>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                    
Query: 309      ggcgcagtagtcgtagatggtgtagccgagctgcac 344
                ||||||||||||||||||||||||||| ||||||||
Sbjct: 13233011 ggcgcagtagtcgtagatggtgtagcccagctgcac 13232976

>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0012F14
          Length = 168629

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                  
Query: 309    ggcgcagtagtcgtagatggtgtagccgagctgcac 344
              ||||||||||||||||||||||||||| ||||||||
Sbjct: 150199 ggcgcagtagtcgtagatggtgtagcccagctgcac 150164

>dbj|AK063497.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-D06, full
            insert sequence
          Length = 1439

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                
Query: 309  ggcgcagtagtcgtagatggtgtagccgagctgcac 344
            ||||||||||||||||||||||||||| ||||||||
Sbjct: 1227 ggcgcagtagtcgtagatggtgtagcccagctgcac 1192

>gb|AC139209.10| Mus musculus chromosome 15, clone RP23-153G2, complete sequence
          Length = 211178

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 115    aacgcaaaagaataaacatat 135
              |||||||||||||||||||||
Sbjct: 190439 aacgcaaaagaataaacatat 190459

>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 371     tggtgagctgggacggctccg 391
               |||||||||||||||||||||
Sbjct: 2138913 tggtgagctgggacggctccg 2138893

>emb|AL935115.6| Zebrafish DNA sequence from clone CH211-199D18, complete sequence
          Length = 187326

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 124    gaataaacatatcaggagatccgag 148
              |||||| ||||||||||||||||||
Sbjct: 146444 gaataagcatatcaggagatccgag 146420

>gb|AY303753.1| Takifugu rubripes erythropoietin (EPO) gene, complete cds,
             alternatively spliced
          Length = 63527

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   gcagtagtcgtagatggtgt 331
             ||||||||||||||||||||
Sbjct: 19750 gcagtagtcgtagatggtgt 19769

>gb|AE009040.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 66 of
            256 of the complete sequence
          Length = 12152

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 416  cggcgcactcggcgtcggcg 435
            ||||||||||||||||||||
Sbjct: 2679 cggcgcactcggcgtcggcg 2698

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 163      acatccaaggaaaccaaatg 182
                ||||||||||||||||||||
Sbjct: 11001306 acatccaaggaaaccaaatg 11001287

>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    gcactcgggcggcacggggc 286
              ||||||||||||||||||||
Sbjct: 280425 gcactcgggcggcacggggc 280444

>emb|AL353715.21| Human DNA sequence from clone CTD-3184A7 on chromosome 20 Contains the
             5' end of the GMEB2 gene for glucocorticoid modulatory
             element binding protein 2, the gene for SCG10-like protein
             (SCLIP) (ortholog of rabbit neuroplasticin-2 (NPC2)), the
             TNFRSF6B gene for member 6 (decoy) of tumor necrosis
             factor receptor superfamily, a novel gene and four CpG
             islands, complete sequence
          Length = 92458

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   aaggaaaccaaatgggagga 188
             ||||||||||||||||||||
Sbjct: 29149 aaggaaaccaaatgggagga 29130

>emb|AL031056.1|HS111D6 Human DNA sequence from clone RP1-111D6 on chromosome 6q24-25.2
             Contains a pseudogene similar to peripheral myelin protein
             2 (M-FABP) (PMP2)(P2, MP2, FABP8) and two novel genes,
             complete sequence
          Length = 128330

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 168   caaggaaaccaaatgggagg 187
             ||||||||||||||||||||
Sbjct: 27065 caaggaaaccaaatgggagg 27084

>gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, complete sequence
          Length = 167588

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 163    acatccaaggaaaccaaatg 182
              ||||||||||||||||||||
Sbjct: 131816 acatccaaggaaaccaaatg 131835

>emb|Y07826.2|TTDNAKOPN T.thermophilus DnaK operon
          Length = 6480

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 354  ctggcgcatctgctccttggtgag 377
            |||||| |||||||||||||||||
Sbjct: 6174 ctggcggatctgctccttggtgag 6151

>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome
          Length = 1931047

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 111     aatcaacgcaaaagaataaacata 134
               |||| |||||||||||||||||||
Sbjct: 1212406 aatcgacgcaaaagaataaacata 1212383

>emb|BX927328.10| Zebrafish DNA sequence from clone CH211-10M4 in linkage group 17,
              complete sequence
          Length = 197949

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    caatcaacgcaaaagaataa 129
              ||||||||||||||||||||
Sbjct: 132665 caatcaacgcaaaagaataa 132646

>emb|BX284692.14| Zebrafish DNA sequence from clone CH211-282O22 in linkage group 17,
              complete sequence
          Length = 162970

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 125    aataaacatatcaggagatccgag 148
              ||||| ||||||||||||||||||
Sbjct: 141774 aataagcatatcaggagatccgag 141797

>emb|BX537142.10| Zebrafish DNA sequence from clone CH211-271D10 in linkage group 16,
              complete sequence
          Length = 176055

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 125    aataaacatatcaggagatccgag 148
              ||||| ||||||||||||||||||
Sbjct: 121477 aataagcatatcaggagatccgag 121500

>emb|BX470262.7| Zebrafish DNA sequence from clone CH211-120K20 in linkage group 14,
             complete sequence
          Length = 164673

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 125   aataaacatatcaggagatccgag 148
             ||||| ||||||||||||||||||
Sbjct: 11772 aataagcatatcaggagatccgag 11749

