ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart11d08 |
|---|---|
| Clone Library Name | barley_pub |
>HPPD_HORVU (O48604) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid oxidase) Length = 434 Score = 140 bits (354), Expect = 1e-33 Identities = 73/82 (89%), Positives = 73/82 (89%) Frame = -1 Query: 484 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQRIGCMEKDERGEEYQXXXXXXXXXGNFSEL 305 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQRIGCMEKDERGEEYQ GNFSEL Sbjct: 353 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQRIGCMEKDERGEEYQKGGCGGFGKGNFSEL 412 Query: 304 FKSIEDYEKSLEAKQSAAVQGS 239 FKSIEDYEKSLEAKQSAAVQGS Sbjct: 413 FKSIEDYEKSLEAKQSAAVQGS 434
>HPPD_ARATH (P93836) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid oxidase) Length = 445 Score = 112 bits (279), Expect = 7e-25 Identities = 54/75 (72%), Positives = 62/75 (82%) Frame = -1 Query: 484 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQRIGCMEKDERGEEYQXXXXXXXXXGNFSEL 305 LVDRDDQG LLQIFTKP+GDRPT+F+E+IQR+GCM KDE G+ YQ GNFSEL Sbjct: 368 LVDRDDQGTLLQIFTKPLGDRPTIFIEIIQRVGCMMKDEEGKAYQSGGCGGFGKGNFSEL 427 Query: 304 FKSIEDYEKSLEAKQ 260 FKSIE+YEK+LEAKQ Sbjct: 428 FKSIEEYEKTLEAKQ 442
>HPPD_DAUCA (O23920) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid oxidase) Length = 442 Score = 111 bits (278), Expect = 9e-25 Identities = 55/75 (73%), Positives = 62/75 (82%) Frame = -1 Query: 484 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQRIGCMEKDERGEEYQXXXXXXXXXGNFSEL 305 LVDRDDQG LLQIFTKPVGDRPTLF+E+IQR+GCM KD+ G+ YQ GNFSEL Sbjct: 361 LVDRDDQGTLLQIFTKPVGDRPTLFIEIIQRVGCMLKDDAGQMYQKGGCGGFGKGNFSEL 420 Query: 304 FKSIEDYEKSLEAKQ 260 FKSIE+YEK+LEAKQ Sbjct: 421 FKSIEEYEKTLEAKQ 435
>HPPD_SOLSC (Q9ARF9) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid oxidase) Length = 436 Score = 108 bits (271), Expect = 6e-24 Identities = 53/74 (71%), Positives = 60/74 (81%) Frame = -1 Query: 484 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQRIGCMEKDERGEEYQXXXXXXXXXGNFSEL 305 L+DRDDQG LLQIFTKPVGDRPTLF+E+IQR+GCM KDE G+ YQ GNFSEL Sbjct: 355 LIDRDDQGTLLQIFTKPVGDRPTLFIEIIQRVGCMMKDEEGKMYQKGGCGGFGKGNFSEL 414 Query: 304 FKSIEDYEKSLEAK 263 FKSIE+YEK LE+K Sbjct: 415 FKSIEEYEKMLESK 428
>HPPD_STRCO (Q9S2F4) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) Length = 381 Score = 55.8 bits (133), Expect = 6e-08 Identities = 33/65 (50%), Positives = 38/65 (58%) Frame = -1 Query: 484 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQRIGCMEKDERGEEYQXXXXXXXXXGNFSEL 305 LVDRD+ G LLQIFTKPV DRPT+F EMI+R G M GNF L Sbjct: 323 LVDRDEDGYLLQIFTKPVQDRPTVFFEMIERHGSM---------------GFGKGNFKAL 367 Query: 304 FKSIE 290 F++IE Sbjct: 368 FEAIE 372
>HPPD_BRARE (Q6TGZ5) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid oxidase) Length = 397 Score = 53.9 bits (128), Expect = 2e-07 Identities = 26/31 (83%), Positives = 28/31 (90%) Frame = -1 Query: 484 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQR 392 LVD DD+G LLQIFTKPV DRPTLFLE+IQR Sbjct: 324 LVDFDDKGYLLQIFTKPVQDRPTLFLEVIQR 354
