Clone Name | rbart11b12 |
---|---|
Clone Library Name | barley_pub |
>IRS1_RAT (P35570) Insulin receptor substrate 1 (IRS-1) (pp185)| Length = 1235 Score = 32.3 bits (72), Expect = 0.47 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Frame = +2 Query: 179 PTSSTPDPTDHQNTPE--RRADG---TQKRRALPTRLSAGQPAATRSDEVEEERRGCRHE 343 P SS P H P R+ D T R A PTRLS G P A+ V E+++ + + Sbjct: 820 PESSVTHPHHHALQPHLPRKVDTAAQTNSRLARPTRLSLGDPKASTLPRVREQQQQQQQQ 879 Query: 344 EARGGH 361 + H Sbjct: 880 QQSSLH 885
>CWC25_USTMA (Q4P6I3) Pre-mRNA-splicing factor CWC25| Length = 520 Score = 31.6 bits (70), Expect = 0.80 Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Frame = +2 Query: 203 TDHQNTPERRADGTQKRRALPTRLSAGQPAATRSDEVEEERRGCRHEEARG---GHAATD 373 TD Q+ ERR +KRR R D E RRG RH E+R H+ D Sbjct: 262 TDTQSKDERRRSKEEKRR--------------RHDRDEHRRRGSRHGESRSESRSHSRRD 307 Query: 374 D 376 D Sbjct: 308 D 308
>FA5_BOVIN (Q28107) Coagulation factor V precursor (Activated protein C| cofactor) [Contains: Coagulation factor V heavy chain; Coagulation factor V light chain] Length = 2211 Score = 31.6 bits (70), Expect = 0.80 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 9/54 (16%) Frame = +2 Query: 143 QFNSTTHGQTLAPTSSTPDPTDHQNTPERRADGTQ---------KRRALPTRLS 277 Q + TH T AP++ +PDPT P R+ TQ + RA+PT +S Sbjct: 1122 QDSDPTHSTT-APSNRSPDPTHSTTAPSNRSPPTQPSQIPNYDLRNRAIPTDVS 1174
>DHX33_MOUSE (Q80VY9) Putative ATP-dependent RNA helicase DHX33 (EC 3.6.1.-)| (DEAH box protein 33) Length = 698 Score = 31.2 bits (69), Expect = 1.0 Identities = 16/30 (53%), Positives = 19/30 (63%) Frame = -3 Query: 301 SGGRWLAGGKARRQCPPLLRPVGSPFRRVL 212 +GG AGG RRQ PPL +P SP+R L Sbjct: 30 AGGGGGAGG-GRRQTPPLAQPSASPYREAL 58
>IRS1_MOUSE (P35569) Insulin receptor substrate 1 (IRS-1)| Length = 1233 Score = 30.8 bits (68), Expect = 1.4 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 5/55 (9%) Frame = +2 Query: 179 PTSSTPDPTDHQNTPE--RRADG---TQKRRALPTRLSAGQPAATRSDEVEEERR 328 P SS P H P R+ D T R A PTRLS G P A+ V E+++ Sbjct: 820 PESSLTHPHHHVLQPHLPRKVDTAAQTNSRLARPTRLSLGDPKASTLPRVREQQQ 874
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 30.8 bits (68), Expect = 1.4 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 3/75 (4%) Frame = +2 Query: 152 STTHGQTLAPTSSTPDPTDHQNTPERRADGTQKRRALPTRL---SAGQPAATRSDEVEEE 322 S +HG L P +S+P P P+RRA L L SA QPA + D + Sbjct: 1027 SGSHGSLLLPPASSPPPPPPPPAPQRRATPPLAPGRLSQDLKLISASQPALPQ-DGAQTL 1085 Query: 323 RRGCRHEEARGGHAA 367 RR H + AA Sbjct: 1086 RRASPHSSSGESVAA 1100
>UL49_EHV4 (Q00039) Tegument protein (Gene 11 protein)| Length = 290 Score = 30.4 bits (67), Expect = 1.8 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = +2 Query: 152 STTHGQTLAPTSSTPDPTDHQNTPERRADGTQKRRALPTRLSAGQP 289 ST+HG+ L+PT +TP P TP +R RA + QP Sbjct: 98 STSHGR-LSPTKTTPHPKSAGVTPPQRVPARPATRAAAPSATPTQP 142
