ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart11c12 |
|---|---|
| Clone Library Name | barley_pub |
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 52.0 bits (123), Expect = 9e-07 Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 11/121 (9%) Frame = -1 Query: 491 LQRKIVELRKKHADVRIMYADYYTPAIQFVLHPDKWGMLRQKPRACCGAPGVGVYNFNLT 312 L+ + +LRK ++ D Y+ P+K G + P C G G YNF++T Sbjct: 261 LKEIVAQLRKDLPLATFVHVDIYSVKYSLFSEPEKHGF--EFPLITCCGYG-GKYNFSVT 317 Query: 311 SKCGEP-----------GAYACDDPSNHWSWDGIHLTKAAYGHIARGWLYGPFADPPIVE 165 + CG+ G+ AC PS +WDG H T+AA + G F+DPP+ Sbjct: 318 APCGDTVTADDGTKIVVGSCAC--PSVRVNWDGAHYTEAANEYFFDQISTGAFSDPPVPL 375 Query: 164 N 162 N Sbjct: 376 N 376
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 48.9 bits (115), Expect = 7e-06 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 9/99 (9%) Frame = -1 Query: 494 ALQRKIVELRKKHADVRIMYADYYTPAIQFVLHPDKWGMLRQKPRACCGAPGVGVYNFNL 315 AL++ ++ELR ++ I Y D Y+ + +H G + +CCG G YN+N Sbjct: 258 ALKQAVIELRSSLSEAAITYVDVYSLKHELFVHAQGHGF-KGSLVSCCGHGGK--YNYNK 314 Query: 314 TSKCGEPGAYA---------CDDPSNHWSWDGIHLTKAA 225 CG CD+P WDG+H T+AA Sbjct: 315 GIGCGMKKIVKGKEVYIGKPCDEPDKAVVWDGVHFTQAA 353
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 35.8 bits (81), Expect = 0.064 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Frame = -1 Query: 473 ELRKKHADVRIMYADYYTPAIQFVLHPDKWGMLRQKPRACC--GAPGVGVYNFNLTSKCG 300 +L K + +Y D YT Q + P +G K + CC G G TSK Sbjct: 440 QLSKTLPNSTFVYMDIYTIISQMLETPAAYGFEETK-KPCCKTGLLSAGALCKKSTSKI- 497 Query: 299 EPGAYACDDPSNHWSWDGIHLTKAAY 222 C + S++ WDG+H T+ AY Sbjct: 498 ------CPNTSSYLFWDGVHPTQRAY 517
>TSN10_HUMAN (Q9H1Z9) Tetraspanin-10 (Tspan-10) (Oculospanin)| Length = 355 Score = 32.0 bits (71), Expect = 0.92 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Frame = -1 Query: 449 VRIMYADYYT-PAIQFVLHPDKWGMLRQKPRACCGAPGVGVYNFNLTSKCGEPGAYACDD 273 +R+ A Y P ++F+L + G+ CCGA + NL C PG AC Sbjct: 186 LRVAIAHYQDDPDLRFLLDQVQLGL------RCCGAASYQDWQQNLYFNCSSPGVQACSL 239 Query: 272 PSN 264 P++ Sbjct: 240 PAS 242
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 31.2 bits (69), Expect = 1.6 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Frame = -1 Query: 473 ELRKKHADVRIMYADYYTPAIQFVLHPDKWGMLRQKPRACC--GAPGVGVYNFNLTSKCG 300 +L K + I+Y D Y+ + + P+ +G K + CC G GV+ C Sbjct: 357 QLSKTLPNSTIVYGDIYSIFSKMLESPEDYGFEEIK-KPCCKIGLTKGGVF-------CK 408 Query: 299 EPGAYACDDPSNHWSWDGIHLTKAAY 222 E + S++ WDG+H ++ AY Sbjct: 409 ERTLKNMSNASSYLFWDGLHPSQRAY 434
>SYI_XANCP (Q8PBG6) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 943 Score = 31.2 bits (69), Expect = 1.6 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Frame = +1 Query: 73 RFHFSTYIQ*PMCRCHVRKKQPSLCYSRFRFSTMGGSAKGP*SHPLAMWP*A-AFVRWMP 249 R+ F+ +Q + C V L ++ R TM A+G S AM+ A AFVRW+ Sbjct: 721 RYDFAEIVQALLNFCSVDLGSLYLDVTKDRLYTMAEDARGRRSAQSAMYHVAEAFVRWIA 780 Query: 250 SQLQWLDGSSHAYAPG 297 L + AY PG Sbjct: 781 PVLSFTAEELWAYLPG 796
