ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart11d02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478847.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.11
2emb|CR385271.1| Gallus gallus finished cDNA, clone ChEST550c6 46 0.11
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
4dbj|AP004182.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
5dbj|AP003804.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
6dbj|AK107610.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.11
7gb|AC009735.23| Drosophila melanogaster clone BACR15O02, complet... 44 0.42
8gb|AC008355.5| Drosophila melanogaster clone BACR30G03, complete... 44 0.42
9emb|X63729.1|DMAPROB D.melanogaster alternative proboscipedia mRNA 44 0.42
10emb|X63728.1|DMPROB D.melanogaster proboscipedia mRNA 44 0.42
11ref|NM_206441.1| Drosophila melanogaster proboscipedia CG31481-R... 44 0.42
12ref|NM_206440.1| Drosophila melanogaster proboscipedia CG31481-R... 44 0.42
13ref|NM_206439.1| Drosophila melanogaster proboscipedia CG31481-R... 44 0.42
14ref|NM_176396.1| Drosophila melanogaster CG9795-RC, transcript v... 44 0.42
15ref|NM_164338.2| Drosophila melanogaster CG9795-RB, transcript v... 44 0.42
16ref|NM_141197.3| Drosophila melanogaster CG9795-RA, transcript v... 44 0.42
17ref|NM_057321.4| Drosophila melanogaster proboscipedia CG31481-R... 44 0.42
18ref|NM_001014604.1| Drosophila melanogaster CG9795-RD, transcrip... 44 0.42
19gb|AY061348.1| Drosophila melanogaster LD27917 full length cDNA 44 0.42
20gb|AC095014.1| Drosophila melanogaster, chromosome 3R, region 83... 44 0.42
21gb|S94719.1|S94705S5 Drosophila melanogaster proboscipedia (pb) ... 44 0.42
22gb|AE001572.2| Drosophila melanogaster Antennapedia complex (ANT... 44 0.42
23gb|AE003674.3| Drosophila melanogaster chromosome 3R, section 10... 44 0.42
24gb|AE003606.4| Drosophila melanogaster chromosome 3R, section 2 ... 44 0.42
25gb|BT001699.1| Drosophila melanogaster RE60140 full insert cDNA 44 0.42
26gb|AC001652.1|AC001652 Drosophila melanogaster DNA sequence (P1 ... 44 0.42
27emb|AL132948.2|CEY39B6A Caenorhabditis elegans YAC Y39B6A, compl... 42 1.6
28emb|CR406534.1| Gallus gallus finished cDNA, clone ChEST1016o22 42 1.6
29ref|NM_171589.1| Caenorhabditis elegans Y39B6A.18 (Y39B6A.18) mR... 42 1.6
30ref|XM_234584.3| PREDICTED: Rattus norvegicus similar to RIKEN c... 42 1.6
31emb|BX927385.15| Zebrafish DNA sequence from clone DKEY-76P7 in ... 42 1.6
32ref|XM_601468.2| PREDICTED: Bos taurus similar to CLIP-associati... 40 6.5
33ref|XM_607410.2| PREDICTED: Bos taurus similar to retinoic acid ... 40 6.5
34gb|BC016462.1| Mus musculus nuclear receptor subfamily 3, group ... 40 6.5
35ref|XM_903197.2| PREDICTED: Mus musculus RAR-related orphan rece... 40 6.5
