ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart11d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_506270.1| PREDICTED Oryza sativa (japonica cultivar-group... 159 1e-35
2ref|XM_477569.1| Oryza sativa (japonica cultivar-group), mRNA 159 1e-35
3dbj|AK060569.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 1e-35
4dbj|AK073103.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 7e-31
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 94 6e-16
6dbj|AP005830.4| Oryza sativa (japonica cultivar-group) genomic D... 94 6e-16
7dbj|AP006479.3| Oryza sativa (japonica cultivar-group) genomic D... 94 6e-16
8gb|AY106000.1| Zea mays PCO136000 mRNA sequence 60 8e-06
9gb|AC122242.2| Mus musculus BAC clone RP23-147P2 from chromosome... 44 0.48
10gb|AC138792.2| Mus musculus BAC clone RP23-235I2 from chromosome... 42 1.9
11ref|XM_990462.1| PREDICTED: Mus musculus cDNA sequence BC042720 ... 42 1.9
12ref|XM_983133.1| PREDICTED: Mus musculus cDNA sequence BC042720 ... 42 1.9
13ref|XM_893763.2| PREDICTED: Mus musculus cDNA sequence BC042720 ... 42 1.9
14gb|AC141566.4| Mus musculus BAC clone RP23-89G14 from chromosome... 42 1.9
15gb|AC117238.3| Mus musculus BAC clone RP24-82N17 from 1, complet... 42 1.9
16dbj|AK138673.1| Mus musculus adult male spinal cord cDNA, RIKEN ... 42 1.9
17dbj|AK037154.1| Mus musculus 6 days neonate skin cDNA, RIKEN ful... 42 1.9
18gb|AC079922.5| Homo sapiens BAC clone RP11-368A17 from 2, comple... 42 1.9
19emb|AL110477.2|CEY113G7B Caenorhabditis elegans YAC Y113G7B, com... 42 1.9
20gb|AC118589.10| Mus musculus chromosome 1, clone RP23-198G19, co... 42 1.9
21tpe|BN000002.1|HSA000002 TPA: TPA_exp: Homo sapiens complete int... 42 1.9
22gb|AC129321.5| Mus musculus BAC clone RP24-160I20 from 8, comple... 42 1.9
23emb|AL132641.3|CNS01DT6 Human chromosome 14 DNA sequence BAC C-3... 42 1.9
24gb|AC136525.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5
25gb|AC130724.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5
26gb|AC017005.7| Homo sapiens BAC clone RP11-100J21 from Y, comple... 40 7.5
27emb|CR730460.2|CNS0GQKH Tetraodon nigroviridis full-length cDNA 40 7.5
28gb|AC145476.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5
29dbj|BS000545.1| Pan troglodytes chromosome Y clone:PTB-221L15, c... 40 7.5
30gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 7.5
31gb|AC069130.6|AC069130 Homo sapiens BAC clone RP11-468D10 from Y... 40 7.5
32dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
33gb|AC084213.19|AC084213 Mus musculus 1 BAC RP23-470F8 (Roswell P... 40 7.5
34gb|AC073649.3|AC073649 Homo sapiens clone RP11-823D8, complete s... 40 7.5
35gb|AC015978.4|AC015978 Homo sapiens BAC clone RP11-529I21 from Y... 40 7.5
36ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P... 40 7.5
37ref|NG_004636.1| Homo sapiens chromosome Y palindromes P4 and P5... 40 7.5
38gb|AC138111.3| Mus musculus BAC clone RP24-262B6 from 1, complet... 40 7.5
39emb|AL731857.9| Mouse DNA sequence from clone RP23-106A3 on chro... 40 7.5 
>ref|XM_506270.1| PREDICTED Oryza sativa (japonica cultivar-group), B1120F06.107 mRNA
          Length = 1733

 Score =  159 bits (80), Expect = 1e-35
 Identities = 314/392 (80%)
 Strand = Plus / Minus

                                                                        
Query: 164  tacatcttaaatgcccttctcctggaactgtcttcggccatatccgtgtcttccgaaagt 223
            |||||||| |||||||||||||    ||||||||| ||||| ||||||||||||||||||
Sbjct: 1261 tacatcttcaatgcccttctcccaacactgtcttctgccatgtccgtgtcttccgaaagt 1202

