ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart11d09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474301.1| Oryza sativa (japonica cultivar-group), predic... 192 8e-46
2emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4,... 101 2e-18
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
4emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 101 2e-18
5gb|AY110704.1| Zea mays CL16117_1 mRNA sequence 88 4e-14
6ref|XM_493821.1| Oryza sativa (japonica cultivar-group), predic... 46 0.12
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.12
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
9dbj|AK070255.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.12
10dbj|AK058635.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.12
11dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
12ref|NM_116299.2| Arabidopsis thaliana unknown protein AT4G00740 ... 44 0.48
13gb|BT000151.1| Arabidopsis thaliana Unknown protein (At4g00740) ... 44 0.48
14gb|BT008377.1| Arabidopsis thaliana At4g00740 gene, complete cds 44 0.48
15gb|AY059913.1| Arabidopsis thaliana Unknown protein (At4g00740; ... 44 0.48
16gb|AY059835.1| Arabidopsis thaliana Unknown protein (F15P23.2) m... 44 0.48
17emb|BX827248.1|CNS0A2HD Arabidopsis thaliana Full-length cDNA Co... 44 0.48
18ref|NM_129281.3| Arabidopsis thaliana ADK/ATPADK1; ATP binding /... 42 1.9
19gb|AC125398.4| Mus musculus BAC clone RP24-217G23 from chromosom... 42 1.9
20emb|AL591645.35| Human DNA sequence from clone RP13-971O21 on ch... 42 1.9
21emb|AL162752.2|NMA1Z2491 Neisseria meningitidis serogroup A stra... 42 1.9
22gb|AC005896.3| Arabidopsis thaliana chromosome 2 clone F3G5 map ... 42 1.9
23gb|AY056092.1| Arabidopsis thaliana At2g37250/F3G5.4 mRNA, compl... 42 1.9
24gb|AY052310.1| Arabidopsis thaliana At2g37250/F3G5.4 mRNA, compl... 42 1.9
25gb|AY045694.1| Arabidopsis thaliana At2g37250/F3G5.4 mRNA, compl... 42 1.9
26gb|AE002098.2| Neisseria meningitidis MC58, complete genome 42 1.9
27gb|AY085585.1| Arabidopsis thaliana clone 15831 mRNA, complete s... 42 1.9
28gb|AC103368.7| Mus musculus chromosome 18, clone RP24-131L2, com... 40 7.4
29ref|NM_001007553.1| Homo sapiens cold shock domain containing E1... 40 7.4
30ref|NM_007158.4| Homo sapiens cold shock domain containing E1, R... 40 7.4
31ref|NM_027295.1| Mus musculus RAB28, member RAS oncogene family ... 40 7.4
32gb|BC032446.1| Homo sapiens cold shock domain containing E1, RNA... 40 7.4
33gb|BC017662.1| Homo sapiens cold shock domain containing E1, RNA... 40 7.4
34emb|AL596092.8| Human DNA sequence from clone RP11-351N4 on chro... 40 7.4
35emb|AL096773.6|HS1000E10 Human DNA sequence from clone RP5-1000E... 40 7.4