>LSD1_HUMAN (O60341) Lysine-specific histone demethylase 1 (EC 1.-.-.-) (Amine| oxidase flavin-containing domain protein 2) (BRAF35-HDAC complex protein BHC110) Length = 852 Score = 30.4 bits (67), Expect = 1.8 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Frame = +2 Query: 164 GQTLAPTSSTPDPTDHQNTPERRADGTQKRRALPTRLSAGQPAATRSDE-VEEERRGCRH 340 G T+ P S+TP T TPE R +KR + R A DE EE R + Sbjct: 86 GPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDESLANLSEDEYYSEEERNAKA 145 Query: 341 EEAR 352 E+ + Sbjct: 146 EKEK 149
>DHX33_HUMAN (Q9H6R0) Putative ATP-dependent RNA helicase DHX33 (EC 3.6.1.-)| (DEAH box protein 33) Length = 707 Score = 30.4 bits (67), Expect = 1.8 Identities = 15/26 (57%), Positives = 17/26 (65%) Frame = -3 Query: 301 SGGRWLAGGKARRQCPPLLRPVGSPF 224 SGGR GG RRQ PPL +P SP+ Sbjct: 40 SGGR--GGGGGRRQQPPLAQPSASPY 63
>YRMC_CAEEL (Q6BEV5) Hypothetical protein R06F6.12| Length = 417 Score = 30.4 bits (67), Expect = 1.8 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%) Frame = +1 Query: 1 ERQHMIICLGTPPLREKEKES-----ARSHLYHHEPHRYKHAPHGGRA 129 E H ++ L PP++EK ++S A S YHH H A R+ Sbjct: 215 ENVHQLVQLALPPIKEKAQDSAYNDQAPSTSYHHHHHEQLEAGKSTRS 262
>P53_FELCA (P41685) Cellular tumor antigen p53 (Tumor suppressor p53)| Length = 386 Score = 30.0 bits (66), Expect = 2.3 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +3 Query: 219 RRKGEPTGRKSGGHCRRAFPPANQRPPDQTK 311 R+KGEP G +RA PP+ P Q K Sbjct: 283 RKKGEPCPEPPPGSTKRALPPSTSSTPPQKK 313
>IE63_HHV1E (P36295) Transcriptional regulator IE63 (VMW63) (ICP27)| Length = 511 Score = 29.6 bits (65), Expect = 3.0 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 12/77 (15%) Frame = +2 Query: 179 PTSSTPDPTDHQ--NTPERRAD------GTQKRRALPT----RLSAGQPAATRSDEVEEE 322 P++ TP PT+ Q N P+ G ++ P +++ QP T++ Sbjct: 81 PSTQTPRPTERQGPNDPQPAPHSVWSRLGARRPSCSPEQHGGKVARLQPPPTKAQPARGG 140 Query: 323 RRGCRHEEARGGHAATD 373 RRG R RGG A D Sbjct: 141 RRGRRRGRGRGGPGAAD 157
>IE63_HHV11 (P10238) Transcriptional regulator IE63 (VMW63) (ICP27)| Length = 512 Score = 29.6 bits (65), Expect = 3.0 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 12/77 (15%) Frame = +2 Query: 179 PTSSTPDPTDHQ--NTPERRAD------GTQKRRALPT----RLSAGQPAATRSDEVEEE 322 P++ TP PT+ Q N P+ G ++ P +++ QP T++ Sbjct: 81 PSTQTPRPTERQGPNDPQPAPHSVWSRLGARRPSCSPEQHGGKVARLQPPPTKAQPARGG 140 Query: 323 RRGCRHEEARGGHAATD 373 RRG R RGG A D Sbjct: 141 RRGRRRGRGRGGPGAAD 157
>LSD1_MOUSE (Q6ZQ88) Lysine-specific histone demethylase 1 (EC 1.-.-.-) (Amine| oxidase flavin-containing domain protein 2) (AOF2 protein) (BRAF35-HDAC complex protein BHC110) Length = 853 Score = 29.6 bits (65), Expect = 3.0 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Frame = +2 Query: 164 GQTLAPTSSTPDPTDHQNTPERRADGTQKRRALPTRLSAGQPAATRSDE-VEEERRGCRH 340 G T P S+TP T TPE R +KR + R A DE EE R + Sbjct: 87 GPTAGPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDESLANLSEDEYYSEEERNAKA 146 Query: 341 EEAR 352 E+ + Sbjct: 147 EKEK 150