36ref|XM_546660.2| PREDICTED: Canis familiaris similar to retinoic... 40 6.5
37gb|BC003757.1| Mus musculus RAR-related orphan receptor alpha, m... 40 6.5
38gb|AC138270.12| Mus musculus chromosome 7, clone RP23-323F17, co... 40 6.5
39gb|AC166575.1| Mus musculus BAC clone RP23-99E16 from chromosome... 40 6.5
40ref|XM_788246.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.5
41emb|Z82994.1|MMZ82994 M.musculus mRNA for nuclear orphan recepto... 40 6.5
42emb|Y08640.1|MMTFAC M.musculus mRNA for nuclear orphan receptor ... 40 6.5
43gb|AC166172.1| Mus musculus BAC clone RP23-106N22 from chromosom... 40 6.5
44gb|AC107241.4| Homo sapiens chromosome 15, clone CTD-2501E16, co... 40 6.5
45gb|AC108137.8| Homo sapiens chromosome 15, clone RP11-941F15, co... 40 6.5
46dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo... 40 6.5
47emb|CR611772.1| full-length cDNA clone CS0DD009YF09 of Neuroblas... 40 6.5
48gb|AC022430.6| Homo sapiens chromosome 5 clone CTD-2581L3, compl... 40 6.5
49gb|AC008808.7| Homo sapiens chromosome 5 clone CTD-2089N3, compl... 40 6.5
50dbj|AK155827.1| Mus musculus B6-derived CD11 +ve dendritic cells... 40 6.5
51gb|AC009560.10| Homo sapiens chromosome 15, clone RP11-219B17, c... 40 6.5
52gb|AE008686.1|AE008686 Mus musculus T-cell receptor alpha/delta ... 40 6.5
53gb|S82720.1| mROR alpha =orphan nuclear receptor [mice, brain, m... 40 6.5
54gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 6.5
55ref|XM_217192.3| PREDICTED: Rattus norvegicus RAR-related orphan... 40 6.5
56gb|AC013486.12| Homo sapiens chromosome 15, clone RP11-2M12, com... 40 6.5
57dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome 40 6.5
58dbj|BS000227.1| Pan troglodytes chromosome 22 clone:PTB-059D22, ... 40 6.5
59dbj|AB127583.1| Mus musculus RORa4 gene for nuclear receptor ROR... 40 6.5
60gb|AC005835.1|AC005835 Mus musculus clone UWGC:mbac82 from 14D1-... 40 6.5
61dbj|AP001746.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 6.5
62gb|AC004399.1|AC004399 Mus musculus ma03m061, complete sequence 40 6.5
63emb|CT030683.6| Mouse DNA sequence from clone RP23-22O8 on chrom... 40 6.5
64gb|AC002109.1|AC002109 Genomic sequence from Mouse 9, complete s... 40 6.5
65gb|DQ286748.1| Strongylocentrotus purpuratus forkhead transcript... 40 6.5
66emb|AL662823.12| Mouse DNA sequence from clone RP23-243E17 on ch... 40 6.5
67emb|AL669938.9| Mouse DNA sequence from clone RP23-264N2 on chro... 40 6.5
68dbj|D45910.1| Mus caroli mRNA for mROR4, complete cds 40 6.5
69dbj|AP001622.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 6.5
70dbj|AP001621.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 6.5 
>ref|XM_478847.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2445