36emb|CR628337.1| Legionella pneumophila str. Lens complete genome 40 7.4
37gb|AC158920.4| Mus musculus chromosome 5, clone RP24-238C7, comp... 40 7.4
38emb|CR860764.1| Pongo pygmaeus mRNA; cDNA DKFZp459E136 (from clo... 40 7.4
39emb|CR860446.1| Pongo pygmaeus mRNA; cDNA DKFZp459H081 (from clo... 40 7.4
40emb|CR860243.1| Pongo pygmaeus mRNA; cDNA DKFZp469D1619 (from cl... 40 7.4
41gb|AC091960.4| Homo sapiens chromosome 5 clone RP11-450M19, comp... 40 7.4
42emb|CR749431.1| Homo sapiens mRNA; cDNA DKFZp779B0247 (from clon... 40 7.4
43emb|CR749378.1| Homo sapiens mRNA; cDNA DKFZp779J1455 (from clon... 40 7.4
44emb|CR593292.1| full-length cDNA clone CS0DI032YO05 of Placenta ... 40 7.4
45dbj|AK022528.1| Homo sapiens cDNA FLJ12466 fis, clone NT2RM10008... 40 7.4
46dbj|AK022516.1| Homo sapiens cDNA FLJ12454 fis, clone NT2RM10005... 40 7.4
47gb|AY049788.1| Homo sapiens NRAS-related protein (UNR) mRNA, com... 40 7.4
48dbj|AK159493.1| Mus musculus osteoclast-like cell cDNA, RIKEN fu... 40 7.4
49gb|AC008698.6| Homo sapiens chromosome 5 clone CTB-70H11, comple... 40 7.4
50gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 40 7.4
51emb|BX255960.14| Zebrafish DNA sequence from clone DKEY-265E17 i... 40 7.4
52emb|AL928695.23| Zebrafish DNA sequence from clone CH211-217M19 ... 40 7.4
53dbj|AB072746.1| Macaca fascicularis testis cDNA clone:QtsA-16005... 40 7.4
54gb|AF116029.1| Aliolimnatis michaelseni cytochrome c oxidase sub... 40 7.4
55gb|AF077054.1| Homo sapiens unr protein mRNA, complete cds 40 7.4
56dbj|AK213358.1| Mus musculus cDNA, clone:Y2G0128B13, strand:unsp... 40 7.4
57dbj|AK211503.1| Mus musculus cDNA, clone:Y2G0121P16, strand:unsp... 40 7.4
58gb|AC153379.1| Mus musculus 10 BAC RP23-230J20 (Roswell Park Can... 40 7.4
59emb|BX648780.1|HSM808931 Homo sapiens mRNA; cDNA DKFZp686O07132 ... 40 7.4
60emb|BX648561.1|HSM808709 Homo sapiens mRNA; cDNA DKFZp779L1054 (... 40 7.4
61dbj|AP002544.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 7.4
62dbj|AB020692.1| Homo sapiens mRNA for KIAA0885 protein, partial cds 40 7.4
63gb|AY105553.1| Zea mays PCO069350 mRNA sequence 40 7.4
64gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malay... 40 7.4
65gb|AF070542.1|AF070542 Homo sapiens clone 24514 unknown mRNA 40 7.4
66emb|AL953879.7| Zebrafish DNA sequence from clone CH211-151G18, ... 40 7.4
67gb|AC134849.5| Mus musculus BAC clone RP24-207G4 from 9, complet... 40 7.4
68emb|CT010451.9| Mouse DNA sequence from clone RP23-103I7 on chro... 40 7.4
69emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 40 7.4
70gb|BC004580.1| Mus musculus RAB28, member RAS oncogene family, m... 40 7.4 
>ref|XM_474301.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 858