                                                                        
Query: 224  acaatttccacgtccctggtatccctttttaatacattgcctaacttcgcaactgcttcg 283
            |  ||||||| ||| || ||||| ||||| |  |||||||| ||||| ||||| ||||| 
Sbjct: 1201 attatttccaagtctcttgtatctcttttcatcacattgcccaacttggcaacagcttcc 1142

                                                                        
Query: 284  gtctgctgttgcaatgcctcaagaagctcagaaacattctgcttatcgactttggttgaa 343
            ||||| ||||| || |||||||||||||||| |||| |||| |  || ||||| | ||| 
Sbjct: 1141 gtctgttgttgtaaggcctcaagaagctcagcaacactctgttcgtcaactttcgctgag 1082

                                                                        
Query: 344  ttcggaatatagatgggaccactagcgcagccggtgcttgcaagaagacgtgaggttgaa 403
             | ||||||||||| ||||||  || ||  || |  || |||||||| || || ||||||
Sbjct: 1081 ctaggaatatagataggaccagcagtgccaccagcactagcaagaaggcgagaagttgaa 1022

                                                                        
Query: 404  agaagattataagctctcttcgatagatcaccgccggttccttttatctgctttattata 463
            |||||||||||| ||||| |    ||||||||   || |||||||| |||||||  ||||
Sbjct: 1021 agaagattataaactctcctgtgcagatcaccagtgggtccttttagctgctttgctata 962

                                                                        
Query: 464  gcaaccaatctttcatataaatcggcttcctctttcattaatggaacacgaaaaccccgg 523
             || ||| || |||||| | ||| |||||||| ||| ||| ||||| |||| ||||||| 
Sbjct: 961  acagccagtcgttcatacagatcagcttcctccttcgttagtggaatacgataaccccga 902

                                            
Query: 524  ttttccagcgcctccactattctcatgatcct 555
            || || |  ||||||||||||||||| |||||
Sbjct: 901  ttctctaatgcctccactattctcattatcct 870
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>ref|XM_477569.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1662

 Score =  159 bits (80), Expect = 1e-35
 Identities = 314/392 (80%)
 Strand = Plus / Minus

                                                                        
Query: 164  tacatcttaaatgcccttctcctggaactgtcttcggccatatccgtgtcttccgaaagt 223
            |||||||| |||||||||||||    ||||||||| ||||| ||||||||||||||||||
Sbjct: 1295 tacatcttcaatgcccttctcccaacactgtcttctgccatgtccgtgtcttccgaaagt 1236

                                                                        
Query: 224  acaatttccacgtccctggtatccctttttaatacattgcctaacttcgcaactgcttcg 283
            |  ||||||| ||| || ||||| ||||| |  |||||||| ||||| ||||| ||||| 
Sbjct: 1235 attatttccaagtctcttgtatctcttttcatcacattgcccaacttggcaacagcttcc 1176

                                                                        
Query: 284  gtctgctgttgcaatgcctcaagaagctcagaaacattctgcttatcgactttggttgaa 343
            ||||| ||||| || |||||||||||||||| |||| |||| |  || ||||| | ||| 
Sbjct: 1175 gtctgttgttgtaaggcctcaagaagctcagcaacactctgttcgtcaactttcgctgag 1116

                                                                        
Query: 344  ttcggaatatagatgggaccactagcgcagccggtgcttgcaagaagacgtgaggttgaa 403
             | ||||||||||| ||||||  || ||  || |  || |||||||| || || ||||||
Sbjct: 1115 ctaggaatatagataggaccagcagtgccaccagcactagcaagaaggcgagaagttgaa 1056

                                                                        
Query: 404  agaagattataagctctcttcgatagatcaccgccggttccttttatctgctttattata 463
            |||||||||||| ||||| |    ||||||||   || |||||||| |||||||  ||||
Sbjct: 1055 agaagattataaactctcctgtgcagatcaccagtgggtccttttagctgctttgctata 996

