ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart11b07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF525024.1| Hordeum vulgare subsp. vulgare HGA6 (HGA6) gene, complete cds Length = 2692 Score = 541 bits (273), Expect = e-151 Identities = 310/321 (96%), Gaps = 1/321 (0%) Strand = Plus / Minus Query: 198 agcgcctgctggagcacgccgcggaaccggccgaggtcgagggtgatgttctggccgtcc 257 ||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||| Sbjct: 2690 agcgcctgctggagcacgc-gcggaagcggccgaggtcgattgtgatgttctggccgtcc 2632 Query: 258 atgagcgtccggcgcatgaacccgaaccctttcttatgcagcgacgtcgggtcggtgaag 317 ||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 2631 atgagcgtccgacgcatgaacccgaaccctttcttgtggagcgacgtcgggtcggtgaag 2572 Query: 318 atcttgtgtcccctggggtacttgtccttgagcgagctctcatcgacgccgatctcgtac 377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2571 atcttgtgtcccctggggtacttgtccttgagcgagctctcatcgacgccgatctcgtac 2512 Query: 378 tgcacgtaccggagccccatggcctccgccgggtcgccgtagtccatgcgcgcgatccac 437 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct: 2511 tgcacgtaccggagccccaaggcctccgccgggtcgccgtagtccatgcgcgcgaaccac 2452 Query: 438 tgcaggccgccccacggcaccacctgcaccatggtcgccccgggcgccaggaacatcatg 497 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct: 2451 tgcaggccgccccacggcaccacctgcaccatggtcgccccgggcgcgagggacatcatg 2392 Query: 498 ttggtcagcccggcgccgtgc 518 ||||||||||||||||||||| Sbjct: 2391 ttggtcagcccggcgccgtgc 2371
>ref|XM_549935.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1569 Score = 246 bits (124), Expect = 6e-62 Identities = 238/276 (86%) Strand = Plus / Minus Query: 239 ggtgatgttctggccgtccatgagcgtccggcgcatgaacccgaaccctttcttatgcag 298 |||||||| ||||||||||||||||||| | |||||| |||||||| |||| ||||| Sbjct: 1506 ggtgatgtcctggccgtccatgagcgtctgcttcatgaaggcgaaccctctcttgtgcag 1447 Query: 299 cgacgtcgggtcggtgaagatcttgtgtcccctggggtacttgtccttgagcgagctctc 358 |||||||| ||||||||||| || || ||||||||||||||||||||||||||| Sbjct: 1446 acccgtcgggttggtgaagatctcgtcgccggcggggtacttgtccttgagcgagctctc 1387 Query: 359 atcgacgccgatctcgtactgcacgtaccggagccccatggcctccgccgggtcgccgta 418 ||||| ||||||||||||| | ||| ||||||||| ||| ||||||| |||||||| Sbjct: 1386 ggcgacggcgatctcgtactggatgtagttgagccccatcgccgccgccggctcgccgta 1327 Query: 419 gtccatgcgcgcgatccactgcaggccgccccacggcaccacctgcaccatggtcgcccc 478 ||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| || Sbjct: 1326 gtccatgcgcgcgatccactggaggccgccccatggcaccacctgcaccatcgtcgctcc 1267 Query: 479 gggcgccaggaacatcatgttggtcagcccggcgcc 514 |||| ||||||||||||||| ||||| |||||||| Sbjct: 1266 cggcggcaggaacatcatgttcgtcaggccggcgcc 1231
