ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart11c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_463549.1| Oryza sativa (japonica cultivar-group), predic... 74 4e-10
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
3gb|AF229199.1|AF229199 Oryza sativa chromosome 1 clone OSJNBa004... 74 4e-10
4dbj|AP003379.2| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
5dbj|AK121662.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 4e-10
6dbj|AK060676.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 4e-10
7gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome... 62 1e-06
8gb|AC124836.2| Oryza sativa (japonica cultivar-group) chromosome... 62 1e-06
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
10dbj|AK060267.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
11dbj|D12634.1|RICYCYTC Oryza sativa (japonica cultivar-group) mRN... 62 1e-06
12gb|M63704.1|RICCYTC Rice cytochrome c (OsCc-1) gene, complete cds 62 1e-06
13emb|AJ539068.1|NTA539068 Nicotiana tabacum cDNA-AFLP-fragment BT... 54 4e-04
14gb|AY466606.1| Helianthus annuus cytochrome c mRNA, complete cds 48 0.022
15gb|L77113.1|HNNCYTC Helianthus annuus L. cytochrome c (cytc1) mR... 48 0.022
16ref|NM_102131.3| Arabidopsis thaliana unknown protein AT1G22850 ... 44 0.34
17ref|NM_102130.2| Arabidopsis thaliana electron carrier/ electron... 44 0.34
18gb|AC146549.8| Medicago truncatula clone mth2-7p18, complete seq... 44 0.34
19gb|AC146709.11| Medicago truncatula clone mth2-90m14, complete s... 44 0.34
20emb|AL357080.13| Human DNA sequence from clone RP11-432L12 on ch... 44 0.34
21gb|AY114580.1| Arabidopsis thaliana cytochrome C (At1g22840) mRN... 44 0.34
22gb|AY062853.1| Arabidopsis thaliana cytochrome C (At1g22840; F19... 44 0.34
23gb|AY087108.1| Arabidopsis thaliana clone 31770 mRNA, complete s... 44 0.34
24gb|AF000657.1|ATAF000657 Arabidopsis thaliana BAC F19G10, comple... 44 0.34
25gb|AC155340.1| Brassica rapa subsp. pekinensis chromosome Cytoge... 44 0.34
26emb|CR762438.7| Zebrafish DNA sequence from clone CH211-12O9 in ... 42 1.3
27gb|AC148765.24| Medicago truncatula clone mth2-34f9, complete se... 42 1.3
28gb|AC104126.2| Homo sapiens chromosome 5 clone RP11-526F3, compl... 42 1.3
29gb|AC010261.5| Homo sapiens chromosome 5 clone CTC-459M5, comple... 42 1.3
30gb|AC124029.15| Mus musculus chromosome 1, clone RP23-238E7, com... 42 1.3
31emb|CR392343.29| Zebrafish DNA sequence from clone CH211-195G6 i... 42 1.3
32gb|AC102045.14| Mus musculus chromosome 1, clone RP23-335P21, co... 42 1.3
33gb|AY697432.1| Lactobacillus parabuchneri strain 33 glucansucras... 40 5.3
34gb|AC112682.12| Mus musculus chromosome 6, clone RP23-332K10, co... 40 5.3
35gb|AC107663.10| Mus musculus chromosome 13, clone RP23-99G9, com... 40 5.3
36gb|AC129206.3| Mus musculus BAC clone RP24-269P22 from chromosom... 40 5.3
37emb|AL392108.4| Human DNA sequence from clone RP11-551P18 on chr... 40 5.3
38emb|AL031122.3|HS503N11 Human DNA sequence from clone RP3-503N11... 40 5.3
39emb|BX927152.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 5.3
40emb|BX324156.6| Zebrafish DNA sequence from clone CH211-215C3 in... 40 5.3
41gb|AC024900.20| Homo sapiens 12 BAC RP11-549E9 (Roswell Park Can... 40 5.3
42ref|XM_691086.1| PREDICTED: Danio rerio similar to Elongation fa... 40 5.3
43gb|AC153139.5| Mus musculus BAC clone RP23-411M4 from chromosome... 40 5.3
44dbj|AK049471.1| Mus musculus 7 days embryo whole body cDNA, RIKE... 40 5.3
45gb|AC007603.5| Homo sapiens chromosome 16 clone RP11-305A4, comp... 40 5.3
46dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 40 5.3
47gb|AC175664.2| Mus musculus BAC clone RP24-391A3 from chromosome... 40 5.3
48emb|AL954339.10| Zebrafish DNA sequence from clone CH211-221J21 ... 40 5.3
49emb|BX469897.6| Zebrafish DNA sequence from clone CH211-39F22 in... 40 5.3
50dbj|AB017069.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.3
51dbj|AP000894.6| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 5.3
52gb|AF017367.1|AF017367 Oryza sativa cytochrome C mRNA, complete cds 40 5.3
53emb|AL731735.14| Mouse DNA sequence from clone RP23-139P21 on ch... 40 5.3 
>ref|XM_463549.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 336