                                                                        
Query: 464  gcaaccaatctttcatataaatcggcttcctctttcattaatggaacacgaaaaccccgg 523
             || ||| || |||||| | ||| |||||||| ||| ||| ||||| |||| ||||||| 
Sbjct: 995  acagccagtcgttcatacagatcagcttcctccttcgttagtggaatacgataaccccga 936

                                            
Query: 524  ttttccagcgcctccactattctcatgatcct 555
            || || |  ||||||||||||||||| |||||
Sbjct: 935  ttctctaatgcctccactattctcattatcct 904
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>dbj|AK060569.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-C01, full
            insert sequence
          Length = 1733

 Score =  159 bits (80), Expect = 1e-35
 Identities = 314/392 (80%)
 Strand = Plus / Minus

                                                                        
Query: 164  tacatcttaaatgcccttctcctggaactgtcttcggccatatccgtgtcttccgaaagt 223
            |||||||| |||||||||||||    ||||||||| ||||| ||||||||||||||||||
Sbjct: 1261 tacatcttcaatgcccttctcccaacactgtcttctgccatgtccgtgtcttccgaaagt 1202

                                                                        
Query: 224  acaatttccacgtccctggtatccctttttaatacattgcctaacttcgcaactgcttcg 283
            |  ||||||| ||| || ||||| ||||| |  |||||||| ||||| ||||| ||||| 
Sbjct: 1201 attatttccaagtctcttgtatctcttttcatcacattgcccaacttggcaacagcttcc 1142

                                                                        
Query: 284  gtctgctgttgcaatgcctcaagaagctcagaaacattctgcttatcgactttggttgaa 343
            ||||| ||||| || |||||||||||||||| |||| |||| |  || ||||| | ||| 
Sbjct: 1141 gtctgttgttgtaaggcctcaagaagctcagcaacactctgttcgtcaactttcgctgag 1082

                                                                        
Query: 344  ttcggaatatagatgggaccactagcgcagccggtgcttgcaagaagacgtgaggttgaa 403
             | ||||||||||| ||||||  || ||  || |  || |||||||| || || ||||||
Sbjct: 1081 ctaggaatatagataggaccagcagtgccaccagcactagcaagaaggcgagaagttgaa 1022

                                                                        
Query: 404  agaagattataagctctcttcgatagatcaccgccggttccttttatctgctttattata 463
            |||||||||||| ||||| |    ||||||||   || |||||||| |||||||  ||||
Sbjct: 1021 agaagattataaactctcctgtgcagatcaccagtgggtccttttagctgctttgctata 962

                                                                        
Query: 464  gcaaccaatctttcatataaatcggcttcctctttcattaatggaacacgaaaaccccgg 523
             || ||| || |||||| | ||| |||||||| ||| ||| ||||| |||| ||||||| 
Sbjct: 961  acagccagtcgttcatacagatcagcttcctccttcgttagtggaatacgataaccccga 902

                                            
Query: 524  ttttccagcgcctccactattctcatgatcct 555
            || || |  ||||||||||||||||| |||||
Sbjct: 901  ttctctaatgcctccactattctcattatcct 870
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>dbj|AK073103.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024G02, full
            insert sequence
          Length = 1662

 Score =  143 bits (72), Expect = 7e-31
 Identities = 306/384 (79%)
 Strand = Plus / Minus

                                                                        
Query: 164  tacatcttaaatgcccttctcctggaactgtcttcggccatatccgtgtcttccgaaagt 223
            |||||||| |||||||||||||    ||||||||| ||||| ||||||||||||||||||
Sbjct: 1295 tacatcttcaatgcccttctcccaacactgtcttctgccatgtccgtgtcttccgaaagt 1236

                                                                        
Query: 224  acaatttccacgtccctggtatccctttttaatacattgcctaacttcgcaactgcttcg 283
            |  ||||||| ||| || ||||| ||||| |  |||||||| ||||| ||||| ||||| 
Sbjct: 1235 attatttccaagtctcttgtatctcttttcatcacattgcccaacttggcaacagcttcc 1176

                                                                        
Query: 284  gtctgctgttgcaatgcctcaagaagctcagaaacattctgcttatcgactttggttgaa 343
            ||||| ||||| || |||||||||||||||| |||| |||| |  || ||||| | ||| 
Sbjct: 1175 gtctgttgttgtaaggcctcaagaagctcagcaacactctgttcgtcaactttcgctgag 1116

