||||| | |||||||| |||||||| ||||| |||||| Sbjct: 728 tgaacggcgcccgcgaccagtccgtcctcacgcgccccccctgcgtcgcccactcctcc 670
>dbj|AK099331.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024P08, full insert sequence Length = 1199 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 470 ccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 |||||||||||| || |||||||||||||| |||||||| Sbjct: 730 ccagtccgtcttcacccgcccgccctgcgtcgcccagtc 692
>dbj|AK059277.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-C07, full insert sequence Length = 1279 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 470 ccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 |||||||||||| || |||||||||||||| |||||||| Sbjct: 734 ccagtccgtcttcacccgcccgccctgcgtcgcccagtc 696
>gb|AY098522.1| Ananas comosus xyloglucan endotransglycosylase mRNA, partial cds Length = 742 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 454 tgaacggcgccagcttccagtccgtcttgacgcgcccgccctgcgttgcccagtcctcc 512 ||||||||||| || |||||| ||||| ||| |||||||| |||||||||||||||| Sbjct: 400 tgaacggcgcctgcgaccagtcggtcttcacgagcccgcccctcgttgcccagtcctcc 342
>emb|X93175.1|HVXETXEB H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (XEB) Length = 1226 Score = 48.1 bits (24), Expect = 0.028 Identities = 36/40 (90%) Strand = Plus / Minus Query: 469 tccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 ||||||| |||||||| || ||||||||||| |||||||| Sbjct: 716 tccagtcggtcttgacccggccgccctgcgtggcccagtc 677
>gb|AY589589.1| Triticum aestivum endotransglucosylase/hydrolase XTH5 mRNA, complete cds Length = 1056 Score = 48.1 bits (24), Expect = 0.028 Identities = 36/40 (90%) Strand = Plus / Minus Query: 469 tccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 ||||||| |||||||| || ||||||||||| |||||||| Sbjct: 610 tccagtcggtcttgacccggccgccctgcgtggcccagtc 571
>ref|XM_480875.1| Oryza sativa (japonica cultivar-group), mRNA Length = 906 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Minus Query: 470 ccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 |||||||||||| || | |||||||||||| |||||||| Sbjct: 672 ccagtccgtcttcaccctcccgccctgcgtcgcccagtc 634
>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence Length = 211664 Score = 46.1 bits (23), Expect = 0.11 Identities = 47/55 (85%) Strand = Plus / Plus Query: 69 tttgatttcagacaattcttatatgcagagtaaaaagaaccaacgggagtactac 123 ||||| ||||||||| |||||||||||| |||||| ||| | ||||||||||| Sbjct: 59990 tttgacttcagacaaaacttatatgcagactaaaaaacaccgaagggagtactac 60044
>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (XEA) Length = 1174 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Minus Query: 470 ccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 |||||| ||||||||||| |||||||||| |||||||| Sbjct: 654 ccagtcggtcttgacgcgggcgccctgcgtggcccagtc 616
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Plus Query: 470 ccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 |||||||||||| || | |||||||||||| |||||||| Sbjct: 8378461 ccagtccgtcttcaccctcccgccctgcgtcgcccagtc 8378499
>dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0682A06 Length = 142023 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Plus Query: 470 ccagtccgtcttgacgcgcccgccctgcgttgcccagtc 508 |||||||||||| || | |||||||||||| |||||||| Sbjct: 118570 ccagtccgtcttcaccctcccgccctgcgtcgcccagtc 118608
>gb|AF275895.1| Triticum turgidum subsp. durum microsatellite Dwm148 sequence Length = 145 Score = 44.1 bits (22), Expect = 0.44 Identities = 31/34 (91%) Strand = Plus / Minus Query: 87 ttatatgcagagtaaaaagaaccaacgggagtac 120 ||||||||||||||||||||| || |||||||| Sbjct: 123 ttatatgcagagtaaaaagaaacatagggagtac 90