 Score =  192 bits (97), Expect = 8e-46
 Identities = 145/161 (90%)
 Strand = Plus / Minus

                                                                       
Query: 372 tctatattcaaagcttggagcagcttcggccatgattcggggattcctccaggtaaattg 431
           |||| |||||| ||||| || | ||||||||||||||| || |||||||| |||| ||||
Sbjct: 827 tctaaattcaatgcttgcagtaacttcggccatgattctggaattcctcctggtagattg 768

                                                                       
Query: 432 aactccaagagtttcccccgagctctgtagaaatcctccactggttcacacaaatcatgg 491
           |||||||| ||||| || || ||||||||||| ||||||||||| |||||||||||||| 
Sbjct: 767 aactccaatagtttaccacgtgctctgtagaagtcctccactggctcacacaaatcatga 708

                                                    
Query: 492 taaacacgcaatcgctcctttaccacctcttcagtatcatc 532
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 taaacacgcaatcgctcctttaccacctcttcagtatcatc 667
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>emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12,
              complete sequence
          Length = 190432

 Score =  101 bits (51), Expect = 2e-18
 Identities = 96/111 (86%)
 Strand = Plus / Plus

                                                                          
Query: 372    tctatattcaaagcttggagcagcttcggccatgattcggggattcctccaggtaaattg 431
              |||| |||||| ||||| || | ||||||||||||||| || |||||||| |||| ||||
Sbjct: 181991 tctaaattcaatgcttgcagtaacttcggccatgattctggaattcctcctggtagattg 182050

                                                                 
Query: 432    aactccaagagtttcccccgagctctgtagaaatcctccactggttcacac 482
              |||||||| ||||| || || ||||||||||| ||||||||||| ||||||
Sbjct: 182051 aactccaatagtttaccacgtgctctgtagaagtcctccactggctcacac 182101



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 50/51 (98%)
 Strand = Plus / Plus

                                                                 
Query: 482    caaatcatggtaaacacgcaatcgctcctttaccacctcttcagtatcatc 532
              ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 182451 caaatcatgataaacacgcaatcgctcctttaccacctcttcagtatcatc 182501
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  101 bits (51), Expect = 2e-18
 Identities = 96/111 (86%)
 Strand = Plus / Plus

                                                                            
Query: 372      tctatattcaaagcttggagcagcttcggccatgattcggggattcctccaggtaaattg 431
                |||| |||||| ||||| || | ||||||||||||||| || |||||||| |||| ||||
Sbjct: 34270609 tctaaattcaatgcttgcagtaacttcggccatgattctggaattcctcctggtagattg 34270668

                                                                   
Query: 432      aactccaagagtttcccccgagctctgtagaaatcctccactggttcacac 482
                |||||||| ||||| || || ||||||||||| ||||||||||| ||||||
Sbjct: 34270669 aactccaatagtttaccacgtgctctgtagaagtcctccactggctcacac 34270719



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 50/51 (98%)
 Strand = Plus / Plus

                                                                   
Query: 482      caaatcatggtaaacacgcaatcgctcctttaccacctcttcagtatcatc 532
                ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 34271069 caaatcatgataaacacgcaatcgctcctttaccacctcttcagtatcatc 34271119
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>emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0624F09, complete
             sequence
          Length = 95419

 Score =  101 bits (51), Expect = 2e-18
 Identities = 96/111 (86%)
 Strand = Plus / Plus

                                                                         
Query: 372   tctatattcaaagcttggagcagcttcggccatgattcggggattcctccaggtaaattg 431
             |||| |||||| ||||| || | ||||||||||||||| || |||||||| |||| ||||
Sbjct: 53224 tctaaattcaatgcttgcagtaacttcggccatgattctggaattcctcctggtagattg 53283

                                                                
Query: 432   aactccaagagtttcccccgagctctgtagaaatcctccactggttcacac 482
             |||||||| ||||| || || ||||||||||| ||||||||||| ||||||
Sbjct: 53284 aactccaatagtttaccacgtgctctgtagaagtcctccactggctcacac 53334



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 50/51 (98%)
 Strand = Plus / Plus

                                                                
Query: 482   caaatcatggtaaacacgcaatcgctcctttaccacctcttcagtatcatc 532
             ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 53684 caaatcatgataaacacgcaatcgctcctttaccacctcttcagtatcatc 53734
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>gb|AY110704.1| Zea mays CL16117_1 mRNA sequence
          Length = 973

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 93/108 (86%), Gaps = 1/108 (0%)
 Strand = Plus / Plus

                                                                       
Query: 395 cttcggccatgattcggggattcctccaggtaaattgaactccaagagtttcccccgagc 454
           |||||||||||||||||| || || ||||| | |||||||||||  |||||||| || ||
Sbjct: 366 cttcggccatgattcgggtatcccaccaggcagattgaactccagcagtttcccacgtgc 425

                                                           
Query: 455 tctgtag-aaatcctccactggttcacacaaatcatggtaaacacgca 501
           ||||||| || |||||||||||||||  ||||||||| || |||||||
Sbjct: 426 tctgtagcaactcctccactggttcagtcaaatcatgctacacacgca 473
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>ref|XM_493821.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 972

