ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart11d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF2A_YEAST (P20459) Eukaryotic translation initiation factor 2 a... 34 0.32
21433Z_XENTR (Q6P4Z5) 14-3-3 protein zeta 31 2.7
31433Z_XENLA (Q91896) 14-3-3 protein zeta 31 2.7
4MCM_SULSO (Q9UXG1) Minichromosome maintenance protein MCM (EC 3.... 30 4.6
5143B1_ONCMY (Q6UFZ9) 14-3-3 protein beta/alpha-1 (Protein 14-3-3B1) 30 4.6

>IF2A_YEAST (P20459) Eukaryotic translation initiation factor 2 alpha subunit|
           (eIF-2-alpha)
          Length = 304

 Score = 33.9 bits (76), Expect = 0.32
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -1

Query: 405 LSTSRLLASTGCASGPIYIPNSTKVDKQNVSELLE-ALQQQTEAVAKLGNVLKRDTRDVE 229
           +ST ++       + P+Y+  +  +DKQ   E LE A+++ TE + K G V         
Sbjct: 211 MSTEQMQVKVKLVAAPLYVLTTQALDKQKGIEQLESAIEKITEVITKYGGVCNITMPPKA 270

Query: 228 IVLSEDTDM 202
           +  +ED ++
Sbjct: 271 VTATEDAEL 279



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>1433Z_XENTR (Q6P4Z5) 14-3-3 protein zeta|
          Length = 245

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -1

Query: 501 MKEEADLYERLVAIIKQIKGTGGDLSKRAYNLLSTS 394
           + E+A+ Y+ + A +K++   GG+LS    NLLS +
Sbjct: 12  LAEQAERYDDMAACMKRVTEEGGELSNEERNLLSVA 47



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>1433Z_XENLA (Q91896) 14-3-3 protein zeta|
          Length = 245

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -1

Query: 501 MKEEADLYERLVAIIKQIKGTGGDLSKRAYNLLSTS 394
           + E+A+ Y+ + A +K++   GG+LS    NLLS +
Sbjct: 12  LAEQAERYDDMAACMKRVTEEGGELSNEERNLLSVA 47



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>MCM_SULSO (Q9UXG1) Minichromosome maintenance protein MCM (EC 3.-.-.-)|
          Length = 686

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 25/78 (32%), Positives = 39/78 (50%)
 Frame = -1

Query: 471 LVAIIKQIKGTGGDLSKRAYNLLSTSRLLASTGCASGPIYIPNSTKVDKQNVSELLEALQ 292
           L A + + KGTG       Y L + + +LA  G A     I    K+  ++   + EA++
Sbjct: 373 LTAAVVREKGTG------EYYLEAGALVLADGGIA----VIDEIDKMRDEDRVAIHEAME 422

Query: 291 QQTEAVAKLGNVLKRDTR 238
           QQT ++AK G V K + R
Sbjct: 423 QQTVSIAKAGIVAKLNAR 440



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>143B1_ONCMY (Q6UFZ9) 14-3-3 protein beta/alpha-1 (Protein 14-3-3B1)|
          Length = 244

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 501 MKEEADLYERLVAIIKQIKGTGGDLSKRAYNLLSTS 394
           + E+A+ Y+ + A +K +   GG+LS    NLLS +
Sbjct: 12  LAEQAERYDDMAAAMKAVTEQGGELSNEERNLLSVA 47


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,380,111
Number of Sequences: 219361
Number of extensions: 1545819
Number of successful extensions: 4063
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4062
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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