ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart11b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MYO3_SCHPO (O14157) Myosin type-2 heavy chain 2 (Myosin type II ... 30 1.8
2CTPI_MYCTU (Q10900) Probable cation-transporting ATPase I (EC 3.... 28 5.3

>MYO3_SCHPO (O14157) Myosin type-2 heavy chain 2 (Myosin type II heavy chain 2)|
          Length = 2104

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 69  HPWYDPYTYILPLLRLHVTSEYVRR 143
           HPW++ + ++ PLL    T EY+RR
Sbjct: 816 HPWWNLFLHLKPLLGTTQTDEYLRR 840



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>CTPI_MYCTU (Q10900) Probable cation-transporting ATPase I (EC 3.6.3.-)|
          Length = 1625

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 55   GSAGIILGMIRTPIYYHCYAYT 120
            GSAG+++G+I+TP+  H +  T
Sbjct: 1553 GSAGVLVGIIQTPVISHFFGCT 1574


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,426,390
Number of Sequences: 219361
Number of extensions: 334347
Number of successful extensions: 837
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 80,573,946
effective HSP length: 23
effective length of database: 75,528,643
effective search space used: 1812687432
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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