Clone Name | rbart11b12 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_511841.1| PREDICTED: Pan troglodytes similar to recoverin (LOC455078), mRNA Length = 1087 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 213 aaaacacgccggaaaggcgagccga 237 ||||||||||||||| ||||||||| Sbjct: 686 aaaacacgccggaaaagcgagccga 710
>ref|NM_002903.2| Homo sapiens recoverin (RCV1), mRNA Length = 1217 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 213 aaaacacgccggaaaggcgagccga 237 ||||||||||||||| ||||||||| Sbjct: 621 aaaacacgccggaaaagcgagccga 645
>gb|BC001720.1| Homo sapiens recoverin, mRNA (cDNA clone MGC:1649 IMAGE:3354566), complete cds Length = 1101 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 213 aaaacacgccggaaaggcgagccga 237 ||||||||||||||| ||||||||| Sbjct: 505 aaaacacgccggaaaagcgagccga 529
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 252 ggcgggcattgccgacgcgcc 272 ||||||||||||||||||||| Sbjct: 1145400 ggcgggcattgccgacgcgcc 1145420
>gb|BT009838.1| Homo sapiens recoverin mRNA, complete cds Length = 603 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 213 aaaacacgccggaaaggcgagccga 237 ||||||||||||||| ||||||||| Sbjct: 434 aaaacacgccggaaaagcgagccga 458
>gb|S62028.1| recoverin [human, retina, mRNA, 1108 nt] Length = 1108 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 213 aaaacacgccggaaaggcgagccga 237 ||||||||||||||| ||||||||| Sbjct: 518 aaaacacgccggaaaagcgagccga 542
>gb|S45545.1| cancer-associated retinopathy antigen [human, mRNA, 1101 nt] Length = 1101 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 213 aaaacacgccggaaaggcgagccga 237 ||||||||||||||| ||||||||| Sbjct: 521 aaaacacgccggaaaagcgagccga 545
>gb|S43855.1| recoverin=photoreceptor protein [human, retina, mRNA, 1190 nt] Length = 1190 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 213 aaaacacgccggaaaggcgagccga 237 ||||||||||||||| ||||||||| Sbjct: 621 aaaacacgccggaaaagcgagccga 645
>gb|AC026591.15| Homo sapiens chromosome 17, clone RP11-655D3, complete sequence Length = 153472 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 213 aaaacacgccggaaaggcgagccga 237 ||||||||||||||| ||||||||| Sbjct: 68932 aaaacacgccggaaaagcgagccga 68956
>gb|AY889431.1| Synthetic construct Homo sapiens clone FLH109935.01X recoverin (RCV1) mRNA, complete cds Length = 603 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 213 aaaacacgccggaaaggcgagccga 237 ||||||||||||||| ||||||||| Sbjct: 434 aaaacacgccggaaaagcgagccga 458
>gb|AC005747.1|AC005747 Homo sapiens chromosome 17, clone hRPK.150_K_15, complete sequence Length = 166701 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 213 aaaacacgccggaaaggcgagccga 237 ||||||||||||||| ||||||||| Sbjct: 16342 aaaacacgccggaaaagcgagccga 16318
>dbj|AB001838.1| Homo sapiens mRNA for recoverin, complete cds Length = 603 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 213 aaaacacgccggaaaggcgagccga 237 ||||||||||||||| ||||||||| Sbjct: 434 aaaacacgccggaaaagcgagccga 458
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 361 cgcggcgaccgacgacggccgcgc 384 ||||||||||||||||| |||||| Sbjct: 369049 cgcggcgaccgacgacgcccgcgc 369026
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 256 ggcattgccgacgcgcctttccgc 279 |||||| ||||||||||||||||| Sbjct: 2900091 ggcattaccgacgcgcctttccgc 2900114
>ref|NM_143178.1| Drosophila melanogaster CG5886-RA (CG5886), mRNA Length = 1888 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 aagtggaggaggagcggcgc 328 |||||||||||||||||||| Sbjct: 420 aagtggaggaggagcggcgc 439
>gb|AC106878.3| Homo sapiens BAC clone RP11-648O9 from 4, complete sequence Length = 135342 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 131 atacaacaatgtcagtttaacagtacca 158 |||||||| ||||||| ||||||||||| Sbjct: 27041 atacaacattgtcagtataacagtacca 27068
>gb|AY047502.1| Drosophila melanogaster GH01188 full length cDNA Length = 1841 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 aagtggaggaggagcggcgc 328 |||||||||||||||||||| Sbjct: 371 aagtggaggaggagcggcgc 390
>gb|AC008209.5|AC008209 Drosophila melanogaster, chromosome 3R, region 96F-96F, BAC clone BACR06K17, complete sequence Length = 169902 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 aagtggaggaggagcggcgc 328 |||||||||||||||||||| Sbjct: 125111 aagtggaggaggagcggcgc 125130
>gb|AC093721.3| Homo sapiens BAC clone CTD-2010B10 from 4, complete sequence Length = 128148 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 aacacatgattatatgtctc 27 |||||||||||||||||||| Sbjct: 56960 aacacatgattatatgtctc 56979
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 tggccacgcggcgaccgacg 374 |||||||||||||||||||| Sbjct: 2058876 tggccacgcggcgaccgacg 2058895
>gb|AE003753.3| Drosophila melanogaster chromosome 3R, section 91 of 118 of the complete sequence Length = 226793 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 aagtggaggaggagcggcgc 328 |||||||||||||||||||| Sbjct: 190896 aagtggaggaggagcggcgc 190915 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,138,033 Number of Sequences: 3902068 Number of extensions: 3138033 Number of successful extensions: 97750 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97546 Number of HSP's gapped (non-prelim): 204 length of query: 420 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 398 effective length of database: 17,147,199,772 effective search space: 6824585509256 effective search space used: 6824585509256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)