>HPPD_HUMAN (P32754) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid oxidase) Length = 392 Score = 53.9 bits (128), Expect = 2e-07 Identities = 33/66 (50%), Positives = 41/66 (62%) Frame = -1 Query: 484 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQRIGCMEKDERGEEYQXXXXXXXXXGNFSEL 305 LVD D++G LLQIFTKPV DRPTLFLE+IQR + +G GNF+ L Sbjct: 322 LVDYDEKGYLLQIFTKPVQDRPTLFLEVIQR-----HNHQG----------FGAGNFNSL 366 Query: 304 FKSIED 287 FK+ E+ Sbjct: 367 FKAFEE 372
>HPPD_XENTR (Q5BKL0) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid oxidase) Length = 394 Score = 53.1 bits (126), Expect = 4e-07 Identities = 25/31 (80%), Positives = 28/31 (90%) Frame = -1 Query: 484 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQR 392 LVD DD+G LLQIFTKP+ DRPTLFLE+IQR Sbjct: 324 LVDYDDKGYLLQIFTKPMQDRPTLFLEVIQR 354
>HPPD_RAT (P32755) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (4-hydroxyphenylpyruvic acid oxidase) (HPPDase) (F protein) (F Alloantigen) Length = 392 Score = 52.8 bits (125), Expect = 5e-07 Identities = 32/66 (48%), Positives = 41/66 (62%) Frame = -1 Query: 484 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQRIGCMEKDERGEEYQXXXXXXXXXGNFSEL 305 LVD D++G LLQIFTKP+ DRPTLFLE+IQR + +G GNF+ L Sbjct: 322 LVDYDEKGYLLQIFTKPMQDRPTLFLEVIQR-----HNHQG----------FGAGNFNSL 366 Query: 304 FKSIED 287 FK+ E+ Sbjct: 367 FKAFEE 372
>HPPD_MOUSE (P49429) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (4-hydroxyphenylpyruvic acid oxidase) (HPPDase) (F protein) (F Alloantigen) Length = 392 Score = 52.8 bits (125), Expect = 5e-07 Identities = 32/66 (48%), Positives = 41/66 (62%) Frame = -1 Query: 484 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQRIGCMEKDERGEEYQXXXXXXXXXGNFSEL 305 LVD D++G LLQIFTKP+ DRPTLFLE+IQR + +G GNF+ L Sbjct: 322 LVDYDEKGYLLQIFTKPMQDRPTLFLEVIQR-----HNHQG----------FGAGNFNSL 366 Query: 304 FKSIED 287 FK+ E+ Sbjct: 367 FKAFEE 372
>HPPD_BOVIN (Q5EA20) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid oxidase) Length = 392 Score = 52.8 bits (125), Expect = 5e-07 Identities = 32/66 (48%), Positives = 41/66 (62%) Frame = -1 Query: 484 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQRIGCMEKDERGEEYQXXXXXXXXXGNFSEL 305 LVD D++G LLQIFTKP+ DRPTLFLE+IQR + +G GNF+ L Sbjct: 322 LVDYDEKGYLLQIFTKPMQDRPTLFLEVIQR-----HNHQG----------FGAGNFNSL 366 Query: 304 FKSIED 287 FK+ E+ Sbjct: 367 FKAFEE 372
>HPPD_STRAW (Q53586) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) Length = 381 Score = 52.8 bits (125), Expect = 5e-07 Identities = 31/65 (47%), Positives = 37/65 (56%) Frame = -1 Query: 484 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQRIGCMEKDERGEEYQXXXXXXXXXGNFSEL 305 L DRD+ G LLQIFTKPV DRPT+F E+I+R G M GNF L Sbjct: 323 LADRDEDGYLLQIFTKPVQDRPTVFFEIIERHGSM---------------GFGKGNFKAL 367 Query: 304 FKSIE 290 F++IE Sbjct: 368 FEAIE 372
>HPPD_PIG (Q02110) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid oxidase) Length = 392 Score = 52.4 bits (124), Expect = 6e-07 Identities = 31/69 (44%), Positives = 43/69 (62%) Frame = -1 Query: 484 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQRIGCMEKDERGEEYQXXXXXXXXXGNFSEL 305 LVD D++G LLQIFTKP+ DRPT+FLE+IQR + +G GNF+ L Sbjct: 322 LVDYDEKGYLLQIFTKPMQDRPTVFLEVIQR-----NNHQG----------FGAGNFNSL 366 Query: 304 FKSIEDYEK 278 FK+ E+ ++ Sbjct: 367 FKAFEEEQE 375
