ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart11d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MEGF8_MOUSE (P60882) Multiple epidermal growth factor-like domai... 29 5.6
2MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domai... 28 9.6
3MEMB_METTR (P27354) Methane monooxygenase component A beta chain... 28 9.6

>MEGF8_MOUSE (P60882) Multiple epidermal growth factor-like domains 8 (EGF-like|
           domain-containing protein 4) (Multiple EGF-like domain
           protein 4)
          Length = 2330

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 296 WCQGRCRSTASLGAATGRRP*ASC 225
           WCQG C++    G  +G  P ASC
Sbjct: 120 WCQGACQAAPPPGTPSGACPAASC 143



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>MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domains 8 (EGF-like|
           domain-containing protein 4) (Multiple EGF-like domain
           protein 4)
          Length = 2386

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 296 WCQGRCRSTASLGAATGRRP*ASC 225
           WCQG C++    G   G  P ASC
Sbjct: 120 WCQGACQAAPPPGTPLGACPAASC 143



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>MEMB_METTR (P27354) Methane monooxygenase component A beta chain (EC|
           1.14.13.25) (Methane hydroxylase)
          Length = 393

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 235 HGRRPVAAPKEAVDLHRPWHQHRHPASSGHHP 330
           HG RP    +        W++HR PA   HHP
Sbjct: 79  HGGRPSWGNESTELRTTDWYRHRDPARRWHHP 110


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,037,585
Number of Sequences: 219361
Number of extensions: 665867
Number of successful extensions: 1603
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1597
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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