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 387 tggagcagcttcggccatgattcggggattcctccaggtaaat 429
           ||||||||||| ||||| || || |||||||||||||| ||||
Sbjct: 923 tggagcagctttggccaagactcagggattcctccaggcaaat 881
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                          
Query: 387     tggagcagcttcggccatgattcggggattcctccaggtaaat 429
               ||||||||||| ||||| || || |||||||||||||| ||||
Sbjct: 1698986 tggagcagctttggccaagactcagggattcctccaggcaaat 1698944
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                          
Query: 387     tggagcagcttcggccatgattcggggattcctccaggtaaat 429
               ||||||||||| ||||| || || |||||||||||||| ||||
Sbjct: 1698984 tggagcagctttggccaagactcagggattcctccaggcaaat 1698942
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>dbj|AK070255.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043P14, full
           insert sequence
          Length = 1193

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 387 tggagcagcttcggccatgattcggggattcctccaggtaaat 429
           ||||||||||| ||||| || || |||||||||||||| ||||
Sbjct: 908 tggagcagctttggccaagactcagggattcctccaggcaaat 866
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>dbj|AK058635.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-D03, full
           insert sequence
          Length = 383

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 387 tggagcagcttcggccatgattcggggattcctccaggtaaat 429
           ||||||||||| ||||| || || |||||||||||||| ||||
Sbjct: 98  tggagcagctttggccaagactcagggattcctccaggcaaat 56
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>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              clone:P0043E01
          Length = 154128

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                         
Query: 387    tggagcagcttcggccatgattcggggattcctccaggtaaat 429
              ||||||||||| ||||| || || |||||||||||||| ||||
Sbjct: 111449 tggagcagctttggccaagactcagggattcctccaggcaaat 111407
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>ref|NM_116299.2| Arabidopsis thaliana unknown protein AT4G00740 mRNA, complete cds
          Length = 2371

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 473  tggttcacacaaatcatggtaaacac 498
            |||||||||| |||||||||||||||
Sbjct: 1678 tggttcacaccaatcatggtaaacac 1653
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>gb|BT000151.1| Arabidopsis thaliana Unknown protein (At4g00740) mRNA, complete cds
          Length = 1806

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 473  tggttcacacaaatcatggtaaacac 498
            |||||||||| |||||||||||||||
Sbjct: 1494 tggttcacaccaatcatggtaaacac 1469
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>gb|BT008377.1| Arabidopsis thaliana At4g00740 gene, complete cds
          Length = 1803

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 473  tggttcacacaaatcatggtaaacac 498
            |||||||||| |||||||||||||||
Sbjct: 1494 tggttcacaccaatcatggtaaacac 1469
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>gb|AY059913.1| Arabidopsis thaliana Unknown protein (At4g00740; F15P23.2) mRNA,
            complete cds
          Length = 1963

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 473  tggttcacacaaatcatggtaaacac 498
            |||||||||| |||||||||||||||
Sbjct: 1650 tggttcacaccaatcatggtaaacac 1625
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>gb|AY059835.1| Arabidopsis thaliana Unknown protein (F15P23.2) mRNA, complete cds
          Length = 2343

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 473  tggttcacacaaatcatggtaaacac 498
            |||||||||| |||||||||||||||
Sbjct: 1650 tggttcacaccaatcatggtaaacac 1625
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>emb|BX827248.1|CNS0A2HD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS26ZG06 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2364

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 473  tggttcacacaaatcatggtaaacac 498
            |||||||||| |||||||||||||||
Sbjct: 1679 tggttcacaccaatcatggtaaacac 1654
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>ref|NM_129281.3| Arabidopsis thaliana ADK/ATPADK1; ATP binding / nucleotide kinase/
           phosphotransferase, phosphate group as acceptor
           AT2G37250 (ADK/ATPADK1) mRNA, complete cds
          Length = 1309