>MALK_YERPE (Q8ZAS8) Maltose/maltodextrin import ATP-binding protein malK (EC| 3.6.3.19) Length = 369 Score = 29.6 bits (65), Expect = 3.0 Identities = 19/66 (28%), Positives = 28/66 (42%) Frame = -3 Query: 301 SGGRWLAGGKARRQCPPLLRPVGSPFRRVLMVRWIGSTASRC*GLSMGGTVKLTLLYPRA 122 + G L GGK + PP R +G F+ + + + GL + G VK +Y R Sbjct: 56 TSGELLIGGKRMNEVPPSERGIGMVFQSYALYPHLSVAENMSFGLKLAG-VKKAEIYQRV 114 Query: 121 PHVERV 104 V V Sbjct: 115 NQVAEV 120
>MCH1_NEUCR (Q9P3K8) Probable transporter MCH1| Length = 598 Score = 29.6 bits (65), Expect = 3.0 Identities = 23/74 (31%), Positives = 33/74 (44%) Frame = -3 Query: 256 PPLLRPVGSPFRRVLMVRWIGSTASRC*GLSMGGTVKLTLLYPRAPHVERVCTGAVRGGR 77 PP L+ VG P V +G T++ L G L P+A HV+ +G + R Sbjct: 387 PPHLKFVGEPTSAATHVSIVGITSTLV-RLLTGSLTDLLAPSPQARHVQITSSGTLERKR 445 Query: 76 DVI*RILFLSLVAV 35 + R+ FL AV Sbjct: 446 FSLSRVSFLLFFAV 459
>DEGP9_ARATH (Q9FL12) Protease Do-like 9 (EC 3.4.21.-)| Length = 592 Score = 29.3 bits (64), Expect = 3.9 Identities = 19/79 (24%), Positives = 33/79 (41%) Frame = +2 Query: 122 GARIQQCQFNSTTHGQTLAPTSSTPDPTDHQNTPERRADGTQKRRALPTRLSAGQPAATR 301 G +++ N + Q+ P S++ + +P RR+ G K+R L AG R Sbjct: 23 GGEVKEASANEASLPQSPEPVSAS----EANPSPSRRSRGRGKKRRLNNESEAGN---QR 75 Query: 302 SDEVEEERRGCRHEEARGG 358 + E R H + + G Sbjct: 76 TSSPERSRSRLHHSDTKNG 94
>QCRB_STRLI (Q9ZFB6) Ubiquinol-cytochrome c reductase cytochrome b subunit| Length = 549 Score = 28.9 bits (63), Expect = 5.2 Identities = 23/77 (29%), Positives = 33/77 (42%) Frame = +2 Query: 131 IQQCQFNSTTHGQTLAPTSSTPDPTDHQNTPERRADGTQKRRALPTRLSAGQPAATRSDE 310 I Q Q ++ T + P PT +N ER+ GTQK RA + G+ + Sbjct: 478 ISQEQLHTLTAHEQYKPAEI--GPTVDENGVERKVSGTQKLRAKLSESYYGEESQIPKPT 535 Query: 311 VEEERRGCRHEEARGGH 361 VEE ++E GH Sbjct: 536 VEE------YKEITSGH 546
>BOCT_HUMAN (Q8WUG5) Brain-type organic cation transporter (Solute carrier| family 22 member 17) Length = 538 Score = 28.9 bits (63), Expect = 5.2 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = -1 Query: 363 AWPPRASSWRQPRRSSSTSSDRVAAGWPAERRVGNA 256 A+PP AS W QP +S S A A RV + Sbjct: 19 AFPPNASGWEQPPNASGVSVASAALAASAASRVATS 54
>EX5C_BUCAP (Q8K9B0) Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)| Length = 1061 Score = 28.9 bits (63), Expect = 5.2 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +2 Query: 20 YVSEHHRYERKKKNPLDHI 76 YVSEHH Y+ KK +HI Sbjct: 706 YVSEHHDYKNNKKEIFEHI 724
>COX10_MAGGR (P0C150) Protoheme IX farnesyltransferase, mitochondrial precursor| (EC 2.5.1.-) (Heme O synthase) Length = 552 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Frame = +2 Query: 122 GARIQQCQFNSTTHGQTLAPTSSTPDP-TDHQNTPERRADGTQKRRALPTRLSAGQPA 292 G+ I + N+T + P++STP P D + P RR ++ S+ P+ Sbjct: 104 GSNISNTKRNATVAAADIPPSTSTPRPQVDEELPPHRRRQAARRTAEQAASASSNAPS 161
