ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart11c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CRDL2_HUMAN (Q6WN34) Chordin-like protein 2 precursor (Chordin-r... 31 2.1
2CAP_YEAST (P17555) Adenylyl cyclase-associated protein (CAP) 30 3.5
3SUWA_DROME (P12297) Protein suppressor of white apricot 29 7.8
4VPG_PLRVW (P11625) Putative genome-linked protein precursor (VPG... 29 7.8

>CRDL2_HUMAN (Q6WN34) Chordin-like protein 2 precursor (Chordin-related protein|
           2) (Breast tumor novel factor 1) (BNF-1)
          Length = 429

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 147 QVAASSSTGRKTGP-PPTPHDLTLSPISSFSRLY*PKSSARRTKKYLARKKY 299
           Q   SS  GRK GP  P P  L+ +P+S   R + PK +   T K + ++K+
Sbjct: 198 QDPCSSDAGRKRGPGTPAPTGLS-APLSFIPRHFRPKGAGSTTVKIVLKEKH 248



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>CAP_YEAST (P17555) Adenylyl cyclase-associated protein (CAP)|
          Length = 526

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +3

Query: 111 TERTHTYTRIQQQVAASSSTGRKTGPPPTPHDLTLSPISSFSRLY*PKSSARRTKKYLAR 290
           +++TH    ++Q  +  SSTG K+GPPP P                 K S  +TK+   +
Sbjct: 330 SQQTHKNPELRQS-STVSSTGSKSGPPPRP----------------KKPSTLKTKRPPRK 372

Query: 291 KKYGSRFF 314
           +  G+++F
Sbjct: 373 ELVGNKWF 380



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>SUWA_DROME (P12297) Protein suppressor of white apricot|
          Length = 963

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 397  TRQPCARNHRRPPDHRRLRTPGSRFHPRHLRRQ 495
            +R P  RN  +     R RTP  + H RH RR+
Sbjct: 926  SRSPSCRNAEQRRQQDRRRTPTKKSHKRHKRRR 958



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>VPG_PLRVW (P11625) Putative genome-linked protein precursor (VPG) (17 kDa|
           protein) (ORF 5)
          Length = 156

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 138 IQQQVAASSSTGRKTGPPPTPHDLTLSPISSFSRLY*PKSSARRTKKYL 284
           I+ Q +  SS+ R   PPP P  ++ +PI+     Y P S    + K+L
Sbjct: 102 IRSQASYFSSSARPLPPPPVPSLMSWTPIAK----YHPSSPTSTSSKFL 146


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,652,882
Number of Sequences: 219361
Number of extensions: 1046069
Number of successful extensions: 2542
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2538
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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