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                
Query: 341 gtggctttcttcaggtacgcaatgagatcagcacggtcctgtggcttcttcag 393
           ||||| ||||||||||| || ||||||||||||||||||||||||| ||||||
Sbjct: 329 gtggcgttcttcaggtatgcgatgagatcagcacggtcctgtggctgcttcag 277
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                     
Query: 341      gtggctttcttcaggtacgcaatgagatcagcacggtcctgtggcttcttcag 393
                ||||| ||||||||||| || ||||||||||||||||||||||||| ||||||
Sbjct: 38439384 gtggcgttcttcaggtatgcgatgagatcagcacggtcctgtggctgcttcag 38439332
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>gb|AF229199.1|AF229199 Oryza sativa chromosome 1 clone OSJNBa0048I01, complete sequence
          Length = 193444

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                  
Query: 341   gtggctttcttcaggtacgcaatgagatcagcacggtcctgtggcttcttcag 393
             ||||| ||||||||||| || ||||||||||||||||||||||||| ||||||
Sbjct: 32481 gtggcgttcttcaggtatgcgatgagatcagcacggtcctgtggctgcttcag 32429
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>dbj|AP003379.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0408G07
          Length = 126631

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                  
Query: 341   gtggctttcttcaggtacgcaatgagatcagcacggtcctgtggcttcttcag 393
             ||||| ||||||||||| || ||||||||||||||||||||||||| ||||||
Sbjct: 24799 gtggcgttcttcaggtatgcgatgagatcagcacggtcctgtggctgcttcag 24747
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>dbj|AK121662.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033064H20, full
           insert sequence
          Length = 696

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                
Query: 341 gtggctttcttcaggtacgcaatgagatcagcacggtcctgtggcttcttcag 393
           ||||| ||||||||||| || ||||||||||||||||||||||||| ||||||
Sbjct: 402 gtggcgttcttcaggtatgcgatgagatcagcacggtcctgtggctgcttcag 350
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>dbj|AK060676.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-B03, full
           insert sequence
          Length = 295

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                
Query: 341 gtggctttcttcaggtacgcaatgagatcagcacggtcctgtggcttcttcag 393
           ||||| ||||||||||| || ||||||||||||||||||||||||| ||||||
Sbjct: 109 gtggcgttcttcaggtatgcgatgagatcagcacggtcctgtggctgcttcag 57
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>gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0426G01,
              complete sequence
          Length = 173074

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                     
Query: 338    gaggtggctttcttcaggtacgcaatgagatcagcacggtcctgtggcttcttca 392
              ||||| |||| ||||||||| | ||| ||||||||||| ||||||||||||||||
Sbjct: 159501 gaggttgcttccttcaggtaggaaataagatcagcacgctcctgtggcttcttca 159447



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 209    caagataattgtctcgtggat 229
              |||||||||||||||||||||
Sbjct: 159626 caagataattgtctcgtggat 159606
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>gb|AC124836.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0092E21, complete sequence
          Length = 132649