                                                                        
Query: 344  ttcggaatatagatgggaccactagcgcagccggtgcttgcaagaagacgtgaggttgaa 403
             | ||||||||||| ||||||  || ||  || |  || |||||||| || || ||||||
Sbjct: 1115 ctaggaatatagataggaccagcagtgccaccagcactagcaagaaggcgagaagttgaa 1056

                                                                        
Query: 404  agaagattataagctctcttcgatagatcaccgccggttccttttatctgctttattata 463
            |||||||||||| ||||| |    ||||||||   || |||||||| ||||||   ||||
Sbjct: 1055 agaagattataaactctcctgtgcagatcaccagtgggtccttttagctgcttcgctata 996

                                                                        
Query: 464  gcaaccaatctttcatataaatcggcttcctctttcattaatggaacacgaaaaccccgg 523
             || ||| || |||||| | ||| |||||||| ||| ||| ||||| |||| ||||||| 
Sbjct: 995  acagccagtcgttcatacagatcagcttcctccttcgttagtggaatacgataaccccga 936

                                    
Query: 524  ttttccagcgcctccactattctc 547
            || || |  |||||||||||||||
Sbjct: 935  ttctctaatgcctccactattctc 912
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 110/131 (83%)
 Strand = Plus / Minus

                                                                            
Query: 164      tacatcttaaatgcccttctcctggaactgtcttcggccatatccgtgtcttccgaaagt 223
                |||||||| |||||||||||||    ||||||||| ||||| ||||||||||||||||||
Sbjct: 11565377 tacatcttcaatgcccttctcccaacactgtcttctgccatgtccgtgtcttccgaaagt 11565318

                                                                            
Query: 224      acaatttccacgtccctggtatccctttttaatacattgcctaacttcgcaactgcttcg 283
                |  ||||||| ||| || ||||| ||||| |  |||||||| ||||| ||||| ||||| 
Sbjct: 11565317 attatttccaagtctcttgtatctcttttcatcacattgcccaacttggcaacagcttcc 11565258

                           
Query: 284      gtctgctgttg 294
                ||||| |||||
Sbjct: 11565257 gtctgttgttg 11565247



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                       
Query: 383      gcaagaagacgtgaggttgaaagaagattataagctctc 421
                |||||||| || || |||||||||||||||||| |||||
Sbjct: 11565059 gcaagaaggcgagaagttgaaagaagattataaactctc 11565021



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                            
Query: 475      ttcatataaatcggcttcctctttcattaatggaacacgaaaaccccggttttccagcgc 534
                |||||| | ||| |||||||| ||| ||| ||||| |||| ||||||| || || |  ||
Sbjct: 11564870 ttcatacagatcagcttcctccttcgttagtggaatacgataaccccgattctctaatgc 11564811

                               
Query: 535      ctccactattctcat 549
                |||||||||||||||
Sbjct: 11564810 ctccactattctcat 11564796
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>dbj|AP005830.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1120F06
          Length = 186712

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 110/131 (83%)
 Strand = Plus / Minus

                                                                          
Query: 164    tacatcttaaatgcccttctcctggaactgtcttcggccatatccgtgtcttccgaaagt 223
              |||||||| |||||||||||||    ||||||||| ||||| ||||||||||||||||||
Sbjct: 129035 tacatcttcaatgcccttctcccaacactgtcttctgccatgtccgtgtcttccgaaagt 128976

                                                                          
Query: 224    acaatttccacgtccctggtatccctttttaatacattgcctaacttcgcaactgcttcg 283
              |  ||||||| ||| || ||||| ||||| |  |||||||| ||||| ||||| ||||| 
Sbjct: 128975 attatttccaagtctcttgtatctcttttcatcacattgcccaacttggcaacagcttcc 128916

                         
Query: 284    gtctgctgttg 294
              ||||| |||||
Sbjct: 128915 gtctgttgttg 128905



