ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart11b09 |
|---|---|
| Clone Library Name | barley_pub |
>UXS1_RAT (Q5PQX0) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 50.4 bits (119), Expect = 3e-06 Identities = 23/55 (41%), Positives = 32/55 (58%) Frame = -3 Query: 534 NIGNPGEFTMLELAENVKELINPEVTVTMTENTPDDPRQRKPDITKARRFLTGSP 370 N+GNP E T+LE A+ +K L+ + DDP++RKPDI KA+ L P Sbjct: 322 NLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEP 376
>UXS1_PONPY (Q5R885) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 50.4 bits (119), Expect = 3e-06 Identities = 23/55 (41%), Positives = 32/55 (58%) Frame = -3 Query: 534 NIGNPGEFTMLELAENVKELINPEVTVTMTENTPDDPRQRKPDITKARRFLTGSP 370 N+GNP E T+LE A+ +K L+ + DDP++RKPDI KA+ L P Sbjct: 322 NLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEP 376
>UXS1_MOUSE (Q91XL3) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 50.4 bits (119), Expect = 3e-06 Identities = 23/55 (41%), Positives = 32/55 (58%) Frame = -3 Query: 534 NIGNPGEFTMLELAENVKELINPEVTVTMTENTPDDPRQRKPDITKARRFLTGSP 370 N+GNP E T+LE A+ +K L+ + DDP++RKPDI KA+ L P Sbjct: 322 NLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEP 376
>UXS1_HUMAN (Q8NBZ7) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 50.4 bits (119), Expect = 3e-06 Identities = 23/55 (41%), Positives = 32/55 (58%) Frame = -3 Query: 534 NIGNPGEFTMLELAENVKELINPEVTVTMTENTPDDPRQRKPDITKARRFLTGSP 370 N+GNP E T+LE A+ +K L+ + DDP++RKPDI KA+ L P Sbjct: 322 NLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEP 376
>UXS1_BRARE (Q6GMI9) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UXS-1) Length = 418 Score = 48.5 bits (114), Expect = 1e-05 Identities = 22/55 (40%), Positives = 32/55 (58%) Frame = -3 Query: 534 NIGNPGEFTMLELAENVKELINPEVTVTMTENTPDDPRQRKPDITKARRFLTGSP 370 N+GNP E T+LE A+ +K L+ + DDP++R+PDI KA+ L P Sbjct: 320 NLGNPEEHTILEFAQLIKSLVASRSHIQFLPEAQDDPQRRRPDIRKAKLLLGWEP 374
>UXS1_XENTR (Q6DF08) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UXS-1) Length = 421 Score = 47.0 bits (110), Expect = 3e-05 Identities = 20/55 (36%), Positives = 33/55 (60%) Frame = -3 Query: 534 NIGNPGEFTMLELAENVKELINPEVTVTMTENTPDDPRQRKPDITKARRFLTGSP 370 N+GNP E ++++ A +K+L+ ++ DDP++RKPDI KA+ L P Sbjct: 323 NLGNPQEHSIVQFARLIKQLVGSGGEISFLSEAQDDPQRRKPDIRKAKLLLGWEP 377
>FCL1_ORYSA (Q67WR2) Probable GDP-L-fucose synthase 1 (EC 1.1.1.271)| (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase 1) Length = 328 Score = 30.0 bits (66), Expect(2) = 0.13 Identities = 15/46 (32%), Positives = 26/46 (56%) Frame = -3 Query: 534 NIGNPGEFTMLELAENVKELINPEVTVTMTENTPDDPRQRKPDITK 397 N+G+ E T+ ELAE VKE++ + + + PD ++ D +K Sbjct: 251 NVGSGSEVTIKELAELVKEVVGFQGKLVWDSSKPDGTPRKLMDSSK 296 Score = 23.9 bits (50), Expect(2) = 0.13 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -2 Query: 385 LDWEPKVVLRDGLVLMEDDFRERLAVPKK 299 + W+PKV L++GLV + E + KK Sbjct: 300 MGWKPKVPLKEGLVETYKWYVENVISAKK 328