>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 416    cggcgcactcggcgtcggcg 435
              ||||||||||||||||||||
Sbjct: 716281 cggcgcactcggcgtcggcg 716300

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 388     tccggcgcggtggacgcgttgcagccgg 415
               |||| ||||| |||||||||||||||||
Sbjct: 2795397 tccgccgcgggggacgcgttgcagccgg 2795370

>emb|BX511230.4| Zebrafish DNA sequence from clone DKEY-14H23 in linkage group 17,
             complete sequence
          Length = 156048

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 125   aataaacatatcaggagatccgag 148
             ||||| ||||||||||||||||||
Sbjct: 29557 aataagcatatcaggagatccgag 29580

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 163      acatccaaggaaaccaaatg 182
                ||||||||||||||||||||
Sbjct: 10998069 acatccaaggaaaccaaatg 10998050

>gb|AC093798.3| Homo sapiens BAC clone RP11-306N14 from 2, complete sequence
          Length = 233877

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    gtccttgattttatcatcag 252
              ||||||||||||||||||||
Sbjct: 167626 gtccttgattttatcatcag 167607

>dbj|AB183525.1| Oryza sativa (japonica cultivar-group) PhyB gene for phytochrome B,
            complete cds
          Length = 8636

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 163  acatccaaggaaaccaaatg 182
            ||||||||||||||||||||
Sbjct: 8506 acatccaaggaaaccaaatg 8487

>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 354     ctggcgcatctgctccttggtgag 377
               |||||| |||||||||||||||||
Sbjct: 1413142 ctggcggatctgctccttggtgag 1413165

>gb|AF217796.1|AF217796 Homo sapiens SCG10 like-protein, helicase-like protein NHL, M68, and
             ADP-ribosylation factor related protein 1 (ARFRP1) genes,
             complete cds
          Length = 114793

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   aaggaaaccaaatgggagga 188
             ||||||||||||||||||||
Sbjct: 22344 aaggaaaccaaatgggagga 22325

>emb|CR548625.11| Zebrafish DNA sequence from clone CH211-139E14 in linkage group 19,
             complete sequence
          Length = 195124

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 125   aataaacatatcaggagatccgag 148
             ||||||||||||||| ||||||||
Sbjct: 99783 aataaacatatcaggtgatccgag 99760

>emb|BX649576.15| Zebrafish DNA sequence from clone CH211-153M5 in linkage group 18,
             complete sequence
          Length = 108124

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 125   aataaacatatcaggagatccgag 148
             ||||||||||| ||||||||||||
Sbjct: 89771 aataaacatataaggagatccgag 89794

>dbj|AK063814.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-H04, full
           insert sequence
          Length = 716

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 acatccaaggaaaccaaatg 182
           ||||||||||||||||||||
Sbjct: 712 acatccaaggaaaccaaatg 693

>gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0042B10, from chromosome 3, complete sequence
          Length = 144205

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   acatccaaggaaaccaaatg 182
             ||||||||||||||||||||
Sbjct: 44791 acatccaaggaaaccaaatg 44772

>emb|AL732610.16| Zebrafish DNA sequence from clone CH211-12N8, complete sequence
          Length = 176982

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 125   aataaacatatcaggagatccgag 148
             ||||| ||||||||||||||||||
Sbjct: 19102 aataagcatatcaggagatccgag 19079

>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 354     ctggcgcatctgctccttggtgag 377
               |||||| |||||||||||||||||
Sbjct: 1090137 ctggcggatctgctccttggtgag 1090160

>gb|U36795.1|MXU36795 Myxococcus xanthus rfbABC O-antigen biosynthesis operon, rfbA, rfbB,
            and rfbC genes, complete cds
          Length = 7165

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 297  ttccctggcggaggcgcagt 316
            ||||||||||||||||||||
Sbjct: 2405 ttccctggcggaggcgcagt 2424

>emb|AL929257.9| Mouse DNA sequence from clone RP23-75A23 on chromosome 2, complete
             sequence
          Length = 180619

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   tccaacatccaaggaaacca 178
             ||||||||||||||||||||
Sbjct: 94355 tccaacatccaaggaaacca 94336

>dbj|AB003499.1| Pneumocystis carinii mRNA for subtilisin-like protease 3, partial cds
          Length = 1562

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 302  tggcggaggcgcagtagtcg 321
            ||||||||||||||||||||
Sbjct: 1417 tggcggaggcgcagtagtcg 1398

>dbj|AB012390.1| Thermus thermophilus genes for DnaK, GrpE, DnaJ, DafA, ClpB, complete
            cds
          Length = 6480

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 354  ctggcgcatctgctccttggtgag 377
            |||||| |||||||||||||||||
Sbjct: 6174 ctggcggatctgctccttggtgag 6151

>dbj|AB032368.1| Thermus thermophilus clpB, dafA, dnaJ, grpE, dnaK, ftsH genes,
           complete cds
          Length = 9000

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 354 ctggcgcatctgctccttggtgag 377
           |||||| |||||||||||||||||
Sbjct: 307 ctggcggatctgctccttggtgag 330


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,676,016
Number of Sequences: 3902068
Number of extensions: 3676016
Number of successful extensions: 67791
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67426
Number of HSP's gapped (non-prelim): 365
length of query: 480
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 458
effective length of database: 17,147,199,772
effective search space: 7853417495576
effective search space used: 7853417495576
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)