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                     
Query: 383    gcaagaagacgtgaggttgaaagaagattataagctctc 421
              |||||||| || || |||||||||||||||||| |||||
Sbjct: 128717 gcaagaaggcgagaagttgaaagaagattataaactctc 128679



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                          
Query: 475    ttcatataaatcggcttcctctttcattaatggaacacgaaaaccccggttttccagcgc 534
              |||||| | ||| |||||||| ||| ||| ||||| |||| ||||||| || || |  ||
Sbjct: 128528 ttcatacagatcagcttcctccttcgttagtggaatacgataaccccgattctctaatgc 128469

                             
Query: 535    ctccactattctcat 549
              |||||||||||||||
Sbjct: 128468 ctccactattctcat 128454
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>dbj|AP006479.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1272H04
          Length = 87113

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 110/131 (83%)
 Strand = Plus / Minus

                                                                         
Query: 164   tacatcttaaatgcccttctcctggaactgtcttcggccatatccgtgtcttccgaaagt 223
             |||||||| |||||||||||||    ||||||||| ||||| ||||||||||||||||||
Sbjct: 10749 tacatcttcaatgcccttctcccaacactgtcttctgccatgtccgtgtcttccgaaagt 10690

                                                                         
Query: 224   acaatttccacgtccctggtatccctttttaatacattgcctaacttcgcaactgcttcg 283
             |  ||||||| ||| || ||||| ||||| |  |||||||| ||||| ||||| ||||| 
Sbjct: 10689 attatttccaagtctcttgtatctcttttcatcacattgcccaacttggcaacagcttcc 10630

                        
Query: 284   gtctgctgttg 294
             ||||| |||||
Sbjct: 10629 gtctgttgttg 10619



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 383   gcaagaagacgtgaggttgaaagaagattataagctctc 421
             |||||||| || || |||||||||||||||||| |||||
Sbjct: 10431 gcaagaaggcgagaagttgaaagaagattataaactctc 10393



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                         
Query: 475   ttcatataaatcggcttcctctttcattaatggaacacgaaaaccccggttttccagcgc 534
             |||||| | ||| |||||||| ||| ||| ||||| |||| ||||||| || || |  ||
Sbjct: 10242 ttcatacagatcagcttcctccttcgttagtggaatacgataaccccgattctctaatgc 10183

                            
Query: 535   ctccactattctcat 549
             |||||||||||||||
Sbjct: 10182 ctccactattctcat 10168
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>gb|AY106000.1| Zea mays PCO136000 mRNA sequence
          Length = 868

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                 
Query: 442 tccttttatctgctttattatagcaaccaatctttcatataaatcggcttcctc 495
           |||||||| | |||||| ||||||||||||||||||||| || || ||||||||
Sbjct: 460 tccttttagccgctttaatatagcaaccaatctttcatacaagtcagcttcctc 407



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 68/83 (81%)
 Strand = Plus / Minus

                                                                       
Query: 230 tccacgtccctggtatccctttttaatacattgcctaacttcgcaactgcttcggtctgc 289
           |||| |||| || ||||||| || || ||||| |||| ||| |||||||| || || || 
Sbjct: 672 tccatgtccntgatatccctcttcaacacattacctagcttggcaactgcctctgtttgt 613

                                  
Query: 290 tgttgcaatgcctcaagaagctc 312
           ||||| || ||||||||||||||
Sbjct: 612 tgttgtaaggcctcaagaagctc 590
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>gb|AC122242.2| Mus musculus BAC clone RP23-147P2 from chromosome 13, complete sequence
          Length = 208096

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 491   tcctctttcattaatggaacac 512
             ||||||||||||||||||||||
Sbjct: 57827 tcctctttcattaatggaacac 57806
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>gb|AC138792.2| Mus musculus BAC clone RP23-235I2 from chromosome 8, complete
            sequence
          Length = 181841

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 400  tgaaagaagattataagctctcttc 424
            ||||| |||||||||||||||||||
Sbjct: 8027 tgaaataagattataagctctcttc 8051
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>ref|XM_990462.1| PREDICTED: Mus musculus cDNA sequence BC042720 (BC042720), mRNA
          Length = 12342