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 513 accacctcttcagtatcatctgctc 537
           |||||||||||||||||||| ||||
Sbjct: 734 accacctcttcagtatcatcagctc 710
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>gb|AC125398.4| Mus musculus BAC clone RP24-217G23 from chromosome 18, complete sequence
          Length = 166948

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 242    aactacttcctagagatgcca 262
              |||||||||||||||||||||
Sbjct: 122542 aactacttcctagagatgcca 122562
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>emb|AL591645.35| Human DNA sequence from clone RP13-971O21 on chromosome Xp11.1-11.22,
             complete sequence
          Length = 148773

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 34    ttcaaaaggatatttgcagca 54
             |||||||||||||||||||||
Sbjct: 73231 ttcaaaaggatatttgcagca 73251
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>emb|AL162752.2|NMA1Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment
              1/7
          Length = 340806

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 17     tctgcctgcataatgttttca 37
              |||||||||||||||||||||
Sbjct: 322826 tctgcctgcataatgttttca 322806
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>gb|AC005896.3| Arabidopsis thaliana chromosome 2 clone F3G5 map ve018, complete
             sequence
          Length = 119001

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 513   accacctcttcagtatcatctgctc 537
             |||||||||||||||||||| ||||
Sbjct: 12271 accacctcttcagtatcatcagctc 12247
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>gb|AY056092.1| Arabidopsis thaliana At2g37250/F3G5.4 mRNA, complete cds
          Length = 855

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 513 accacctcttcagtatcatctgctc 537
           |||||||||||||||||||| ||||
Sbjct: 680 accacctcttcagtatcatcagctc 656
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>gb|AY052310.1| Arabidopsis thaliana At2g37250/F3G5.4 mRNA, complete cds
          Length = 1298

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 513 accacctcttcagtatcatctgctc 537
           |||||||||||||||||||| ||||
Sbjct: 723 accacctcttcagtatcatcagctc 699
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>gb|AY045694.1| Arabidopsis thaliana At2g37250/F3G5.4 mRNA, complete cds
          Length = 1182

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 513 accacctcttcagtatcatctgctc 537
           |||||||||||||||||||| ||||
Sbjct: 729 accacctcttcagtatcatcagctc 705
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>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 17      tctgcctgcataatgttttca 37
               |||||||||||||||||||||
Sbjct: 2206719 tctgcctgcataatgttttca 2206739
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>gb|AY085585.1| Arabidopsis thaliana clone 15831 mRNA, complete sequence
          Length = 1158

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 513 accacctcttcagtatcatctgctc 537
           |||||||||||||||||||| ||||
Sbjct: 707 accacctcttcagtatcatcagctc 683
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>gb|AC103368.7| Mus musculus chromosome 18, clone RP24-131L2, complete sequence
          Length = 160855

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 509   ctttaccacctcttcagtat 528
             ||||||||||||||||||||
Sbjct: 19549 ctttaccacctcttcagtat 19530
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>ref|NM_001007553.1| Homo sapiens cold shock domain containing E1, RNA-binding (CSDE1),
            transcript variant 1, mRNA
          Length = 4115

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 329  ctcgcaacattatgctgttg 348
            ||||||||||||||||||||
Sbjct: 984  ctcgcaacattatgctgttg 1003
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>ref|NM_007158.4| Homo sapiens cold shock domain containing E1, RNA-binding (CSDE1),
           transcript variant 2, mRNA
          Length = 4041

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 329 ctcgcaacattatgctgttg 348
           ||||||||||||||||||||
Sbjct: 891 ctcgcaacattatgctgttg 910
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>ref|NM_027295.1| Mus musculus RAB28, member RAS oncogene family (Rab28), mRNA
          Length = 1667

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 379  tcaaagcttggagcagcttc 398
            ||||||||||||||||||||
Sbjct: 1177 tcaaagcttggagcagcttc 1158
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>gb|BC032446.1| Homo sapiens cold shock domain containing E1, RNA-binding,
           transcript variant 2, mRNA (cDNA clone MGC:40318
           IMAGE:5111213), complete cds
          Length = 2951