>SYI_XANC8 (Q4US40) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 943 Score = 31.2 bits (69), Expect = 1.6 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Frame = +1 Query: 73 RFHFSTYIQ*PMCRCHVRKKQPSLCYSRFRFSTMGGSAKGP*SHPLAMWP*A-AFVRWMP 249 R+ F+ +Q + C V L ++ R TM A+G S AM+ A AFVRW+ Sbjct: 721 RYDFAEIVQALLNFCSVDLGSLYLDVTKDRLYTMAEDARGRRSAQSAMYHVAEAFVRWIA 780 Query: 250 SQLQWLDGSSHAYAPG 297 L + AY PG Sbjct: 781 PVLSFTAEELWAYLPG 796
>SYI_XANC5 (Q3BW42) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 943 Score = 31.2 bits (69), Expect = 1.6 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Frame = +1 Query: 73 RFHFSTYIQ*PMCRCHVRKKQPSLCYSRFRFSTMGGSAKGP*SHPLAMWP*A-AFVRWMP 249 R+ F+ +Q + C V L ++ R TM A+G S AM+ A AFVRW+ Sbjct: 721 RYDFAEIVQALLNFCSVDLGSLYLDVTKDRLYTMAEDARGRRSAQSAMYHVAEAFVRWIA 780 Query: 250 SQLQWLDGSSHAYAPGSPHLD 312 L + +Y PG H+D Sbjct: 781 PVLSFTAEELWSYLPGQ-HVD 800
>SYI_XYLFT (Q87BL5) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 943 Score = 30.8 bits (68), Expect = 2.1 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Frame = +1 Query: 70 TRFHFSTYIQ*PMCRCHVRKKQPSLCYSRFRFSTMGGSAKGP*SHPLAMWP*-AAFVRWM 246 TR+ F+ +Q + C V L ++ R TM A G S AM+ AAFVRW+ Sbjct: 720 TRYDFAEIVQTILNFCSVDLGSLYLDVTKDRLYTMREDAPGRRSAQTAMYHLTAAFVRWI 779 Query: 247 PSQLQWLDGSSHAYAPGSPHLD 312 L + +Y PG H D Sbjct: 780 APILSFTADELWSYLPGD-HAD 800
>SYI_XYLFA (Q9PAS7) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 943 Score = 30.8 bits (68), Expect = 2.1 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 1/82 (1%) Frame = +1 Query: 70 TRFHFSTYIQ*PMCRCHVRKKQPSLCYSRFRFSTMGGSAKGP*SHPLAMWP*-AAFVRWM 246 TR+ F+ +Q + C V L ++ R TM A G S AM+ AAFVRW+ Sbjct: 720 TRYDFAEIVQTILNFCSVDLGSLYLDVTKDRLYTMREDAPGRRSAQTAMYHLTAAFVRWI 779 Query: 247 PSQLQWLDGSSHAYAPGSPHLD 312 L + +Y PG H D Sbjct: 780 APILSFTADELWSYLPGD-HAD 800
>SYI_XANAC (Q8PN19) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 943 Score = 30.8 bits (68), Expect = 2.1 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Frame = +1 Query: 73 RFHFSTYIQ*PMCRCHVRKKQPSLCYSRFRFSTMGGSAKGP*SHPLAMWP*A-AFVRWMP 249 R+ F+ +Q + C V L ++ R TM A+G S AM+ A AFVRW+ Sbjct: 721 RYDFAEIVQALLNFCSVDLGSLYLDVTKDRLYTMAEDARGRRSAQSAMYHVAEAFVRWIA 780 Query: 250 SQLQWLDGSSHAYAPGSPHLD 312 L + Y PG H+D Sbjct: 781 PVLSFTAEELWGYLPGK-HVD 800
>TSN10_MOUSE (Q8VCF5) Tetraspanin-10 (Tspan-10) (Oculospanin)| Length = 331 Score = 30.0 bits (66), Expect = 3.5 Identities = 16/52 (30%), Positives = 23/52 (44%) Frame = -1 Query: 419 PAIQFVLHPDKWGMLRQKPRACCGAPGVGVYNFNLTSKCGEPGAYACDDPSN 264 P + F+L + G+ CCGA + NL C PG AC P++ Sbjct: 195 PDLHFLLDQVQLGL------QCCGAVSYQDWQQNLYFNCSSPGVQACSLPAS 240