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                    
Query: 338   gaggtggctttcttcaggtacgcaatgagatcagcacggtcctgtggcttcttca 392
             ||||| |||| ||||||||| | ||| ||||||||||| ||||||||||||||||
Sbjct: 31235 gaggttgcttccttcaggtaggaaataagatcagcacgctcctgtggcttcttca 31181



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 209   caagataattgtctcgtggat 229
             |||||||||||||||||||||
Sbjct: 31360 caagataattgtctcgtggat 31340
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                       
Query: 338      gaggtggctttcttcaggtacgcaatgagatcagcacggtcctgtggcttcttca 392
                ||||| |||| ||||||||| | ||| ||||||||||| ||||||||||||||||
Sbjct: 20487756 gaggttgcttccttcaggtaggaaataagatcagcacgctcctgtggcttcttca 20487702



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 209      caagataattgtctcgtggat 229
                |||||||||||||||||||||
Sbjct: 20487881 caagataattgtctcgtggat 20487861
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>dbj|AK060267.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-005-D04, full
           insert sequence
          Length = 742

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 338 gaggtggctttcttcaggtacgcaatgagatcagcacggtcctgtggcttcttca 392
           ||||| |||| ||||||||| | ||| ||||||||||| ||||||||||||||||
Sbjct: 422 gaggttgcttccttcaggtaggaaataagatcagcacgctcctgtggcttcttca 368



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 209 caagataattgtctcgtggat 229
           |||||||||||||||||||||
Sbjct: 547 caagataattgtctcgtggat 527
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>dbj|D12634.1|RICYCYTC Oryza sativa (japonica cultivar-group) mRNA for cytochrome C,
           complete cds
          Length = 654

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 338 gaggtggctttcttcaggtacgcaatgagatcagcacggtcctgtggcttcttca 392
           ||||| |||| ||||||||| | ||| ||||||||||| ||||||||||||||||
Sbjct: 340 gaggttgcttccttcaggtaggaaataagatcagcacgctcctgtggcttcttca 286



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 209 caagataattgtctcgtggat 229
           |||||||||||||||||||||
Sbjct: 465 caagataattgtctcgtggat 445
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>gb|M63704.1|RICCYTC Rice cytochrome c (OsCc-1) gene, complete cds
          Length = 2408

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                   
Query: 338  gaggtggctttcttcaggtacgcaatgagatcagcacggtcctgtggcttcttca 392
            ||||| |||| ||||||||| | ||| ||||||||||| ||||||||||||||||
Sbjct: 2219 gaggttgcttccttcaggtaggaaataagatcagcacgctcctgtggcttcttca 2165



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 209  caagataattgtctcgtggat 229
            |||||||||||||||||||||
Sbjct: 2344 caagataattgtctcgtggat 2324
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>emb|AJ539068.1|NTA539068 Nicotiana tabacum cDNA-AFLP-fragment BT42-M1-010
          Length = 450

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 350 ttcaggtacgcaatgagatcagcacggtcctgtggcttcttca 392
           |||||||| |||||||| || ||||| ||||||||||||||||
Sbjct: 269 ttcaggtaggcaatgaggtctgcacgctcctgtggcttcttca 227
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>gb|AY466606.1| Helianthus annuus cytochrome c mRNA, complete cds
          Length = 684

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 348 tcttcaggtacgcaatgagatcagcacggtcctgtggctt 387
           |||||| ||| ||||||||||| ||||| |||||||||||
Sbjct: 443 tcttcaagtatgcaatgagatctgcacgctcctgtggctt 404
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>gb|L77113.1|HNNCYTC Helianthus annuus L. cytochrome c (cytc1) mRNA, complete cds
          Length = 559

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 348 tcttcaggtacgcaatgagatcagcacggtcctgtggctt 387
           |||||| ||| ||||||||||| ||||| |||||||||||
Sbjct: 335 tcttcaagtatgcaatgagatctgcacgctcctgtggctt 296
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>ref|NM_102131.3| Arabidopsis thaliana unknown protein AT1G22850 mRNA, complete cds
          Length = 1563