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 48    aacagttaagataaaagttca 68
             |||||||||||||||||||||
Sbjct: 10352 aacagttaagataaaagttca 10372
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>ref|XM_983133.1| PREDICTED: Mus musculus cDNA sequence BC042720 (BC042720), mRNA
          Length = 10431

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 48   aacagttaagataaaagttca 68
            |||||||||||||||||||||
Sbjct: 8443 aacagttaagataaaagttca 8463
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>ref|XM_893763.2| PREDICTED: Mus musculus cDNA sequence BC042720 (BC042720), mRNA
          Length = 13045

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 48    aacagttaagataaaagttca 68
             |||||||||||||||||||||
Sbjct: 11055 aacagttaagataaaagttca 11075
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>gb|AC141566.4| Mus musculus BAC clone RP23-89G14 from chromosome 7, complete sequence
          Length = 236600

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 306   gaagctcagaaacattctgct 326
             |||||||||||||||||||||
Sbjct: 97250 gaagctcagaaacattctgct 97270
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>gb|AC117238.3| Mus musculus BAC clone RP24-82N17 from 1, complete sequence
          Length = 214280

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 48    aacagttaagataaaagttca 68
             |||||||||||||||||||||
Sbjct: 61966 aacagttaagataaaagttca 61986
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>dbj|AK138673.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched
            library, clone:A330105C22 product:hypothetical protein,
            full insert sequence
          Length = 3043

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 48   aacagttaagataaaagttca 68
            |||||||||||||||||||||
Sbjct: 1772 aacagttaagataaaagttca 1792
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>dbj|AK037154.1| Mus musculus 6 days neonate skin cDNA, RIKEN full-length enriched
            library, clone:A030001O10 product:unclassifiable, full
            insert sequence
          Length = 2867

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 48   aacagttaagataaaagttca 68
            |||||||||||||||||||||
Sbjct: 1991 aacagttaagataaaagttca 1971
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>gb|AC079922.5| Homo sapiens BAC clone RP11-368A17 from 2, complete sequence
          Length = 140678

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 178   ccttctcctggaactgtcttc 198
             |||||||||||||||||||||
Sbjct: 95181 ccttctcctggaactgtcttc 95201
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>emb|AL110477.2|CEY113G7B Caenorhabditis elegans YAC Y113G7B, complete sequence
          Length = 88628

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 13    tcaaattgatttcaaattttg 33
             |||||||||||||||||||||
Sbjct: 45337 tcaaattgatttcaaattttg 45317
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>gb|AC118589.10| Mus musculus chromosome 1, clone RP23-198G19, complete sequence
          Length = 217156

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 48    aacagttaagataaaagttca 68
             |||||||||||||||||||||
Sbjct: 64800 aacagttaagataaaagttca 64780
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>tpe|BN000002.1|HSA000002 TPA: TPA_exp: Homo sapiens complete interleukin-1 gene cluster (Draft
            Contig) including IL1A (IL1F1), IL1B (IL1F2), IL1RN
            (IL1F3), IL1F5, IL1F6, IL1F7, IL1F8, IL1F9, IL1F10
          Length = 495475

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 178  ccttctcctggaactgtcttc 198
            |||||||||||||||||||||
Sbjct: 3692 ccttctcctggaactgtcttc 3712
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>gb|AC129321.5| Mus musculus BAC clone RP24-160I20 from 8, complete sequence
          Length = 198439

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 400    tgaaagaagattataagctctcttc 424
              ||||| |||||||||||||||||||
Sbjct: 174627 tgaaataagattataagctctcttc 174651
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>emb|AL132641.3|CNS01DT6 Human chromosome 14 DNA sequence BAC C-3175A2 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 136603

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 466   aaccaatctttcatataaatc 486
             |||||||||||||||||||||
Sbjct: 71347 aaccaatctttcatataaatc 71327
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>gb|AC136525.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0585E02,
             complete sequence
          Length = 138677

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 303   caagaagctcagaaacattc 322
             ||||||||||||||||||||
Sbjct: 67146 caagaagctcagaaacattc 67165
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>gb|AC130724.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0409G01,
            complete sequence
          Length = 143263