>GALE_LACHE (Q7WTB1) UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase)| (UDP-galactose 4-epimerase) Length = 330 Score = 34.3 bits (77), Expect = 0.23 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 5/68 (7%) Frame = -3 Query: 534 NIGNPGEFTMLELAENVKELINPEVTVTMTENTPDDPRQRKPDITKARRFLTGSPRSSYV 355 N+G ++ LE+ E+ K++ ++ TM DP D TKAR L P+ V Sbjct: 250 NLGTAHGYSNLEILESAKKVTGIDIPYTMGPRRGGDPDSLVADSTKARTVLGWKPKHENV 309 Query: 354 -----TAW 346 TAW Sbjct: 310 DDVIATAW 317
>FCL2_ORYSA (Q67WR5) Putative GDP-L-fucose synthase 2 (EC 1.1.1.271)| (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase 2) Length = 347 Score = 26.9 bits (58), Expect(2) = 0.28 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = -3 Query: 534 NIGNPGEFTMLELAENVKELINPEVTVTMTENTPDDPRQRKPDITKARR 388 N+G+ E T+ ELAE V+ ++ E V P+ +R D + R+ Sbjct: 267 NVGSGEEVTVRELAEAVRGVVGYEGVVAWDAARPEGVARRVVDSGRMRK 315 Score = 25.8 bits (55), Expect(2) = 0.28 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = -2 Query: 385 LDWEPKVVLRDGL 347 L WEP+V LRDG+ Sbjct: 316 LGWEPRVALRDGI 328
>FCL1_ARATH (O49213) GDP-L-fucose synthase 1 (EC 1.1.1.271)| (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase 1) (AtGER1) (AtFX) Length = 312 Score = 28.1 bits (61), Expect(2) = 0.28 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = -3 Query: 534 NIGNPGEFTMLELAENVKELINPEVTVTMTENTPDDPRQRKPDITK 397 NIG+ E T+ ELAE VKE++ E + PD ++ D +K Sbjct: 237 NIGSGQEVTIRELAELVKEVVGFEGKLGWDCTKPDGTPRKLMDSSK 282 Score = 24.6 bits (52), Expect(2) = 0.28 Identities = 10/13 (76%), Positives = 10/13 (76%) Frame = -2 Query: 385 LDWEPKVVLRDGL 347 L W PKV LRDGL Sbjct: 286 LGWTPKVSLRDGL 298
>FCL2_ARATH (Q9LMU0) Putative GDP-L-fucose synthase 2 (EC 1.1.1.271)| (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase 2) (AtGER2) Length = 328 Score = 27.7 bits (60), Expect(2) = 0.78 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = -3 Query: 534 NIGNPGEFTMLELAENVKELINPEVTVTMTENTPDDPRQRKPDITK 397 N+G+ E T+ ELAE VKE++ + + PD ++ D +K Sbjct: 251 NVGSGVEVTIKELAELVKEVVGFKGKLVWDTTKPDGTPRKLMDSSK 296 Score = 23.5 bits (49), Expect(2) = 0.78 Identities = 10/29 (34%), Positives = 16/29 (55%) Frame = -2 Query: 385 LDWEPKVVLRDGLVLMEDDFRERLAVPKK 299 L W PK+ L+DGL + + E + K+ Sbjct: 300 LGWTPKISLKDGLSQTYEWYLENVVQKKQ 328
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 30.8 bits (68), Expect = 2.5 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = -3 Query: 381 TGSPRSSYVTAWCSWRTTSGSVWQCPRRPRPKATSLR-LAYITNLPEHTHSWVGSSIFV 208 T SP +S+ T CS T SG +WQC P P S++ A+I+ E + G +V Sbjct: 394 TYSPGTSFNTT-CSSCTCSGGLWQCQDLPCPGTCSVQGGAHISTYDEKLYDLHGDCSYV 451
>PKN2_COREF (Q8FUI4) Serine/threonine protein kinases drp72 (EC 2.7.11.1)| Length = 520 Score = 30.4 bits (67), Expect = 3.3 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = +2 Query: 368 LGLPVKNLLAFVMSGFLWRGSSGVFS 445 LGL + ++A V+ G +W G++GVFS Sbjct: 341 LGLLIAAVIAAVIGGIIWAGATGVFS 366