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 234  tcatggccggcgtccagtcgccg 256
            |||||||||||||||||||||||
Sbjct: 1735 tcatggccggcgtccagtcgccg 1713
to top
>emb|CR385271.1| Gallus gallus finished cDNA, clone ChEST550c6
          Length = 729

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 380 ggctgcggcagctgctgctgttg 402
           |||||||||||||||||||||||
Sbjct: 662 ggctgcggcagctgctgctgttg 640
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 234      tcatggccggcgtccagtcgccg 256
                |||||||||||||||||||||||
Sbjct: 23346364 tcatggccggcgtccagtcgccg 23346342
to top
>dbj|AP004182.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1199_H01
          Length = 107252

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 234   tcatggccggcgtccagtcgccg 256
             |||||||||||||||||||||||
Sbjct: 27588 tcatggccggcgtccagtcgccg 27566
to top
>dbj|AP003804.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1065_B06
          Length = 113170

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 234    tcatggccggcgtccagtcgccg 256
              |||||||||||||||||||||||
Sbjct: 101622 tcatggccggcgtccagtcgccg 101600
to top
>dbj|AK107610.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-131-C05, full
            insert sequence
          Length = 2445

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 234  tcatggccggcgtccagtcgccg 256
            |||||||||||||||||||||||
Sbjct: 1735 tcatggccggcgtccagtcgccg 1713
to top
>gb|AC009735.23| Drosophila melanogaster clone BACR15O02, complete sequence
          Length = 159479

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 381    gctgcggcagctgctgctgttg 402
              ||||||||||||||||||||||
Sbjct: 149243 gctgcggcagctgctgctgttg 149222
to top
>gb|AC008355.5| Drosophila melanogaster clone BACR30G03, complete sequence
          Length = 151500

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 381   gctgcggcagctgctgctgttg 402
             ||||||||||||||||||||||
Sbjct: 61657 gctgcggcagctgctgctgttg 61636
to top
>emb|X63729.1|DMAPROB D.melanogaster alternative proboscipedia mRNA
          Length = 2418

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 381  gctgcggcagctgctgctgttg 402
            ||||||||||||||||||||||
Sbjct: 1471 gctgcggcagctgctgctgttg 1450
to top
>emb|X63728.1|DMPROB D.melanogaster proboscipedia mRNA
          Length = 3735

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 381  gctgcggcagctgctgctgttg 402
            ||||||||||||||||||||||
Sbjct: 2442 gctgcggcagctgctgctgttg 2421
to top
>ref|NM_206441.1| Drosophila melanogaster proboscipedia CG31481-RB, transcript variant
            B (pb), mRNA
          Length = 3717

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 381  gctgcggcagctgctgctgttg 402
            ||||||||||||||||||||||
Sbjct: 2427 gctgcggcagctgctgctgttg 2406
to top
>ref|NM_206440.1| Drosophila melanogaster proboscipedia CG31481-RC, transcript variant
            C (pb), mRNA
          Length = 3717

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 381  gctgcggcagctgctgctgttg 402
            ||||||||||||||||||||||
Sbjct: 2427 gctgcggcagctgctgctgttg 2406
to top
>ref|NM_206439.1| Drosophila melanogaster proboscipedia CG31481-RD, transcript variant
            D (pb), mRNA
          Length = 3702

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 381  gctgcggcagctgctgctgttg 402
            ||||||||||||||||||||||
Sbjct: 2412 gctgcggcagctgctgctgttg 2391
to top
>ref|NM_176396.1| Drosophila melanogaster CG9795-RC, transcript variant C (CG9795),
           mRNA
          Length = 2540

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 381 gctgcggcagctgctgctgttg 402
           ||||||||||||||||||||||
Sbjct: 695 gctgcggcagctgctgctgttg 674
to top
>ref|NM_164338.2| Drosophila melanogaster CG9795-RB, transcript variant B (CG9795),
           mRNA
          Length = 2506

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 381 gctgcggcagctgctgctgttg 402
           ||||||||||||||||||||||
Sbjct: 661 gctgcggcagctgctgctgttg 640
to top
>ref|NM_141197.3| Drosophila melanogaster CG9795-RA, transcript variant A (CG9795),
           mRNA
          Length = 2688

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 381 gctgcggcagctgctgctgttg 402
           ||||||||||||||||||||||
Sbjct: 843 gctgcggcagctgctgctgttg 822
to top
>ref|NM_057321.4| Drosophila melanogaster proboscipedia CG31481-RA, transcript variant
            A (pb), mRNA
          Length = 3732

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 381  gctgcggcagctgctgctgttg 402
            ||||||||||||||||||||||
Sbjct: 2442 gctgcggcagctgctgctgttg 2421
to top
>ref|NM_001014604.1| Drosophila melanogaster CG9795-RD, transcript variant D (CG9795),
           mRNA
          Length = 2813

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 381 gctgcggcagctgctgctgttg 402
           ||||||||||||||||||||||
Sbjct: 661 gctgcggcagctgctgctgttg 640
to top
>gb|AY061348.1| Drosophila melanogaster LD27917 full length cDNA
          Length = 2620