>HPPD_TETTH (Q27203) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid oxidase) (F-antigen homolog) (TF-AG) Length = 404 Score = 50.8 bits (120), Expect = 2e-06 Identities = 24/31 (77%), Positives = 27/31 (87%) Frame = -1 Query: 484 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQR 392 LVD D++G LLQIFTKPV DRPTLF E+IQR Sbjct: 338 LVDYDEKGYLLQIFTKPVEDRPTLFYEIIQR 368
>HPPD_CAEBR (Q60Y65) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid oxidase) Length = 393 Score = 50.1 bits (118), Expect = 3e-06 Identities = 32/65 (49%), Positives = 39/65 (60%) Frame = -1 Query: 484 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQRIGCMEKDERGEEYQXXXXXXXXXGNFSEL 305 LVD D+ G LLQIF+KP DRPTLFLE+IQR ++ +G GNF L Sbjct: 324 LVDFDENGYLLQIFSKPCQDRPTLFLEIIQR-----QNHQG----------FGAGNFKAL 368 Query: 304 FKSIE 290 F+SIE Sbjct: 369 FESIE 373
>HPPD_CAEEL (Q22633) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid oxidase) Length = 393 Score = 49.7 bits (117), Expect = 4e-06 Identities = 32/65 (49%), Positives = 38/65 (58%) Frame = -1 Query: 484 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQRIGCMEKDERGEEYQXXXXXXXXXGNFSEL 305 LVD D+ G LLQIF+KP DRPTLFLE+IQR ++ G GNF L Sbjct: 324 LVDFDENGYLLQIFSKPCQDRPTLFLEIIQR-----QNHEG----------FGAGNFKAL 368 Query: 304 FKSIE 290 F+SIE Sbjct: 369 FESIE 373
>YBWL_CAEEL (Q18347) Hypothetical protein C31H2.4 in chromosome X| Length = 364 Score = 47.4 bits (111), Expect = 2e-05 Identities = 21/31 (67%), Positives = 27/31 (87%) Frame = -1 Query: 484 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQR 392 L+D D+ G LLQIF+KP+ DRPTLF+E+IQR Sbjct: 305 LMDFDENGYLLQIFSKPLQDRPTLFIEIIQR 335
>HPPD_NEUCR (Q872T7) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) Length = 412 Score = 47.0 bits (110), Expect = 3e-05 Identities = 20/31 (64%), Positives = 27/31 (87%) Frame = -1 Query: 484 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQR 392 L+D D+ G LLQ+FTKP+ DRPT+F+E+IQR Sbjct: 354 LIDYDEGGYLLQLFTKPLMDRPTVFIEIIQR 384
>HPPD_MYCGR (O42764) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) Length = 419 Score = 46.6 bits (109), Expect = 3e-05 Identities = 20/31 (64%), Positives = 27/31 (87%) Frame = -1 Query: 484 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQR 392 L+D D+ G LLQ+FTKP+ DRPT+F+E+IQR Sbjct: 361 LIDFDEGGYLLQLFTKPLMDRPTVFIEIIQR 391
>HPPD_MAGGR (Q96X22) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) Length = 419 Score = 46.6 bits (109), Expect = 3e-05 Identities = 29/65 (44%), Positives = 39/65 (60%) Frame = -1 Query: 484 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQRIGCMEKDERGEEYQXXXXXXXXXGNFSEL 305 L+D D+ G LLQ+FT+P+ DRPT+F+E+IQR E D G GNF L Sbjct: 361 LIDYDEGGYLLQLFTRPLMDRPTVFIEIIQR---NEFDGFG------------AGNFKSL 405 Query: 304 FKSIE 290 F++IE Sbjct: 406 FEAIE 410
>HPPD_YARLI (Q6CDR5) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) Length = 394 Score = 46.6 bits (109), Expect = 3e-05 Identities = 20/31 (64%), Positives = 27/31 (87%) Frame = -1 Query: 484 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQR 392 L+D D+ G LLQ+FTKP+ DRPT+F+E+IQR Sbjct: 336 LIDFDEGGYLLQLFTKPLMDRPTVFIEIIQR 366
>HPPD2_ASPFU (Q4WPV8) Probable 4-hydroxyphenylpyruvate dioxygenase 2 (EC| 1.13.11.27) (4HPPD 2) (HPD 2) (HPPDase 2) Length = 406 Score = 44.7 bits (104), Expect = 1e-04 Identities = 21/31 (67%), Positives = 27/31 (87%) Frame = -1 Query: 484 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQR 392 LVD D++G LLQIF+K V DRPT+F+E+IQR Sbjct: 348 LVDFDEKGYLLQIFSKHVLDRPTVFIEVIQR 378