>gb|AF325198.1|AF325198 Triticum aestivum LRR14 (Lrr14), TAK14 (TAK14), and LRK14 (Lrk14) genes, complete cds; and unknown gene Length = 43606 Score = 44.1 bits (22), Expect = 0.44 Identities = 43/50 (86%) Strand = Plus / Minus Query: 56 aaactttgtaaaatttgatttcagacaattcttatatgcagagtaaaaag 105 ||||||||||||||||||||| | |||| ||| ||| | |||||||||| Sbjct: 31482 aaactttgtaaaatttgatttgacacaaatctaatactcggagtaaaaag 31433
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 taaactttgtaaaatttgatt 75 ||||||||||||||||||||| Sbjct: 28628237 taaactttgtaaaatttgatt 28628257 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 gtggactcggcgggctcggtg 389 ||||||||||||||||||||| Sbjct: 10709977 gtggactcggcgggctcggtg 10709997
>gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence Length = 187621 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 gtggactcggcgggctcggtg 389 ||||||||||||||||||||| Sbjct: 126891 gtggactcggcgggctcggtg 126911
>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion, complete genome Length = 491515 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 290 gcagtagtcgtagataacgtagccc 314 |||||||||||||||| |||||||| Sbjct: 407017 gcagtagtcgtagatagcgtagccc 406993
>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion, complete genome Length = 490673 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 290 gcagtagtcgtagataacgtagccc 314 |||||||||||||||| |||||||| Sbjct: 406193 gcagtagtcgtagatagcgtagccc 406169
>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion, complete genome Length = 490669 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 290 gcagtagtcgtagataacgtagccc 314 |||||||||||||||| |||||||| Sbjct: 406189 gcagtagtcgtagatagcgtagccc 406165
>gb|AY580314.1| Selaginella kraussiana putative xyloglucan endotransglucosylase/hydrolase (XTH1) mRNA, complete cds Length = 849 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 477 gtcttgacgcgcccgccctgcgttgccca 505 ||||| ||||||||||||||||| ||||| Sbjct: 608 gtcttcacgcgcccgccctgcgtcgccca 580
>gb|AF482553.1| Pinguicula pumila rps16 gene, partial intron sequence; chloroplast gene for chloroplast product Length = 810 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 53 tgtaaactttgtaaaatttgatttc 77 |||||||||| |||||||||||||| Sbjct: 256 tgtaaactttttaaaatttgatttc 232
>gb|AF482545.1| Pinguicula caerulea rps16 gene, partial intron sequence; chloroplast gene for chloroplast product Length = 796 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 53 tgtaaactttgtaaaatttgatttc 77 |||||||||| |||||||||||||| Sbjct: 255 tgtaaactttttaaaatttgatttc 231
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 290 gcagtagtcgtagataacgtagccc 314 |||||||||||||||| |||||||| Sbjct: 4639035 gcagtagtcgtagatagcgtagccc 4639059 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 aaactttgtaaaatttgatt 75 |||||||||||||||||||| Sbjct: 14506093 aaactttgtaaaatttgatt 14506112
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 taaactttgtaaaatttgatt 75 ||||||||||||||||||||| Sbjct: 28719561 taaactttgtaaaatttgatt 28719581 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 gtggactcggcgggctcggtg 389 ||||||||||||||||||||| Sbjct: 10708078 gtggactcggcgggctcggtg 10708098
>gb|AC090882.10| Oryza sativa chromosome 3 BAC OSJNBa0014G15 genomic sequence, complete sequence Length = 158839 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 taaactttgtaaaatttgatt 75 ||||||||||||||||||||| Sbjct: 70659 taaactttgtaaaatttgatt 70639
>dbj|AP006176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0681H07 Length = 144722 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 290 gcagtagtcgtagataacgtagccc 314 |||||||||||||||| |||||||| Sbjct: 91904 gcagtagtcgtagatagcgtagccc 91928