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 381 gctgcggcagctgctgctgttg 402
           ||||||||||||||||||||||
Sbjct: 758 gctgcggcagctgctgctgttg 737
to top
>gb|AC095014.1| Drosophila melanogaster, chromosome 3R, region 83F-84A, BAC clone
             BACR19D23, complete sequence
          Length = 170801

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 381   gctgcggcagctgctgctgttg 402
             ||||||||||||||||||||||
Sbjct: 43991 gctgcggcagctgctgctgttg 44012
to top
>gb|S94719.1|S94705S5 Drosophila melanogaster proboscipedia (pb) gene, sequence
          Length = 1370

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 381 gctgcggcagctgctgctgttg 402
           ||||||||||||||||||||||
Sbjct: 929 gctgcggcagctgctgctgttg 908
to top
>gb|AE001572.2| Drosophila melanogaster Antennapedia complex (ANT-C),complete sequence
          Length = 429825

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 381    gctgcggcagctgctgctgttg 402
              ||||||||||||||||||||||
Sbjct: 346779 gctgcggcagctgctgctgttg 346758
to top
>gb|AE003674.3| Drosophila melanogaster chromosome 3R, section 10 of 118 of the complete
              sequence
          Length = 298020

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 381    gctgcggcagctgctgctgttg 402
              ||||||||||||||||||||||
Sbjct: 229828 gctgcggcagctgctgctgttg 229849
to top
>gb|AE003606.4| Drosophila melanogaster chromosome 3R, section 2 of 118 of the complete
             sequence
          Length = 299749

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 381   gctgcggcagctgctgctgttg 402
             ||||||||||||||||||||||
Sbjct: 54561 gctgcggcagctgctgctgttg 54540
to top
>gb|BT001699.1| Drosophila melanogaster RE60140 full insert cDNA
          Length = 2828

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 381 gctgcggcagctgctgctgttg 402
           ||||||||||||||||||||||
Sbjct: 661 gctgcggcagctgctgctgttg 640
to top
>gb|AC001652.1|AC001652 Drosophila melanogaster DNA sequence (P1 DS00004 (D12)), complete
             sequence
          Length = 85757

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 381   gctgcggcagctgctgctgttg 402
             ||||||||||||||||||||||
Sbjct: 83047 gctgcggcagctgctgctgttg 83068
to top
>emb|AL132948.2|CEY39B6A Caenorhabditis elegans YAC Y39B6A, complete sequence
          Length = 246237

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 387    gcagctgctgctgttggatcg 407
              |||||||||||||||||||||
Sbjct: 112748 gcagctgctgctgttggatcg 112728
to top
>emb|CR406534.1| Gallus gallus finished cDNA, clone ChEST1016o22
          Length = 819

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 180 tctgaatctcagtctcatgcc 200
           |||||||||||||||||||||
Sbjct: 208 tctgaatctcagtctcatgcc 188
to top
>ref|NM_171589.1| Caenorhabditis elegans Y39B6A.18 (Y39B6A.18) mRNA, complete cds
          Length = 4059

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 387  gcagctgctgctgttggatcg 407
            |||||||||||||||||||||
Sbjct: 2428 gcagctgctgctgttggatcg 2448
to top
>ref|XM_234584.3| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4831426I19
            (predicted) (LOC299356), mRNA
          Length = 3471

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 405  tcggcagcagaagcggtggcg 425
            |||||||||||||||||||||
Sbjct: 2704 tcggcagcagaagcggtggcg 2724
to top
>emb|BX927385.15| Zebrafish DNA sequence from clone DKEY-76P7 in linkage group 10,
             complete sequence
          Length = 243665