>CRSP2_HUMAN (O60244) CRSP complex subunit 2 (Cofactor required for Sp1| transcriptional activation subunit 2) (Transcriptional coactivator CRSP150) (Vitamin D3 receptor-interacting protein complex 150 kDa component) (DRIP150) (Thyroid hormone receptor-ass Length = 1454 Score = 29.6 bits (65), Expect = 4.6 Identities = 17/51 (33%), Positives = 22/51 (43%) Frame = +1 Query: 238 RWMPSQLQWLDGSSHAYAPGSPHLDVRLKLYTPTPGAPQHALGFCLSIPHL 390 +W P +LQ L+ G P L +T GAP H L C+ I L Sbjct: 1272 QWKPDELQVLEKFFETRVAGPPFKANTLIAFTKLLGAPTHILRDCVHIMKL 1322
>SYI_XANOR (Q5H2E1) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 943 Score = 29.3 bits (64), Expect = 6.0 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Frame = +1 Query: 73 RFHFSTYIQ*PMCRCHVRKKQPSLCYSRFRFSTMGGSAKGP*SHPLAMWP*A-AFVRWMP 249 R+ F+ +Q + C V L ++ R TM A+G S AM+ A AFVRW+ Sbjct: 721 RYDFAEIVQALLNFCSVDLGSLYLDVTKDRLYTMAEDARGRRSAQSAMYHVAEAFVRWIA 780 Query: 250 SQLQWLDGSSHAYAPG 297 + + Y PG Sbjct: 781 PVMSFTADELWGYLPG 796
>PMP1_CHLPN (Q9Z9G5) Probable outer membrane protein pmp1 precursor (Polymorphic| membrane protein 1) (Outer membrane protein 6) Length = 922 Score = 29.3 bits (64), Expect = 6.0 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%) Frame = +1 Query: 28 AQHSTRHACVFFSLTRFHFSTYIQ*PM-----CRCHVRKKQPSLCYSRFRF 165 A H +RHA V R+HF+ Y + CR H R + C S+FRF Sbjct: 873 AAHVSRHAFVGSGTGRYHFNDYTELLCRGSIECRPHARNYNIN-CGSKFRF 922
>Y2075_MYCTU (Q10683) Hypothetical protein Rv2075c/MT2135| Length = 487 Score = 28.9 bits (63), Expect = 7.8 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Frame = -1 Query: 386 WGMLRQKPRACCGAPGV-GVYNFNLTSKCGEPGAYACDDPSNHWS 255 W +PRA GA + G + + CG+P AC D + W+ Sbjct: 391 WSWAPDEPRAGAGACALQGADGRWVAASCGDPHPAACRDAAGRWT 435
>GUNY_DICD3 (P27032) Minor endoglucanase Y precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase Y) (Cellulase Y) (EGY) Length = 332 Score = 28.9 bits (63), Expect = 7.8 Identities = 17/52 (32%), Positives = 21/52 (40%) Frame = -1 Query: 266 NHWSWDGIHLTKAAYGHIARGWLYGPFADPPIVENRNLE*HREGCFLRTWHL 111 N W+W HL G W Y P A P+V+ N +G L W L Sbjct: 73 NLWNWTQSHLRNTTSGLFY--WRYDPSAANPVVDKNNAS---DGDVLIAWAL 119
>INHA_HUMAN (P05111) Inhibin alpha chain precursor| Length = 366 Score = 28.9 bits (63), Expect = 7.8 Identities = 16/55 (29%), Positives = 21/55 (38%) Frame = +1 Query: 103 PMCRCHVRKKQPSLCYSRFRFSTMGGSAKGP*SHPLAMWP*AAFVRWMPSQLQWL 267 P+C C R + + R G + S PL WP W PS L+ L Sbjct: 201 PLCTCSARPEATPFLVAHTRTRPPSGGERARRSTPLMSWP------WSPSALRLL 249 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,324,016 Number of Sequences: 219361 Number of extensions: 1209509 Number of successful extensions: 3466 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3380 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3464 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