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 329 ctcgcaacattatgctgttg 348
           ||||||||||||||||||||
Sbjct: 873 ctcgcaacattatgctgttg 892
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>gb|BC017662.1| Homo sapiens cold shock domain containing E1, RNA-binding, mRNA
           (cDNA clone IMAGE:3912700), containing frame-shift
           errors
          Length = 3125

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 329 ctcgcaacattatgctgttg 348
           ||||||||||||||||||||
Sbjct: 474 ctcgcaacattatgctgttg 493
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>emb|AL596092.8| Human DNA sequence from clone RP11-351N4 on chromosome 13 Contains part
             of a novel gene (KIAA0774), a glyceraldehyde-3-phosphate
             dehydrogenase (GAPD) pseudogene, a novel gene and a CpG
             island, complete sequence
          Length = 153841

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 13    tttatctgcctgcataatgttttcaaaa 40
             ||||||| |||||||| |||||||||||
Sbjct: 79310 tttatcttcctgcatattgttttcaaaa 79337
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>emb|AL096773.6|HS1000E10 Human DNA sequence from clone RP5-1000E10 on chromosome 1p12-13.3
             Contains the 5' end of the gene for a novel protein
             (FLJ37099), the AMPD1 gene for adenosine monophosphate
             deaminase 1 (isoform M), the NRAS gene for neuroblastoma
             RAS viral (v-ras) oncogene homolog, the gene for
             NRAS-related gene (D1S155E) and the gene for a novel
             protein (FLJ44339), complete sequence
          Length = 140207

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 329   ctcgcaacattatgctgttg 348
             ||||||||||||||||||||
Sbjct: 70603 ctcgcaacattatgctgttg 70622
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>emb|CR628337.1| Legionella pneumophila str. Lens complete genome
          Length = 3345687

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 173     aacttgcgcaatcgatgatc 192
               ||||||||||||||||||||
Sbjct: 3224981 aacttgcgcaatcgatgatc 3225000
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>gb|AC158920.4| Mus musculus chromosome 5, clone RP24-238C7, complete sequence
          Length = 156671

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 379   tcaaagcttggagcagcttc 398
             ||||||||||||||||||||
Sbjct: 61736 tcaaagcttggagcagcttc 61717
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>emb|CR860764.1| Pongo pygmaeus mRNA; cDNA DKFZp459E136 (from clone DKFZp459E136)
          Length = 4041

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 329 ctcgcaacattatgctgttg 348
           ||||||||||||||||||||
Sbjct: 887 ctcgcaacattatgctgttg 906
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>emb|CR860446.1| Pongo pygmaeus mRNA; cDNA DKFZp459H081 (from clone DKFZp459H081)
          Length = 4025

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 329 ctcgcaacattatgctgttg 348
           ||||||||||||||||||||
Sbjct: 870 ctcgcaacattatgctgttg 889
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>emb|CR860243.1| Pongo pygmaeus mRNA; cDNA DKFZp469D1619 (from clone DKFZp469D1619)
          Length = 3462

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 329 ctcgcaacattatgctgttg 348
           ||||||||||||||||||||
Sbjct: 717 ctcgcaacattatgctgttg 736
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>gb|AC091960.4| Homo sapiens chromosome 5 clone RP11-450M19, complete sequence
          Length = 172689

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    gcataatgttttcaaaagga 43
             ||||||||||||||||||||
Sbjct: 72099 gcataatgttttcaaaagga 72118
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>emb|CR749431.1| Homo sapiens mRNA; cDNA DKFZp779B0247 (from clone DKFZp779B0247)
          Length = 4168

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 329  ctcgcaacattatgctgttg 348
            ||||||||||||||||||||
Sbjct: 1017 ctcgcaacattatgctgttg 1036
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>emb|CR749378.1| Homo sapiens mRNA; cDNA DKFZp779J1455 (from clone DKFZp779J1455)
          Length = 4188