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 93    cactagactaggactagagta 113
             |||||||||||||||||||||
Sbjct: 43549 cactagactaggactagagta 43569
to top
>ref|XM_601468.2| PREDICTED: Bos taurus similar to CLIP-associating protein 2
           (LOC523173), mRNA
          Length = 913

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 agctcagactctgatactga 138
           ||||||||||||||||||||
Sbjct: 514 agctcagactctgatactga 533
to top
>ref|XM_607410.2| PREDICTED: Bos taurus similar to retinoic acid induced 1
           (LOC528972), mRNA
          Length = 5817

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 380 ggctgcggcagctgctgctg 399
           ||||||||||||||||||||
Sbjct: 509 ggctgcggcagctgctgctg 490
to top
>gb|BC016462.1| Mus musculus nuclear receptor subfamily 3, group C, member 1, mRNA
           (cDNA clone IMAGE:4036433), containing frame-shift
           errors
          Length = 1638

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 380 ggctgcggcagctgctgctg 399
           ||||||||||||||||||||
Sbjct: 377 ggctgcggcagctgctgctg 358
to top
>ref|XM_903197.2| PREDICTED: Mus musculus RAR-related orphan receptor alpha,
           transcript variant 4 (Rora), mRNA
          Length = 11020

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 381 gctgcggcagctgctgctgt 400
           ||||||||||||||||||||
Sbjct: 239 gctgcggcagctgctgctgt 258
to top
>ref|XM_546660.2| PREDICTED: Canis familiaris similar to retinoic acid induced 1
           (LOC489541), mRNA
          Length = 5854

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 380 ggctgcggcagctgctgctg 399
           ||||||||||||||||||||
Sbjct: 512 ggctgcggcagctgctgctg 493
to top
>gb|BC003757.1| Mus musculus RAR-related orphan receptor alpha, mRNA (cDNA clone
           MGC:5892 IMAGE:3592667), complete cds
          Length = 2381

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 381 gctgcggcagctgctgctgt 400
           ||||||||||||||||||||
Sbjct: 29  gctgcggcagctgctgctgt 48
to top
>gb|AC138270.12| Mus musculus chromosome 7, clone RP23-323F17, complete sequence
          Length = 213855

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    accaattacatcaagagtag 56
             ||||||||||||||||||||
Sbjct: 68336 accaattacatcaagagtag 68317
to top
>gb|AC166575.1| Mus musculus BAC clone RP23-99E16 from chromosome 17, complete sequence
          Length = 200353

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    gcacccaaagaagctgttga 275
              ||||||||||||||||||||
Sbjct: 179574 gcacccaaagaagctgttga 179593
to top
>ref|XM_788246.1| PREDICTED: Strongylocentrotus purpuratus similar to forkhead box K1
           (LOC588569), mRNA
          Length = 2117

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 380 ggctgcggcagctgctgctg 399
           ||||||||||||||||||||
Sbjct: 660 ggctgcggcagctgctgctg 679
to top
>emb|Z82994.1|MMZ82994 M.musculus mRNA for nuclear orphan receptor/transcription factor
          Length = 1619

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 381 gctgcggcagctgctgctgt 400
           ||||||||||||||||||||
Sbjct: 68  gctgcggcagctgctgctgt 87
to top
>emb|Y08640.1|MMTFAC M.musculus mRNA for nuclear orphan receptor ROR-alpha 4
          Length = 1805

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 381 gctgcggcagctgctgctgt 400
           ||||||||||||||||||||
Sbjct: 238 gctgcggcagctgctgctgt 257
to top
>gb|AC166172.1| Mus musculus BAC clone RP23-106N22 from chromosome 17, complete sequence
          Length = 213656

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    gcacccaaagaagctgttga 275
              ||||||||||||||||||||
Sbjct: 119421 gcacccaaagaagctgttga 119440
to top
>gb|AC107241.4| Homo sapiens chromosome 15, clone CTD-2501E16, complete sequence
          Length = 105583