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                      
Query: 349  cttcaggtacgcaatgagatcagcacggtcctgtggcttctt 390
            ||||| ||| || ||||||||||||||||| || ||||||||
Sbjct: 1500 cttcaagtaggcgatgagatcagcacggtcttgcggcttctt 1541
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>ref|NM_102130.2| Arabidopsis thaliana electron carrier/ electron transporter
           AT1G22840 mRNA, complete cds
          Length = 727

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 349 cttcaggtacgcaatgagatcagcacggtcctgtggcttctt 390
           ||||| ||| || ||||||||||||||||| || ||||||||
Sbjct: 418 cttcaagtaggcgatgagatcagcacggtcttgcggcttctt 377
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>gb|AC146549.8| Medicago truncatula clone mth2-7p18, complete sequence
          Length = 96612

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 121   ttttccagcaactgaatcaaaa 142
             ||||||||||||||||||||||
Sbjct: 89901 ttttccagcaactgaatcaaaa 89922
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>gb|AC146709.11| Medicago truncatula clone mth2-90m14, complete sequence
          Length = 110472

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 121   ttttccagcaactgaatcaaaa 142
             ||||||||||||||||||||||
Sbjct: 51396 ttttccagcaactgaatcaaaa 51417



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 121   ttttccagcaactgaatcaaaa 142
             ||||||||||||||||||||||
Sbjct: 36211 ttttccagcaactgaatcaaaa 36232
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>emb|AL357080.13| Human DNA sequence from clone RP11-432L12 on chromosome 6 Contains STSs
             and GSSs, complete sequence
          Length = 172073

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 255   ctattaatgtctaatcttattatttt 280
             |||||||||||||| |||||||||||
Sbjct: 67056 ctattaatgtctaaacttattatttt 67081
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>gb|AY114580.1| Arabidopsis thaliana cytochrome C (At1g22840) mRNA, complete cds
          Length = 475

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 349 cttcaggtacgcaatgagatcagcacggtcctgtggcttctt 390
           ||||| ||| || ||||||||||||||||| || ||||||||
Sbjct: 324 cttcaagtaggcgatgagatcagcacggtcttgcggcttctt 283
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>gb|AY062853.1| Arabidopsis thaliana cytochrome C (At1g22840; F19G10.20) mRNA,
           complete cds
          Length = 619

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 349 cttcaggtacgcaatgagatcagcacggtcctgtggcttctt 390
           ||||| ||| || ||||||||||||||||| || ||||||||
Sbjct: 411 cttcaagtaggcgatgagatcagcacggtcttgcggcttctt 370
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>gb|AY087108.1| Arabidopsis thaliana clone 31770 mRNA, complete sequence
          Length = 627

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 349 cttcaggtacgcaatgagatcagcacggtcctgtggcttctt 390
           ||||| ||| || ||||||||||||||||| || ||||||||
Sbjct: 418 cttcaagtaggcgatgagatcagcacggtcttgcggcttctt 377
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>gb|AF000657.1|ATAF000657 Arabidopsis thaliana BAC F19G10, complete sequence
          Length = 92948

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                       
Query: 349   cttcaggtacgcaatgagatcagcacggtcctgtggcttctt 390
             ||||| ||| || ||||||||||||||||| || ||||||||
Sbjct: 90776 cttcaagtaggcgatgagatcagcacggtcttgcggcttctt 90817
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>gb|AC155340.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone
              KBrH020D15, complete sequence
          Length = 143633

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                        
Query: 349    cttcaggtacgcaatgagatcagcacggtcctgtggcttctt 390
              ||||| ||| || ||||||||||||||||| || ||||||||
Sbjct: 102836 cttcaagtaggcgatgagatcagcacggtcttgaggcttctt 102877
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>emb|CR762438.7| Zebrafish DNA sequence from clone CH211-12O9 in linkage group 1,
            complete sequence
          Length = 16378