>CD2L1_MOUSE (P24788) PITSLRE serine/threonine-protein kinase CDC2L1 (EC| 2.7.11.22) (Galactosyltransferase-associated protein kinase p58/GTA) (Cell division cycle 2-like protein kinase 1) Length = 784 Score = 28.5 bits (62), Expect = 6.7 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 8/60 (13%) Frame = +2 Query: 212 QNTPERRADGTQKRRAL--------PTRLSAGQPAATRSDEVEEERRGCRHEEARGGHAA 367 +N+P RR D + R P ++S + A R DE +E+R R A GG A Sbjct: 63 RNSPYRREDSMEDRGEEDDSLAIKPPQQMSRKEKAHHRKDEKRKEKRRHRSHSAEGGKHA 122
>SEPP1_BOVIN (P49907) Selenoprotein P-like protein precursor| Length = 402 Score = 28.5 bits (62), Expect = 6.7 Identities = 23/85 (27%), Positives = 33/85 (38%) Frame = +1 Query: 40 LREKEKESARSHLYHHEPHRYKHAPHGGRADTTMSV*QYHPWTNPSTY*QYSRSNGPSKH 219 L KEK + S +HH PH + H PH HP +P + + + H Sbjct: 191 LATKEKTAEASQRHHH-PHPHSH-PHP----------HPHPHPHPHPHPHHGHQLHENAH 238 Query: 220 AGKASRRDAKAAGIADAPFRRPTSG 294 ++ + D D P PTSG Sbjct: 239 LSESPKPDT-----PDTPENPPTSG 258
>VE2_HPV50 (Q80930) Regulatory protein E2| Length = 396 Score = 28.5 bits (62), Expect = 6.7 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 6/72 (8%) Frame = +2 Query: 149 NSTTHGQTLAPTSSTPDPTDHQNTPERRADGTQKRRALPTRLSAGQPAATRSDEVEEE-- 322 N T H + + S P D Q P D +Q+ R+ +GQP A + E Sbjct: 198 NKTIHSSVTSSSRSAFGPADEQPGPSTSYDKSQQERS-----GSGQPKALQDTEPPTSTS 252 Query: 323 ----RRGCRHEE 346 RRG R E Sbjct: 253 TVRLRRGRRERE 264
>MAFB_RAT (P54842) Transcription factor MafB (V-maf musculoaponeurotic| fibrosarcoma oncogene homolog B) (Transcription factor MAF1) Length = 323 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/59 (28%), Positives = 25/59 (42%) Frame = +1 Query: 61 SARSHLYHHEPHRYKHAPHGGRADTTMSV*QYHPWTNPSTY*QYSRSNGPSKHAGKASR 237 SA H +HH PH PH G ++ + P +P + + S PS A A + Sbjct: 129 SAHHHHHHHHPH-----PHHGYPGAGVTHDELGPHAHPHHHHHHQASPPPSSAASPAQQ 182
>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2424 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = +1 Query: 28 GTPPLREKEKESARSHLYHHEPHRYKHAPH 117 G P RE+E+E R H PH + H H Sbjct: 2197 GDLPSREREQERGRPKDRKHRPHHHHHHHH 2226
>BCAS1_MOUSE (Q80YN3) Breast carcinoma amplified sequence 1 homolog (Novel| amplified in breast cancer 1 homolog) Length = 633 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/43 (39%), Positives = 22/43 (51%) Frame = +2 Query: 158 THGQTLAPTSSTPDPTDHQNTPERRADGTQKRRALPTRLSAGQ 286 T G+T A S +P P + T E R G K +A PT L G+ Sbjct: 379 TRGKTKATKSCSPPPPPSEPTSEGRDSG--KEKAGPTSLPLGK 419
>ABP1_SACEX (P38479) Actin-binding protein| Length = 617 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Frame = +2 Query: 167 QTLAPTSSTPDPTDHQNTPERRADGTQKRR---ALPTRLSAGQPAATRSDEVEEE 322 Q L P ++ P+P + E + ++ +LP+R +A +P + E EEE Sbjct: 473 QPLPPRNTEPEPVEEGEEEEEEEEEEEEEAPAPSLPSRNAAPEPEPEQPQEEEEE 527
