>gb|DQ110009.1| Lolium perenne MADS10 mRNA, complete cds
          Length = 1149

 Score =  151 bits (76), Expect = 1e-33
 Identities = 119/133 (89%), Gaps = 4/133 (3%)
 Strand = Plus / Minus

                                                                        
Query: 117  aaacagtaaaaacggaaacatcacatcatgcagccacaaggatggtaaatcaggtcaact 176
            ||||||||||||||| |||||||| ||||||||||||||||||| |||||||||| ||||
Sbjct: 1003 aaacagtaaaaacgggaacatcacgtcatgcagccacaaggatgataaatcaggttaact 944

                                                                        
Query: 177  gatctcgcttcagctgcaagtttattgcagccc----aggtttgttcataacacaagagc 232
            |||||||||||||||||||| |||||||||| |    | ||||||  || ||||||||||
Sbjct: 943  gatctcgcttcagctgcaagattattgcagctcgggtacgtttgtcgattacacaagagc 884

                         
Query: 233  ttctccactgatg 245
            |||||||||||||
Sbjct: 883  ttctccactgatg 871

>ref|XM_467915.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1245

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 52/55 (94%)
 Strand = Plus / Minus

                                                                   
Query: 133  aacatcacatcatgcagccacaaggatggtaaatcaggtcaactgatctcgcttc 187
            |||||| ||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 1099 aacatcgcatcatgcagccacaaggatgataaatcaggttaactgatctcgcttc 1045

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 52/55 (94%)
 Strand = Plus / Minus

                                                                       
Query: 133      aacatcacatcatgcagccacaaggatggtaaatcaggtcaactgatctcgcttc 187
                |||||| ||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 32063187 aacatcgcatcatgcagccacaaggatgataaatcaggttaactgatctcgcttc 32063133

>dbj|AB107957.1| Oryza sativa (japonica cultivar-group) RMD1 mRNA for MADS domain
           protein, complete cds
          Length = 1117

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 52/55 (94%)
 Strand = Plus / Minus

                                                                  
Query: 133 aacatcacatcatgcagccacaaggatggtaaatcaggtcaactgatctcgcttc 187
           |||||| ||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 948 aacatcgcatcatgcagccacaaggatgataaatcaggttaactgatctcgcttc 894

>dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1175_B01
          Length = 96191

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 52/55 (94%)
 Strand = Plus / Minus

                                                                    
Query: 133   aacatcacatcatgcagccacaaggatggtaaatcaggtcaactgatctcgcttc 187
             |||||| ||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 83562 aacatcgcatcatgcagccacaaggatgataaatcaggttaactgatctcgcttc 83508

>dbj|AK070121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041N10, full
            insert sequence
          Length = 1245

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 52/55 (94%)
 Strand = Plus / Minus

                                                                   
Query: 133  aacatcacatcatgcagccacaaggatggtaaatcaggtcaactgatctcgcttc 187
            |||||| ||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 1099 aacatcgcatcatgcagccacaaggatgataaatcaggttaactgatctcgcttc 1045

>dbj|AB003322.1| Oryza sativa (japonica cultivar-group) mRNA for MADS box-like
           protein, complete cds, clone:C50086
          Length = 1095

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 52/55 (94%)
 Strand = Plus / Minus

                                                                  
Query: 133 aacatcacatcatgcagccacaaggatggtaaatcaggtcaactgatctcgcttc 187
           |||||| ||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 948 aacatcgcatcatgcagccacaaggatgataaatcaggttaactgatctcgcttc 894

>gb|BT016996.1| Zea mays clone EK07D2309A04.c mRNA sequence
          Length = 1103

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 66/74 (89%)
 Strand = Plus / Minus

                                                                       
Query: 133 aacatcacatcatgcagccacaaggatggtaaatcaggtcaactgatctcgcttcagctg 192
           |||||| ||||||| |||||||||||||  ||||||||| ||||||||||||||| | ||
Sbjct: 983 aacatcgcatcatgaagccacaaggatgacaaatcaggttaactgatctcgcttccgatg 924

                         
Query: 193 caagtttattgcag 206
           |||| |||||||||
Sbjct: 923 caagattattgcag 910

>emb|AJ430633.1|ZMA430633 Zea mays mRNA for putative MADS-domain transcription factor (m19
            gene)
          Length = 1167

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 66/74 (89%)
 Strand = Plus / Minus

                                                                        
Query: 133  aacatcacatcatgcagccacaaggatggtaaatcaggtcaactgatctcgcttcagctg 192
            |||||| ||||||| |||||||||||||  ||||||||| ||||||||||||||| | ||
Sbjct: 1003 aacatcgcatcatgaagccacaaggatgacaaatcaggttaactgatctcgcttccgatg 944

                          
Query: 193  caagtttattgcag 206
            |||| |||||||||
Sbjct: 943  caagattattgcag 930

>gb|AY104901.1| Zea mays PCO106306 mRNA sequence
          Length = 1148

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 66/74 (89%)
 Strand = Plus / Minus

                                                                        
Query: 133  aacatcacatcatgcagccacaaggatggtaaatcaggtcaactgatctcgcttcagctg 192
            |||||| ||||||| |||||||||||||  ||||||||| ||||||||||||||| | ||
Sbjct: 1037 aacatcgcatcatgaagccacaaggatgacaaatcaggttaactgatctcgcttccgatg 978

                          
Query: 193  caagtttattgcag 206
            |||| |||||||||
Sbjct: 977  caagattattgcag 964

>emb|AJ430693.1|ZMA430693 Zea mays mRNA for putative MADS-domain transcription factor (m26
           gene)
          Length = 1072