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 329  ctcgcaacattatgctgttg 348
            ||||||||||||||||||||
Sbjct: 1035 ctcgcaacattatgctgttg 1054
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>emb|CR593292.1| full-length cDNA clone CS0DI032YO05 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1068

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 329 ctcgcaacattatgctgttg 348
           ||||||||||||||||||||
Sbjct: 228 ctcgcaacattatgctgttg 247
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>dbj|AK022528.1| Homo sapiens cDNA FLJ12466 fis, clone NT2RM1000826, highly similar
           to UNR PROTEIN
          Length = 3206

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 329 ctcgcaacattatgctgttg 348
           ||||||||||||||||||||
Sbjct: 453 ctcgcaacattatgctgttg 472
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>dbj|AK022516.1| Homo sapiens cDNA FLJ12454 fis, clone NT2RM1000555, highly similar
           to UNR PROTEIN
          Length = 3206

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 329 ctcgcaacattatgctgttg 348
           ||||||||||||||||||||
Sbjct: 453 ctcgcaacattatgctgttg 472
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>gb|AY049788.1| Homo sapiens NRAS-related protein (UNR) mRNA, complete cds
          Length = 2537

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 329 ctcgcaacattatgctgttg 348
           ||||||||||||||||||||
Sbjct: 440 ctcgcaacattatgctgttg 459
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>dbj|AK159493.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
            library, clone:I420021I10 product:RAB28, member RAS
            oncogene family, full insert sequence
          Length = 1631

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 379  tcaaagcttggagcagcttc 398
            ||||||||||||||||||||
Sbjct: 1178 tcaaagcttggagcagcttc 1159
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>gb|AC008698.6| Homo sapiens chromosome 5 clone CTB-70H11, complete sequence
          Length = 76487

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 24  gcataatgttttcaaaagga 43
           ||||||||||||||||||||
Sbjct: 139 gcataatgttttcaaaagga 120
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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 22      ctgcataatgttttcaaaaggata 45
               ||||||||| ||||||||||||||
Sbjct: 4830616 ctgcataatattttcaaaaggata 4830593
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>emb|BX255960.14| Zebrafish DNA sequence from clone DKEY-265E17 in linkage group 23,
             complete sequence
          Length = 172219

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    ataatgttttcaaaaggata 45
             ||||||||||||||||||||
Sbjct: 62246 ataatgttttcaaaaggata 62265
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>emb|AL928695.23| Zebrafish DNA sequence from clone CH211-217M19 in linkage group 16,
             complete sequence
          Length = 215878

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   aggctacaaatacataatac 316
             ||||||||||||||||||||
Sbjct: 76203 aggctacaaatacataatac 76184
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>dbj|AB072746.1| Macaca fascicularis testis cDNA clone:QtsA-16005, similar to human
           upstream of NRAS (UNR),isoform 2, mRNA, NM_007158.2
          Length = 2027

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 329 ctcgcaacattatgctgttg 348
           ||||||||||||||||||||
Sbjct: 857 ctcgcaacattatgctgttg 876
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>gb|AF116029.1| Aliolimnatis michaelseni cytochrome c oxidase subunit I gene,
           partial cds; mitochondrial
          Length = 651

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 atggccctgaatgaactact 248
           ||||||||||||||||||||
Sbjct: 376 atggccctgaatgaactact 357
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>gb|AF077054.1| Homo sapiens unr protein mRNA, complete cds
          Length = 3582

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 329 ctcgcaacattatgctgttg 348
           ||||||||||||||||||||
Sbjct: 845 ctcgcaacattatgctgttg 864
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>dbj|AK213358.1| Mus musculus cDNA, clone:Y2G0128B13, strand:unspecified
          Length = 363

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 379 tcaaagcttggagcagcttc 398
           ||||||||||||||||||||
Sbjct: 147 tcaaagcttggagcagcttc 128
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>dbj|AK211503.1| Mus musculus cDNA, clone:Y2G0121P16, strand:unspecified
          Length = 396