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome Length = 490520 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 290 gcagtagtcgtagataacgtagccc 314 |||||||||||||||| |||||||| Sbjct: 406059 gcagtagtcgtagatagcgtagccc 406035
>dbj|D13099.1|RICMT03 Oryza sativa (japonica cultivar-group) mitochondrial gene for tRNA-Arg, complete sequence, clone:pMTVSCT4 Length = 1620 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 290 gcagtagtcgtagataacgtagccc 314 |||||||||||||||| |||||||| Sbjct: 28 gcagtagtcgtagatagcgtagccc 4
>gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene locus, sequence Length = 307015 Score = 40.1 bits (20), Expect = 6.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 85 tcttatatgcagagtaaaaagaaccaacgggagtac 120 |||||||||| |||||||||||| || |||||||| Sbjct: 11358 tcttatatgcggagtaaaaagaaacagagggagtac 11323
>emb|CR790378.10| Zebrafish DNA sequence from clone DKEY-112E17 in linkage group 5, complete sequence Length = 160791 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 55 taaactttgtaaaatttgatttca 78 ||||||||||||||| |||||||| Sbjct: 86880 taaactttgtaaaatctgatttca 86903
>emb|CR383667.11| Zebrafish DNA sequence from clone CH211-229P19 in linkage group 10, complete sequence Length = 121560 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 55 taaactttgtaaaatttgatttca 78 ||||| |||||||||||||||||| Sbjct: 96540 taaacattgtaaaatttgatttca 96563
>emb|AL117334.29|HSJ687F11 Human DNA sequence from clone RP4-687F11 on chromosome 20 Contains the 5' end of the C20orf194 gene for chromosome 20 open reading frame 194, the UBE2V1P1 gene for ubiquitin-conjugating enzyme E2 variant 1 pseudogene 1 and a CpG island, complete sequence Length = 92969 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 taaaatttgatttcagacaa 83 |||||||||||||||||||| Sbjct: 75962 taaaatttgatttcagacaa 75943
>gb|AE008912.1| Salmonella typhimurium LT2, section 216 of 220 of the complete genome Length = 20216 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 cagtggacgatgctgtatagcgaa 155 |||||| ||||||||||||||||| Sbjct: 8064 cagtgggcgatgctgtatagcgaa 8087
>emb|AL627284.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 20/20 Length = 88037 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 cagtggacgatgctgtatagcgaa 155 |||||| ||||||||||||||||| Sbjct: 7126 cagtgggcgatgctgtatagcgaa 7149
>emb|BX323574.12| Zebrafish DNA sequence from clone DKEY-180F8, complete sequence Length = 171724 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 55 taaactttgtaaaatttgatttca 78 ||||||||||||| |||||||||| Sbjct: 107169 taaactttgtaaattttgatttca 107192
>gb|AC117383.4| Homo sapiens 3 BAC RP11-789L4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 194991 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 aaaatttgatttcagacaat 84 |||||||||||||||||||| Sbjct: 148564 aaaatttgatttcagacaat 148583
>gb|AC023926.6| Homo sapiens chromosome 8, clone RP11-9P20, complete sequence Length = 151353 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 87 ttatatgcagagtaaaaagaacca 110 ||||||| |||||||||||||||| Sbjct: 133181 ttatatggagagtaaaaagaacca 133158
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 ctgcaggtcggcgcgcgcct 348 |||||||||||||||||||| Sbjct: 68160 ctgcaggtcggcgcgcgcct 68141
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 40.1 bits (20), Expect = 6.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 69 tttgatttcagacaattcttatatgcagagtaaaaa 104 ||||| ||| ||||| ||||||||||||||||||| Sbjct: 403987 tttgacttccgacaaaacttatatgcagagtaaaaa 404022