>QCRB_STRCO (Q9X806) Ubiquinol-cytochrome c reductase cytochrome b subunit| Length = 545 Score = 28.1 bits (61), Expect = 8.8 Identities = 18/54 (33%), Positives = 25/54 (46%) Frame = +2 Query: 200 PTDHQNTPERRADGTQKRRALPTRLSAGQPAATRSDEVEEERRGCRHEEARGGH 361 PT +N ER+ GTQK RA + G+ + VEE ++E GH Sbjct: 495 PTVDENGVERKVSGTQKLRAKLSESYYGEESQIPKPTVEE------YKEITSGH 542
>YT41_CAEEL (Q11069) Hypothetical protein B0416.1 in chromosome X| Length = 1203 Score = 28.1 bits (61), Expect = 8.8 Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 11/82 (13%) Frame = +2 Query: 164 GQTLAPTSSTPDPTDHQNTPERRADGTQKRRALPTRLSAGQPAAT-----------RSDE 310 G+ P+ + DH E+ +D +LP +LS Q R D+ Sbjct: 874 GRQFVPSLGSVSEVDHSTGEEQSSDSESTTSSLPPKLSLRQRFLVCIGWADPNKYGRHDD 933 Query: 311 VEEERRGCRHEEARGGHAATDD 376 +E E G R E G D Sbjct: 934 IEMEEGGGRLRELSTGSETDSD 955
>DSH_DROME (P51140) Segment polarity protein dishevelled| Length = 623 Score = 28.1 bits (61), Expect = 8.8 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 4/48 (8%) Frame = +1 Query: 82 HHEPHRYKHAPHGGRA----DTTMSV*QYHPWTNPSTY*QYSRSNGPS 213 H PH+ H HGG A DT P NP Y YS + PS Sbjct: 489 HLHPHQLPHG-HGGHALSHADTESITSDIGPLPNPPIYMPYSATYNPS 535
>P53_CANFA (Q29537) Cellular tumor antigen p53 (Tumor suppressor p53)| Length = 381 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = +3 Query: 222 RKGEPTGRKSGGHCRRAFPPANQRPPDQTK 311 +KGEP G +RA PP+ P Q K Sbjct: 279 KKGEPCPEPPPGSTKRALPPSTSSSPPQKK 308
>MAGI1_MOUSE (Q6RHR9) Membrane-associated guanylate kinase, WW and PDZ| domain-containing protein 1 (BAI1-associated protein 1) (BAP-1) (Membrane-associated guanylate kinase inverted 1) (MAGI-1) Length = 1471 Score = 28.1 bits (61), Expect = 8.8 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%) Frame = +2 Query: 206 DHQNTPERRADGTQKRRALPT-RLSAGQPAATRSDEVEEERR----GCRHEEARG 355 D + +PERR G+ +RRA T R A P R +++ R G R E G Sbjct: 1388 DQRRSPERRRGGSPERRAKSTDRRRARSPERRRERSLDKRNRDDKVGHREREEAG 1442
>HUNB_DROSL (O46256) Protein hunchback (Fragments)| Length = 196 Score = 28.1 bits (61), Expect = 8.8 Identities = 11/43 (25%), Positives = 20/43 (46%) Frame = +1 Query: 49 KEKESARSHLYHHEPHRYKHAPHGGRADTTMSV*QYHPWTNPS 177 K++ + H +HH H Y PH +++ S P +P+ Sbjct: 11 KQEPISHHHHHHHAHHSYHQHPHDSNSNSNASSPHQSPLPSPN 53
>BOCT_RAT (Q9P290) Brain-type organic cation transporter (Solute carrier| family 22 member 17) Length = 516 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/33 (45%), Positives = 15/33 (45%) Frame = -1 Query: 363 AWPPRASSWRQPRRSSSTSSDRVAAGWPAERRV 265 A PP AS W QP SS S A A RV Sbjct: 19 ALPPNASGWEQPPNSSGVSVAGAALAASAASRV 51 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,560,137 Number of Sequences: 219361 Number of extensions: 1202257 Number of successful extensions: 4272 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 3932 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4243 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)