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 275  tattttactgcaaaatgaatt 295
            |||||||||||||||||||||
Sbjct: 3001 tattttactgcaaaatgaatt 2981
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>gb|AC148765.24| Medicago truncatula clone mth2-34f9, complete sequence
          Length = 85199

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 139   aaaagattgacgaagatttta 159
             |||||||||||||||||||||
Sbjct: 28730 aaaagattgacgaagatttta 28750
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>gb|AC104126.2| Homo sapiens chromosome 5 clone RP11-526F3, complete sequence
          Length = 187914

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 276   attttactgcaaaatgaattc 296
             |||||||||||||||||||||
Sbjct: 20468 attttactgcaaaatgaattc 20448
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>gb|AC010261.5| Homo sapiens chromosome 5 clone CTC-459M5, complete sequence
          Length = 146017

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 276   attttactgcaaaatgaattc 296
             |||||||||||||||||||||
Sbjct: 26905 attttactgcaaaatgaattc 26925
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>gb|AC124029.15| Mus musculus chromosome 1, clone RP23-238E7, complete sequence
          Length = 204904

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 297   actcgtaatgacatgatcacagcat 321
             |||| ||||||||||||||||||||
Sbjct: 47431 actcataatgacatgatcacagcat 47455
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>emb|CR392343.29| Zebrafish DNA sequence from clone CH211-195G6 in linkage group 22,
              complete sequence
          Length = 194465

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 261    atgtctaatcttattatttta 281
              |||||||||||||||||||||
Sbjct: 176130 atgtctaatcttattatttta 176150
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>gb|AC102045.14| Mus musculus chromosome 1, clone RP23-335P21, complete sequence
          Length = 190825

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 297    actcgtaatgacatgatcacagcat 321
              |||| ||||||||||||||||||||
Sbjct: 143364 actcataatgacatgatcacagcat 143388
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>gb|AY697432.1| Lactobacillus parabuchneri strain 33 glucansucrase gene, complete cds
          Length = 5028

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 94   ctggtggtcaaaacatgcgt 113
            ||||||||||||||||||||
Sbjct: 2252 ctggtggtcaaaacatgcgt 2271
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>gb|AC112682.12| Mus musculus chromosome 6, clone RP23-332K10, complete sequence
          Length = 206903

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 23     aaagctttatatatcaattttaaa 46
              ||||||||||||||||||| ||||
Sbjct: 117919 aaagctttatatatcaattataaa 117896
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>gb|AC107663.10| Mus musculus chromosome 13, clone RP23-99G9, complete sequence
          Length = 213163

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   acacaggcagaaagctttat 32
            ||||||||||||||||||||
Sbjct: 5743 acacaggcagaaagctttat 5724
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>gb|AC129206.3| Mus musculus BAC clone RP24-269P22 from chromosome 8, complete sequence
          Length = 181214

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 370    agcacggtcctgtggcttcttcag 393
              |||| |||||||||||||||||||
Sbjct: 106981 agcagggtcctgtggcttcttcag 106958
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>emb|AL392108.4| Human DNA sequence from clone RP11-551P18 on chromosome 10 Contains the
              5' UTR of a variant of a  novel gene, complete sequence
          Length = 145179

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     tatatatcaattttaaagat 49
              ||||||||||||||||||||
Sbjct: 139425 tatatatcaattttaaagat 139444
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>emb|AL031122.3|HS503N11 Human DNA sequence from clone RP3-503N11 on chromosome 6p24.1-24.3,
             complete sequence
          Length = 94749

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    atatcaattttaaagatctc 52
             ||||||||||||||||||||
Sbjct: 16233 atatcaattttaaagatctc 16252
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>emb|BX927152.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 5/10
          Length = 349799

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     ttttaaagatctcatgttca 59
              ||||||||||||||||||||
Sbjct: 144707 ttttaaagatctcatgttca 144688
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>emb|BX324156.6| Zebrafish DNA sequence from clone CH211-215C3 in linkage group 1,
             complete sequence
          Length = 214471

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 275   tattttactgcaaaatgaat 294
             ||||||||||||||||||||
Sbjct: 39518 tattttactgcaaaatgaat 39537
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>gb|AC024900.20| Homo sapiens 12 BAC RP11-549E9 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 171970