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.9 Identities = 38/44 (86%) Strand = Plus / Minus Query: 469 tccagtccgtcttgacgcgcccgccctgcgttgcccagtcctcc 512 |||||||||||||||| | ||| |||||| |||||||||||| Sbjct: 10359916 tccagtccgtcttgaccctccccttctgcgtggcccagtcctcc 10359873
>emb|BX649481.10| Zebrafish DNA sequence from clone CH211-103D13 in linkage group 4, complete sequence Length = 192230 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 55 taaactttgtaaaatttgatttca 78 ||||| |||||||||||||||||| Sbjct: 14445 taaacattgtaaaatttgatttca 14422
>gb|DQ317420.1| Setaria italica KNOTTED1 homeodomain protein (KN1) mRNA, partial cds Length = 1032 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 ctcggcgggctcggtgccgc 393 |||||||||||||||||||| Sbjct: 424 ctcggcgggctcggtgccgc 443
>gb|DQ317418.1| Panicum miliaceum KNOTTED1 homeodomain protein (KN1) mRNA, partial cds Length = 1002 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 ctcggcgggctcggtgccgc 393 |||||||||||||||||||| Sbjct: 430 ctcggcgggctcggtgccgc 449
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 cagtggacgatgctgtatagcgaa 155 |||||| ||||||||||||||||| Sbjct: 4504063 cagtgggcgatgctgtatagcgaa 4504086
>dbj|AP005093.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1294_G06 Length = 115468 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 aaactttgtaaaatttgatt 75 |||||||||||||||||||| Sbjct: 4382 aaactttgtaaaatttgatt 4401
>dbj|AP005398.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0669G10 Length = 133372 Score = 40.1 bits (20), Expect = 6.9 Identities = 38/44 (86%) Strand = Plus / Minus Query: 469 tccagtccgtcttgacgcgcccgccctgcgttgcccagtcctcc 512 |||||||||||||||| | ||| |||||| |||||||||||| Sbjct: 2338 tccagtccgtcttgaccctccccttctgcgtggcccagtcctcc 2295
>dbj|AP004872.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0444A09 Length = 125900 Score = 40.1 bits (20), Expect = 6.9 Identities = 38/44 (86%) Strand = Plus / Minus Query: 469 tccagtccgtcttgacgcgcccgccctgcgttgcccagtcctcc 512 |||||||||||||||| | ||| |||||| |||||||||||| Sbjct: 125726 tccagtccgtcttgaccctccccttctgcgtggcccagtcctcc 125683
>emb|AL953907.19| Zebrafish DNA sequence from clone CH211-229I14, complete sequence Length = 151514 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 gtaaactttgtaaaatttga 73 |||||||||||||||||||| Sbjct: 49823 gtaaactttgtaaaatttga 49842
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 cagtggacgatgctgtatagcgaa 155 |||||| ||||||||||||||||| Sbjct: 4711050 cagtgggcgatgctgtatagcgaa 4711073
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 cagtggacgatgctgtatagcgaa 155 |||||| ||||||||||||||||| Sbjct: 4671791 cagtgggcgatgctgtatagcgaa 4671814
>dbj|AP005365.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB52G8, complete sequence Length = 103221 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 87 ttatatgcagagtaaaaagaacca 110 ||||||| |||||||||||||||| Sbjct: 72536 ttatatggagagtaaaaagaacca 72559
>emb|BX005010.24| Zebrafish DNA sequence from clone DKEY-8F16 in linkage group 17, complete sequence Length = 236557 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 55 taaactttgtaaaatttgatttca 78 ||||||||||||| |||||||||| Sbjct: 146179 taaactttgtaaattttgatttca 146202 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,823,831 Number of Sequences: 3902068 Number of extensions: 3823831 Number of successful extensions: 72500 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 81 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71982 Number of HSP's gapped (non-prelim): 518 length of query: 512 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 489 effective length of database: 17,143,297,704 effective search space: 8383072577256 effective search space used: 8383072577256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