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 379 tcaaagcttggagcagcttc 398
           ||||||||||||||||||||
Sbjct: 147 tcaaagcttggagcagcttc 128
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>gb|AC153379.1| Mus musculus 10 BAC RP23-230J20 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 174195

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 361    tatcaggatcttctatattc 380
              ||||||||||||||||||||
Sbjct: 143549 tatcaggatcttctatattc 143568
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>emb|BX648780.1|HSM808931 Homo sapiens mRNA; cDNA DKFZp686O07132 (from clone DKFZp686O07132)
          Length = 4021

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 329 ctcgcaacattatgctgttg 348
           ||||||||||||||||||||
Sbjct: 872 ctcgcaacattatgctgttg 891
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>emb|BX648561.1|HSM808709 Homo sapiens mRNA; cDNA DKFZp779L1054 (from clone DKFZp779L1054)
          Length = 3523

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 329 ctcgcaacattatgctgttg 348
           ||||||||||||||||||||
Sbjct: 775 ctcgcaacattatgctgttg 794
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>dbj|AP002544.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBL20
          Length = 35301

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 9     aatatttatctgcctgcataatgt 32
             |||||||||||| |||||||||||
Sbjct: 27977 aatatttatctgtctgcataatgt 27954
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>dbj|AB020692.1| Homo sapiens mRNA for KIAA0885 protein, partial cds
          Length = 4076

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 329 ctcgcaacattatgctgttg 348
           ||||||||||||||||||||
Sbjct: 945 ctcgcaacattatgctgttg 964
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>gb|AY105553.1| Zea mays PCO069350 mRNA sequence
          Length = 740

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 513 accacctcttcagtatcatctgctctggtaat 544
           ||||||||||| |||||||| |||| ||||||
Sbjct: 154 accacctcttcggtatcatcagctcgggtaat 123
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>gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome
          Length = 1080084

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 513    accacctcttcagtatcatc 532
              ||||||||||||||||||||
Sbjct: 982563 accacctcttcagtatcatc 982544
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>gb|AF070542.1|AF070542 Homo sapiens clone 24514 unknown mRNA
          Length = 1511

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 329 ctcgcaacattatgctgttg 348
           ||||||||||||||||||||
Sbjct: 535 ctcgcaacattatgctgttg 554
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>emb|AL953879.7| Zebrafish DNA sequence from clone CH211-151G18, complete sequence
          Length = 142739

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     ataatgttttcaaaaggata 45
              ||||||||||||||||||||
Sbjct: 141040 ataatgttttcaaaaggata 141059
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>gb|AC134849.5| Mus musculus BAC clone RP24-207G4 from 9, complete sequence
          Length = 151630

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 516   acctcttcagtatcatctgc 535
             ||||||||||||||||||||
Sbjct: 74906 acctcttcagtatcatctgc 74925
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>emb|CT010451.9| Mouse DNA sequence from clone RP23-103I7 on chromosome 9, complete
             sequence
          Length = 214871

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 516   acctcttcagtatcatctgc 535
             ||||||||||||||||||||
Sbjct: 82349 acctcttcagtatcatctgc 82330
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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 10     atatttatctgcctgcataatgttttca 37
              |||||| |||||||||||||| ||||||
Sbjct: 962689 atatttttctgcctgcataatattttca 962716
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>gb|BC004580.1| Mus musculus RAB28, member RAS oncogene family, mRNA (cDNA clone
            MGC:8039 IMAGE:3587008), complete cds
          Length = 1667

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 379  tcaaagcttggagcagcttc 398
            ||||||||||||||||||||
Sbjct: 1177 tcaaagcttggagcagcttc 1158


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,804,900
Number of Sequences: 3902068
Number of extensions: 4804900
Number of successful extensions: 84342
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84064
Number of HSP's gapped (non-prelim): 277
length of query: 548
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 525
effective length of database: 17,143,297,704
effective search space: 9000231294600
effective search space used: 9000231294600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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