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 381 gctgcggcagctgctgctgt 400
           ||||||||||||||||||||
Sbjct: 130 gctgcggcagctgctgctgt 149
to top
>gb|AC108137.8| Homo sapiens chromosome 15, clone RP11-941F15, complete sequence
          Length = 177015

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   attctgaatctcagtctcat 197
             ||||||||||||||||||||
Sbjct: 76887 attctgaatctcagtctcat 76868
to top
>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence
          Length = 1877212

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 410     agcagaagcggtggcgccga 429
               ||||||||||||||||||||
Sbjct: 1821775 agcagaagcggtggcgccga 1821794
to top
>emb|CR611772.1| full-length cDNA clone CS0DD009YF09 of Neuroblastoma Cot
           50-normalized of Homo sapiens (human)
          Length = 1701

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 381 gctgcggcagctgctgctgt 400
           ||||||||||||||||||||
Sbjct: 17  gctgcggcagctgctgctgt 36
to top
>gb|AC022430.6| Homo sapiens chromosome 5 clone CTD-2581L3, complete sequence
          Length = 71206

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   ctgcactggattctgaatct 188
             ||||||||||||||||||||
Sbjct: 50394 ctgcactggattctgaatct 50375
to top
>gb|AC008808.7| Homo sapiens chromosome 5 clone CTD-2089N3, complete sequence
          Length = 45775

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 169  ctgcactggattctgaatct 188
            ||||||||||||||||||||
Sbjct: 4902 ctgcactggattctgaatct 4883
to top
>dbj|AK155827.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F730227N03
           product:RAR-related orphan receptor alpha, full insert
           sequence
          Length = 2278

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 381 gctgcggcagctgctgctgt 400
           ||||||||||||||||||||
Sbjct: 31  gctgcggcagctgctgctgt 50
to top
>gb|AC009560.10| Homo sapiens chromosome 15, clone RP11-219B17, complete sequence
          Length = 177308

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 381   gctgcggcagctgctgctgt 400
             ||||||||||||||||||||
Sbjct: 27332 gctgcggcagctgctgctgt 27313
to top
>gb|AE008686.1|AE008686 Mus musculus T-cell receptor alpha/delta locus  section 4 of 4 of the
              complete region
          Length = 461875

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 169    ctgcactggattctgaatct 188
              ||||||||||||||||||||
Sbjct: 165998 ctgcactggattctgaatct 165979
to top
>gb|S82720.1| mROR alpha =orphan nuclear receptor [mice, brain, mRNA, 2085 nt]
          Length = 2085

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 381 gctgcggcagctgctgctgt 400
           ||||||||||||||||||||
Sbjct: 6   gctgcggcagctgctgctgt 25
to top
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 416     agcggtggcgccgatgagcc 435
               ||||||||||||||||||||
Sbjct: 1484000 agcggtggcgccgatgagcc 1484019
to top
>ref|XM_217192.3| PREDICTED: Rattus norvegicus RAR-related orphan receptor alpha
           (predicted) (Rora_predicted), mRNA
          Length = 2574

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 381 gctgcggcagctgctgctgt 400
           ||||||||||||||||||||
Sbjct: 239 gctgcggcagctgctgctgt 258
to top
>gb|AC013486.12| Homo sapiens chromosome 15, clone RP11-2M12, complete sequence
          Length = 162060

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    attctgaatctcagtctcat 197
              ||||||||||||||||||||
Sbjct: 144288 attctgaatctcagtctcat 144307
to top
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome
          Length = 1669695

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 339    acaagcacgtcgcagaggag 358
              ||||||||||||||||||||
Sbjct: 252374 acaagcacgtcgcagaggag 252355
to top
>dbj|BS000227.1| Pan troglodytes chromosome 22 clone:PTB-059D22, map 22, complete
             sequences
          Length = 148847

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   cctcctctggtcaccacccc 330
             ||||||||||||||||||||
Sbjct: 78552 cctcctctggtcaccacccc 78533
to top
>dbj|AB127583.1| Mus musculus RORa4 gene for nuclear receptor RORalpha4, exon 1,
            partial cds
          Length = 2262