>PLS1_HUMAN (O15162) Phospholipid scramblase 1 (PL scramblase 1)| (Ca(2+)-dependent phospholipid scramblase 1) (Erythrocyte phospholipid scramblase) (MmTRA1b) Length = 318 Score = 29.6 bits (65), Expect = 5.6 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +1 Query: 361 GRPWAPSQEPPCLCDVRLPLARVIRSVLSHRHCHLWVDQLLHVLSKFQ 504 G PW P+ +PP C L I +L H+ +LL VL+ F+ Sbjct: 82 GVPWMPAPQPPLNCPPGLEYLSQIDQILIHQQI-----ELLEVLTGFE 124
>RECO_CHLMU (Q9PJS3) DNA repair protein recO (Recombination protein O)| Length = 234 Score = 29.6 bits (65), Expect = 5.6 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 10/74 (13%) Frame = -3 Query: 399 KARRFLTGSPRSSYVTAWCSWRTTSGS----------VWQCPRRPRPKATSLRLAYITNL 250 K R+ L G ++ + T S+R + WQ +P P+ SL L ++ + Sbjct: 65 KMRKVLQGELKNPFTTIKNSYRLLQSTGKMIQAILKTQWQ--EKPSPQLFSLFLNFLQRI 122 Query: 249 PEHTHSWVGSSIFV 208 PE H + SS+F+ Sbjct: 123 PETPHPYFFSSMFL 136
>PANB_SYNEL (Q8DM44) 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC| 2.1.2.11) (Ketopantoate hydroxymethyltransferase) Length = 265 Score = 28.9 bits (63), Expect = 9.5 Identities = 23/67 (34%), Positives = 35/67 (52%) Frame = +2 Query: 254 LVMYAKRREVALGLGLLGHCQTLPEVVLHEHQAVT*DDLGLPVKNLLAFVMSGFLWRGSS 433 +V A RR V G+ +LGH LP+ V HQ G ++ A +++G L + Sbjct: 127 VVQAATRRLVEAGIPVLGHVGLLPQRV---HQLGGWRQQGNTPQDAAA-ILAGALALAEA 182 Query: 434 GVFSVIV 454 GVF+VI+ Sbjct: 183 GVFAVIL 189
>HDHA_ECOLI (P0AET8) 7-alpha-hydroxysteroid dehydrogenase (EC 1.1.1.159)| (7-alpha-HSDH) Length = 255 Score = 28.9 bits (63), Expect = 9.5 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = -3 Query: 498 LAENVKELINPEVTVTMTENTPDDPRQRKPDITKARRFLTGSPRSSYVT 352 L + +K +I PE+ M ++TP + DI A FL SP +S+V+ Sbjct: 193 LTDALKSVITPEIEQKMLQHTPIRRLGQPQDIANAALFLC-SPAASWVS 240
>HDHA_ECO57 (P0AET9) 7-alpha-hydroxysteroid dehydrogenase (EC 1.1.1.159)| (7-alpha-HSDH) Length = 255 Score = 28.9 bits (63), Expect = 9.5 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = -3 Query: 498 LAENVKELINPEVTVTMTENTPDDPRQRKPDITKARRFLTGSPRSSYVT 352 L + +K +I PE+ M ++TP + DI A FL SP +S+V+ Sbjct: 193 LTDALKSVITPEIEQKMLQHTPIRRLGQPQDIANAALFLC-SPAASWVS 240
>LAR_DROME (P16621) Tyrosine-protein phosphatase Lar precursor (EC 3.1.3.48)| (Protein-tyrosine-phosphate phosphohydrolase) (dLAR) Length = 2029 Score = 28.9 bits (63), Expect = 9.5 Identities = 22/97 (22%), Positives = 33/97 (34%) Frame = -3 Query: 519 GEFTMLELAENVKELINPEVTVTMTENTPDDPRQRKPDITKARRFLTGSPRSSYVTAWCS 340 G TM + + E V N P T + +PR+ V S Sbjct: 371 GIITMYYVVRALSPYTEYEFYVIAVNNIGRGPPSAPATCTTGETKMESAPRNVQVRTLSS 430 Query: 339 WRTTSGSVWQCPRRPRPKATSLRLAYITNLPEHTHSW 229 +T W+ P P + T ++ Y TN + SW Sbjct: 431 --STMVITWEPPETPNGQVTGYKVYYTTNSNQPEASW 465 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,908,173 Number of Sequences: 219361 Number of extensions: 1734151 Number of successful extensions: 4395 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4250 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4394 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