>HPPD_COCIM (Q00415) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)| (4HPPD) (HPD) (HPPDase) (T-cell reactive protein) Length = 399 Score = 43.9 bits (102), Expect = 2e-04 Identities = 19/31 (61%), Positives = 26/31 (83%) Frame = -1 Query: 484 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQR 392 L+D D+ G LLQ+FTK + DRPT+F+E+IQR Sbjct: 340 LIDFDENGYLLQLFTKHLMDRPTVFIEIIQR 370
>HPPD1_ASPFU (Q4WHU1) Probable 4-hydroxyphenylpyruvate dioxygenase 1 (EC| 1.13.11.27) (4HPPD 1) (HPD 1) (HPPDase 1) Length = 403 Score = 43.1 bits (100), Expect = 4e-04 Identities = 19/31 (61%), Positives = 26/31 (83%) Frame = -1 Query: 484 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQR 392 L+D D+ G LLQ+FTK + DRPT+F+E+IQR Sbjct: 344 LIDFDEGGYLLQLFTKHLMDRPTVFIEIIQR 374
>MELA_SHECO (P23996) Protein melA| Length = 346 Score = 32.7 bits (73), Expect = 0.52 Identities = 27/65 (41%), Positives = 34/65 (52%) Frame = -1 Query: 484 LVDRDDQGVLLQIFTKPVGDRPTLFLEMIQRIGCMEKDERGEEYQXXXXXXXXXGNFSEL 305 LVD D+ G LLQIFTK + +F+E+IQR K+ G GNF L Sbjct: 290 LVDGDEDGYLLQIFTKNLFG--PIFIEIIQR-----KNNLG----------FGEGNFKAL 332 Query: 304 FKSIE 290 F+SIE Sbjct: 333 FESIE 337
>Y090_SYNY3 (Q55810) Hypothetical protein slr0090| Length = 339 Score = 32.3 bits (72), Expect = 0.67 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Frame = -1 Query: 484 LVDRDDQG--VLLQIFTKPVGDRPTLFLEMIQRIGCMEKDERGEEYQXXXXXXXXXGNFS 311 L D+D+ G +LLQIF++P TLF E+I+R + +G NF Sbjct: 278 LDDQDNTGERLLLQIFSQPCYGVGTLFWEIIERRHRAKGFGQG--------------NFQ 323 Query: 310 ELFKSIEDYEKSLE 269 L++++E EK LE Sbjct: 324 ALYEAVETLEKQLE 337
>ADRB3_CANFA (O02662) Beta-3 adrenergic receptor (Beta-3 adrenoceptor) (Beta-3| adrenoreceptor) Length = 405 Score = 29.3 bits (64), Expect = 5.7 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = -2 Query: 339 AAGSAKATSPS--CSSPLKITRSPLKPSNLLQFRDHR 235 AA +++ P+ C+SP + L+P+ LL R+HR Sbjct: 253 AASRSRSPGPARRCASPAAVPSDRLRPARLLPLREHR 289
>TKT1_CANAL (O94039) Transketolase 1 (EC 2.2.1.1) (TK 1)| Length = 677 Score = 28.9 bits (63), Expect = 7.5 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = +3 Query: 366 LSSFSMHPILWIISRNKVGLSPTG 437 LS+ S HP++W+ + + +GL G Sbjct: 452 LSALSHHPVIWVATHDSIGLGEDG 475
>ALP16_SCHPO (P87244) Spindle pole body component alp16 (Altered polarity| protein 16) Length = 759 Score = 28.9 bits (63), Expect = 7.5 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = -1 Query: 307 LFKSIEDYEKSLEAKQSAAVQGS*DRSWSLYHGLME 200 LF++ D+E S+E K + V + SWS Y G E Sbjct: 651 LFQAQSDFESSVELKDRSIVTKTTIMSWSKYQGTKE 686
>TKT1_KLULA (Q12630) Transketolase (EC 2.2.1.1) (TK)| Length = 679 Score = 28.5 bits (62), Expect = 9.7 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = +3 Query: 366 LSSFSMHPILWIISRNKVGLSPTG 437 LS+ S HP++W+ + + +GL G Sbjct: 454 LSALSGHPVIWVATHDSIGLGEDG 477 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,742,441 Number of Sequences: 219361 Number of extensions: 1316986 Number of successful extensions: 3271 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 3214 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3270 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