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 381  gctgcggcagctgctgctgt 400
            ||||||||||||||||||||
Sbjct: 1044 gctgcggcagctgctgctgt 1063
to top
>gb|AC005835.1|AC005835 Mus musculus clone UWGC:mbac82 from 14D1-D2 (T-Cell Receptor Alpha
            Locus), complete sequence
          Length = 132297

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 169  ctgcactggattctgaatct 188
            ||||||||||||||||||||
Sbjct: 2973 ctgcactggattctgaatct 2954
to top
>dbj|AP001746.1| Homo sapiens genomic DNA, chromosome 21q, section 90/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   cctcctctggtcaccacccc 330
             ||||||||||||||||||||
Sbjct: 27039 cctcctctggtcaccacccc 27020
to top
>gb|AC004399.1|AC004399 Mus musculus ma03m061, complete sequence
          Length = 38588

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   ctgcactggattctgaatct 188
             ||||||||||||||||||||
Sbjct: 35986 ctgcactggattctgaatct 35967
to top
>emb|CT030683.6| Mouse DNA sequence from clone RP23-22O8 on chromosome 9, complete
             sequence
          Length = 126280

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 381   gctgcggcagctgctgctgt 400
             ||||||||||||||||||||
Sbjct: 82755 gctgcggcagctgctgctgt 82774
to top
>gb|AC002109.1|AC002109 Genomic sequence from Mouse 9, complete sequence
          Length = 160048

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 381   gctgcggcagctgctgctgt 400
             ||||||||||||||||||||
Sbjct: 71758 gctgcggcagctgctgctgt 71739
to top
>gb|DQ286748.1| Strongylocentrotus purpuratus forkhead transcription factor K
           (FoxK) mRNA, partial cds
          Length = 1820

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 380 ggctgcggcagctgctgctg 399
           ||||||||||||||||||||
Sbjct: 691 ggctgcggcagctgctgctg 710
to top
>emb|AL662823.12| Mouse DNA sequence from clone RP23-243E17 on chromosome 3, complete
             sequence
          Length = 215241

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 378   gaggctgcggcagctgctgctgtt 401
             ||||||| ||||||||||||||||
Sbjct: 29254 gaggctgtggcagctgctgctgtt 29231
to top
>emb|AL669938.9| Mouse DNA sequence from clone RP23-264N2 on chromosome 4, complete
              sequence
          Length = 199071

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 380    ggctgcggcagctgctgctg 399
              ||||||||||||||||||||
Sbjct: 124085 ggctgcggcagctgctgctg 124104
to top
>dbj|D45910.1| Mus caroli mRNA for mROR4, complete cds
          Length = 2123

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 381 gctgcggcagctgctgctgt 400
           ||||||||||||||||||||
Sbjct: 6   gctgcggcagctgctgctgt 25
to top
>dbj|AP001622.1| Homo sapiens genomic DNA, chromosome 21, clone:KB1430A10, MX1-D21S171
             region, complete sequence
          Length = 149850

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   cctcctctggtcaccacccc 330
             ||||||||||||||||||||
Sbjct: 52308 cctcctctggtcaccacccc 52289
to top
>dbj|AP001621.1| Homo sapiens genomic DNA, chromosome 21, clone:KB1342D7, MX1-D21S171
              region, complete sequence
          Length = 144087

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 311    cctcctctggtcaccacccc 330
              ||||||||||||||||||||
Sbjct: 126870 cctcctctggtcaccacccc 126851


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,140,970
Number of Sequences: 3902068
Number of extensions: 4140970
Number of successful extensions: 87877
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87670
Number of HSP's gapped (non-prelim): 207
length of query: 480
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 458
effective length of database: 17,147,199,772
effective search space: 7853417495576
effective search space used: 7853417495576
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top