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 303  caagaagctcagaaacattc 322
            ||||||||||||||||||||
Sbjct: 9064 caagaagctcagaaacattc 9083
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>gb|AC017005.7| Homo sapiens BAC clone RP11-100J21 from Y, complete sequence
          Length = 94921

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    tgatttcaaattttggctta 38
             ||||||||||||||||||||
Sbjct: 59644 tgatttcaaattttggctta 59663
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>emb|CR730460.2|CNS0GQKH Tetraodon nigroviridis full-length cDNA
          Length = 1716

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 78   cagaaaacacaaaaacacaa 97
            ||||||||||||||||||||
Sbjct: 1414 cagaaaacacaaaaacacaa 1395
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>gb|AC145476.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1023E01,
             complete sequence
          Length = 140322

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 303   caagaagctcagaaacattc 322
             ||||||||||||||||||||
Sbjct: 93913 caagaagctcagaaacattc 93932
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>dbj|BS000545.1| Pan troglodytes chromosome Y clone:PTB-221L15, complete sequences
          Length = 161490

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    tgatttcaaattttggctta 38
             ||||||||||||||||||||
Sbjct: 15783 tgatttcaaattttggctta 15802
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 19       tgatttcaaattttggctta 38
                ||||||||||||||||||||
Sbjct: 10478136 tgatttcaaattttggctta 10478155



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 19      tgatttcaaattttggctta 38
               ||||||||||||||||||||
Sbjct: 2511075 tgatttcaaattttggctta 2511094
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>gb|AC069130.6|AC069130 Homo sapiens BAC clone RP11-468D10 from Y, complete sequence
          Length = 66874

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    tgatttcaaattttggctta 38
             ||||||||||||||||||||
Sbjct: 30192 tgatttcaaattttggctta 30211
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 303      caagaagctcagaaacattc 322
                ||||||||||||||||||||
Sbjct: 13638005 caagaagctcagaaacattc 13638024
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>gb|AC084213.19|AC084213 Mus musculus 1 BAC RP23-470F8 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 109501

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 285   tctgctgttgcaatgcctca 304
             ||||||||||||||||||||
Sbjct: 31740 tctgctgttgcaatgcctca 31721
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>gb|AC073649.3|AC073649 Homo sapiens clone RP11-823D8, complete sequence
          Length = 120951

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    tgatttcaaattttggctta 38
             ||||||||||||||||||||
Sbjct: 19087 tgatttcaaattttggctta 19068
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>gb|AC015978.4|AC015978 Homo sapiens BAC clone RP11-529I21 from Y, complete sequence
          Length = 178780

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    tgatttcaaattttggctta 38
             ||||||||||||||||||||
Sbjct: 43152 tgatttcaaattttggctta 43133
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>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
               (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 19      tgatttcaaattttggctta 38
               ||||||||||||||||||||
Sbjct: 4041818 tgatttcaaattttggctta 4041837



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 19      tgatttcaaattttggctta 38
               ||||||||||||||||||||
Sbjct: 2006499 tgatttcaaattttggctta 2006480
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>ref|NG_004636.1| Homo sapiens chromosome Y palindromes P4 and P5 (P4-P5@) on chromosome Y
          Length = 1351786

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     tgatttcaaattttggctta 38
              ||||||||||||||||||||
Sbjct: 916482 tgatttcaaattttggctta 916501
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>gb|AC138111.3| Mus musculus BAC clone RP24-262B6 from 1, complete sequence
          Length = 138380

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 285    tctgctgttgcaatgcctca 304
              ||||||||||||||||||||
Sbjct: 123113 tctgctgttgcaatgcctca 123132
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>emb|AL731857.9| Mouse DNA sequence from clone RP23-106A3 on chromosome 2, complete
              sequence
          Length = 157220

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 219    aaagtacaatttccacgtccctgg 242
              |||||||||||||||| |||||||
Sbjct: 125863 aaagtacaatttccacctccctgg 125840


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,346,138
Number of Sequences: 3902068
Number of extensions: 5346138
Number of successful extensions: 108010
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107727
Number of HSP's gapped (non-prelim): 276
length of query: 555
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 532
effective length of database: 17,143,297,704
effective search space: 9120234378528
effective search space used: 9120234378528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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