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 184  acccatatcataaaaacgaaattc 207
            ||||||||||||||||| ||||||
Sbjct: 6957 acccatatcataaaaactaaattc 6934
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>ref|XM_691086.1| PREDICTED: Danio rerio similar to Elongation factor Ts,
           mitochondrial precursor (EF-Ts) (EF-TsMt) (2A3-2)
           (LOC567785), mRNA
          Length = 1288

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 9   cataacacaggcagaaagct 28
           ||||||||||||||||||||
Sbjct: 276 cataacacaggcagaaagct 295
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>gb|AC153139.5| Mus musculus BAC clone RP23-411M4 from chromosome 13, complete sequence
          Length = 192541

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    acacaggcagaaagctttat 32
             ||||||||||||||||||||
Sbjct: 73999 acacaggcagaaagctttat 73980
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>dbj|AK049471.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:C430015E13
            product:unclassifiable, full insert sequence
          Length = 2783

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 370  agcacggtcctgtggcttcttcag 393
            |||| |||||||||||||||||||
Sbjct: 1809 agcagggtcctgtggcttcttcag 1832
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>gb|AC007603.5| Homo sapiens chromosome 16 clone RP11-305A4, complete sequence
          Length = 196927

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    ttatatatcaattttaaaga 48
             ||||||||||||||||||||
Sbjct: 37404 ttatatatcaattttaaaga 37385
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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 40      ttttaaagatctcatgttca 59
               ||||||||||||||||||||
Sbjct: 1538932 ttttaaagatctcatgttca 1538913
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>gb|AC175664.2| Mus musculus BAC clone RP24-391A3 from chromosome 8, complete sequence
          Length = 168189

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 272   tattattttactgcaaaatgaatt 295
             ||||||||||||| ||||||||||
Sbjct: 76861 tattattttactggaaaatgaatt 76838
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>emb|AL954339.10| Zebrafish DNA sequence from clone CH211-221J21 in linkage group 12,
             complete sequence
          Length = 203958

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   tattaatgtctaatcttatt 275
             ||||||||||||||||||||
Sbjct: 25289 tattaatgtctaatcttatt 25270
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>emb|BX469897.6| Zebrafish DNA sequence from clone CH211-39F22 in linkage group 4,
              complete sequence
          Length = 186500

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 126    cagcaactgaatcaaaagat 145
              ||||||||||||||||||||
Sbjct: 112675 cagcaactgaatcaaaagat 112656
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>dbj|AB017069.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNJ8
          Length = 88128

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 271   ttattattttactgcaaaat 290
             ||||||||||||||||||||
Sbjct: 50912 ttattattttactgcaaaat 50931
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>dbj|AP000894.6| Homo sapiens genomic DNA, chromosome 18 clone:RP11-672L10, complete
             sequence
          Length = 170522

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    cgccacctggtggtcaaaac 107
             ||||||||||||||||||||
Sbjct: 44317 cgccacctggtggtcaaaac 44336
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>gb|AF017367.1|AF017367 Oryza sativa cytochrome C mRNA, complete cds
          Length = 609

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 349 cttcaggtacgcaatgagatcagcacggtcctgtgg 384
           ||||||||| | ||| ||||||||||| ||||||||
Sbjct: 410 cttcaggtaggaaataagatcagcacgctcctgtgg 375
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>emb|AL731735.14| Mouse DNA sequence from clone RP23-139P21 on chromosome X, complete
             sequence
          Length = 201223

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 276   attttactgcaaaatgaatt 295
             ||||||||||||||||||||
Sbjct: 82766 attttactgcaaaatgaatt 82785


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,240,186
Number of Sequences: 3902068
Number of extensions: 4240186
Number of successful extensions: 82003
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81866
Number of HSP's gapped (non-prelim): 137
length of query: 394
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 372
effective length of database: 17,147,199,772
effective search space: 6378758315184
effective search space used: 6378758315184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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