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                       
Query: 133 aacatcacatcatgcagccacaaggatggtaaatcaggtcaactgatctcgcttcagctg 192
           |||||| ||||||| |||||||||||||  ||||||||| ||| |||||||||||   ||
Sbjct: 880 aacatcgcatcatgaagccacaaggatgacaaatcaggttaaccgatctcgcttccaatg 821

                         
Query: 193 caagtttattgcag 206
           |||| |||||||||
Sbjct: 820 caagattattgcag 807

>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113
          Length = 1841713

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 18    ataccaacaaggtacatacata 39
             ||||||||||||||||||||||
Sbjct: 37968 ataccaacaaggtacatacata 37989

>emb|BX005336.10| Zebrafish DNA sequence from clone DKEY-85K7 in linkage group 7, complete
              sequence
          Length = 233826

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 113    tgccaaacagtaaaaacggaa 133
              |||||||||||||||||||||
Sbjct: 230704 tgccaaacagtaaaaacggaa 230684

>gb|AC165222.4| Cavia porcellus, clone Cavia porcellus-25196157D3, complete sequence
          Length = 43983

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 227   aagagcttctccactgatgct 247
             |||||||||||||||||||||
Sbjct: 17034 aagagcttctccactgatgct 17054

>gb|AC101807.12| Mus musculus chromosome 18, clone RP24-251J22, complete sequence
          Length = 171409

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    gcttcagctgcaagtttatt 202
              ||||||||||||||||||||
Sbjct: 113296 gcttcagctgcaagtttatt 113315

>gb|AC131596.10| Mus musculus chromosome 10, clone RP23-476G10, complete sequence
          Length = 178668

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 116    caaacagtaaaaacggaaacatca 139
              ||||||||||||| ||||||||||
Sbjct: 123513 caaacagtaaaaaaggaaacatca 123536

>emb|AL445928.8| Human DNA sequence from clone RP11-305E17 on chromosome 1, complete
             sequence
          Length = 173580

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    ggtacatacatagcatgaaa 47
             ||||||||||||||||||||
Sbjct: 49337 ggtacatacatagcatgaaa 49356

>emb|AL031781.1|HS51J12 Human DNA sequence from clone RP1-51J12 on chromosome 6q26-27
            Contains the 3' part of the alternatively spliced gene
            for the human orthologs of mouse QKI-7 and QKI-7B (KH
            Domain RNA Binding proteins) and zebrafish ZKQ-1 (Quaking
            protein homolog), complete sequence
          Length = 117813

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 28   ggtacatacatagcatgaaa 47
            ||||||||||||||||||||
Sbjct: 9483 ggtacatacatagcatgaaa 9502

>ref|NM_006775.1| Homo sapiens quaking homolog, KH domain RNA binding (mouse) (QKI),
            transcript variant 1, mRNA
          Length = 4731

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 28   ggtacatacatagcatgaaa 47
            ||||||||||||||||||||
Sbjct: 4285 ggtacatacatagcatgaaa 4266

>ref|XM_945804.1| PREDICTED: Homo sapiens quaking homolog, KH domain RNA binding
            (mouse), transcript variant 7 (QKI), mRNA
          Length = 12064

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 28   ggtacatacatagcatgaaa 47
            ||||||||||||||||||||
Sbjct: 7656 ggtacatacatagcatgaaa 7637

>ref|XM_942223.1| PREDICTED: Homo sapiens quaking homolog, KH domain RNA binding
            (mouse), transcript variant 5 (QKI), mRNA
          Length = 8143

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 28   ggtacatacatagcatgaaa 47
            ||||||||||||||||||||
Sbjct: 3735 ggtacatacatagcatgaaa 3716

>ref|XM_945803.1| PREDICTED: Homo sapiens quaking homolog, KH domain RNA binding
            (mouse), transcript variant 6 (QKI), mRNA
          Length = 12213

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 28   ggtacatacatagcatgaaa 47
            ||||||||||||||||||||
Sbjct: 7805 ggtacatacatagcatgaaa 7786

>dbj|AB067808.2| Homo sapiens gene for RNA binding protein HQK, complete cds
          Length = 12194

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    ggtacatacatagcatgaaa 47
             ||||||||||||||||||||
Sbjct: 11812 ggtacatacatagcatgaaa 11793

>emb|BX322618.8| Zebrafish DNA sequence from clone CH211-265G21 in linkage group 20,
              complete sequence
          Length = 144211

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    gaaacatcacatcatgcagc 150
              ||||||||||||||||||||
Sbjct: 104946 gaaacatcacatcatgcagc 104965

>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence
          Length = 2906179

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 131     gaaacatcacatcatgcagc 150
               ||||||||||||||||||||
Sbjct: 2287867 gaaacatcacatcatgcagc 2287886

>emb|AL591067.35| Mouse DNA sequence from clone RP23-333D2 on chromosome 11, complete
             sequence
          Length = 196512

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 232   cttctccactgatgctgcac 251
             ||||||||||||||||||||
Sbjct: 37172 cttctccactgatgctgcac 37153

>dbj|AB067798.1| Homo sapiens mRNA for RNA binding protein HQK-5, complete cds
          Length = 4664

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 28   ggtacatacatagcatgaaa 47
            ||||||||||||||||||||
Sbjct: 4286 ggtacatacatagcatgaaa 4267


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,403,700
Number of Sequences: 3902068
Number of extensions: 2403700
Number of successful extensions: 43418
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43360
Number of HSP's gapped (non-prelim): 58
length of query: 285
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 263
effective length of database: 17,147,199,772
effective search space: 4509713540036
effective search space used: 4509713540036
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)