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 246 bits (124), Expect = 6e-62 Identities = 238/276 (86%) Strand = Plus / Plus Query: 239 ggtgatgttctggccgtccatgagcgtccggcgcatgaacccgaaccctttcttatgcag 298 |||||||| ||||||||||||||||||| | |||||| |||||||| |||| ||||| Sbjct: 1056466 ggtgatgtcctggccgtccatgagcgtctgcttcatgaaggcgaaccctctcttgtgcag 1056525 Query: 299 cgacgtcgggtcggtgaagatcttgtgtcccctggggtacttgtccttgagcgagctctc 358 |||||||| ||||||||||| || || ||||||||||||||||||||||||||| Sbjct: 1056526 acccgtcgggttggtgaagatctcgtcgccggcggggtacttgtccttgagcgagctctc 1056585 Query: 359 atcgacgccgatctcgtactgcacgtaccggagccccatggcctccgccgggtcgccgta 418 ||||| ||||||||||||| | ||| ||||||||| ||| ||||||| |||||||| Sbjct: 1056586 ggcgacggcgatctcgtactggatgtagttgagccccatcgccgccgccggctcgccgta 1056645 Query: 419 gtccatgcgcgcgatccactgcaggccgccccacggcaccacctgcaccatggtcgcccc 478 ||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| || Sbjct: 1056646 gtccatgcgcgcgatccactggaggccgccccatggcaccacctgcaccatcgtcgctcc 1056705 Query: 479 gggcgccaggaacatcatgttggtcagcccggcgcc 514 |||| ||||||||||||||| ||||| |||||||| Sbjct: 1056706 cggcggcaggaacatcatgttcgtcaggccggcgcc 1056741 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 230 gaggtcgagggtgatgttctggccg 254 |||||||||||||| |||||||||| Sbjct: 42128126 gaggtcgagggtgacgttctggccg 42128150 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 230 gaggtcgagggtgatgttctggccg 254 |||||||||||||| |||||||||| Sbjct: 42121086 gaggtcgagggtgacgttctggccg 42121110 Score = 42.1 bits (21), Expect = 1.8 Identities = 42/49 (85%) Strand = Plus / Plus Query: 374 gtactgcacgtaccggagccccatggcctccgccgggtcgccgtagtcc 422 ||||| || |||||||||||||||| || || |||| |||||| ||||| Sbjct: 1077978 gtactccatgtaccggagccccatgtccgccaccggctcgccgaagtcc 1078026
>dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0494A10 Length = 145576 Score = 246 bits (124), Expect = 6e-62 Identities = 238/276 (86%) Strand = Plus / Plus Query: 239 ggtgatgttctggccgtccatgagcgtccggcgcatgaacccgaaccctttcttatgcag 298 |||||||| ||||||||||||||||||| | |||||| |||||||| |||| ||||| Sbjct: 94134 ggtgatgtcctggccgtccatgagcgtctgcttcatgaaggcgaaccctctcttgtgcag 94193 Query: 299 cgacgtcgggtcggtgaagatcttgtgtcccctggggtacttgtccttgagcgagctctc 358 |||||||| ||||||||||| || || ||||||||||||||||||||||||||| Sbjct: 94194 acccgtcgggttggtgaagatctcgtcgccggcggggtacttgtccttgagcgagctctc 94253 Query: 359 atcgacgccgatctcgtactgcacgtaccggagccccatggcctccgccgggtcgccgta 418 ||||| ||||||||||||| | ||| ||||||||| ||| ||||||| |||||||| Sbjct: 94254 ggcgacggcgatctcgtactggatgtagttgagccccatcgccgccgccggctcgccgta 94313 Query: 419 gtccatgcgcgcgatccactgcaggccgccccacggcaccacctgcaccatggtcgcccc 478 ||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| || Sbjct: 94314 gtccatgcgcgcgatccactggaggccgccccatggcaccacctgcaccatcgtcgctcc 94373 Query: 479 gggcgccaggaacatcatgttggtcagcccggcgcc 514 |||| ||||||||||||||| ||||| |||||||| Sbjct: 94374 cggcggcaggaacatcatgttcgtcaggccggcgcc 94409 Score = 42.1 bits (21), Expect = 1.8 Identities = 42/49 (85%) Strand = Plus / Plus Query: 374 gtactgcacgtaccggagccccatggcctccgccgggtcgccgtagtcc 422 ||||| || |||||||||||||||| || || |||| |||||| ||||| Sbjct: 115646 gtactccatgtaccggagccccatgtccgccaccggctcgccgaagtcc 115694
>dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698A04 Length = 141079 Score = 246 bits (124), Expect = 6e-62 Identities = 238/276 (86%) Strand = Plus / Plus Query: 239 ggtgatgttctggccgtccatgagcgtccggcgcatgaacccgaaccctttcttatgcag 298 |||||||| ||||||||||||||||||| | |||||| |||||||| |||| ||||| Sbjct: 25780 ggtgatgtcctggccgtccatgagcgtctgcttcatgaaggcgaaccctctcttgtgcag 25839 Query: 299 cgacgtcgggtcggtgaagatcttgtgtcccctggggtacttgtccttgagcgagctctc 358 |||||||| ||||||||||| || || ||||||||||||||||||||||||||| Sbjct: 25840 acccgtcgggttggtgaagatctcgtcgccggcggggtacttgtccttgagcgagctctc 25899 Query: 359 atcgacgccgatctcgtactgcacgtaccggagccccatggcctccgccgggtcgccgta 418 ||||| ||||||||||||| | ||| ||||||||| ||| ||||||| |||||||| Sbjct: 25900 ggcgacggcgatctcgtactggatgtagttgagccccatcgccgccgccggctcgccgta 25959 Query: 419 gtccatgcgcgcgatccactgcaggccgccccacggcaccacctgcaccatggtcgcccc 478 ||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| || Sbjct: 25960 gtccatgcgcgcgatccactggaggccgccccatggcaccacctgcaccatcgtcgctcc 26019 Query: 479 gggcgccaggaacatcatgttggtcagcccggcgcc 514 |||| ||||||||||||||| ||||| |||||||| Sbjct: 26020 cggcggcaggaacatcatgttcgtcaggccggcgcc 26055 Score = 42.1 bits (21), Expect = 1.8 Identities = 42/49 (85%) Strand = Plus / Plus Query: 374 gtactgcacgtaccggagccccatggcctccgccgggtcgccgtagtcc 422 ||||| || |||||||||||||||| || || |||| |||||| ||||| Sbjct: 47292 gtactccatgtaccggagccccatgtccgccaccggctcgccgaagtcc 47340
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 125 bits (63), Expect = 2e-25 Identities = 201/247 (81%) Strand = Plus / Minus Query: 272 catgaacccgaaccctttcttatgcagcgacgtcgggtcggtgaagatcttgtgtcccct 331 ||||||| |||||| ||||| ||||||| |||||||| |||||| |||| ||| | | Sbjct: 7668275 catgaacgtgaaccccttcttgtgcagcgccgtcgggttggtgaatatctcgtggtctcg 7668216 Query: 332 ggggtacttgtccttgagcgagctctcatcgacgccgatctcgtactgcacgtaccggag 391 ||||||||||||||||||| |||||| || || ||| ||||||||| | ||||| ||| Sbjct: 7668215 cgggtacttgtccttgagcgtgctctcgccggcggcgacctcgtactggatgtacctgag 7668156 Query: 392 ccccatggcctccgccgggtcgccgtagtccatgcgcgcgatccactgcaggccgcccca 451 |||||| ||| ||||||| |||||| ||||| ||||| | |||| | || |||||||| Sbjct: 7668155 ccccatcgccaccgccggctcgccgaagtccgcccgcgccagccaccggagaccgcccca 7668096 Query: 452 cggcaccacctgcaccatggtcgccccgggcgccaggaacatcatgttggtcagcccggc 511 |||||| | ||||||| | || ||||| | |||||||| |||||| ||||||||||| Sbjct: 7668095 cggcacgatctgcaccgccgcggcgccgggtggcaggaacaccatgttcgtcagcccggc 7668036 Query: 512 gccgtgc 518 ||||||| Sbjct: 7668035 gccgtgc 7668029
>dbj|AK109804.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-F10, full insert sequence Length = 1831 Score = 125 bits (63), Expect = 2e-25 Identities = 201/247 (81%) Strand = Plus / Minus Query: 272 catgaacccgaaccctttcttatgcagcgacgtcgggtcggtgaagatcttgtgtcccct 331 ||||||| |||||| ||||| ||||||| |||||||| |||||| |||| ||| | | Sbjct: 1548 catgaacgtgaaccccttcttgtgcagcgccgtcgggttggtgaatatctcgtggtctcg 1489 Query: 332 ggggtacttgtccttgagcgagctctcatcgacgccgatctcgtactgcacgtaccggag 391 ||||||||||||||||||| |||||| || || ||| ||||||||| | ||||| ||| Sbjct: 1488 cgggtacttgtccttgagcgtgctctcgccggcggcgacctcgtactggatgtacctgag 1429 Query: 392 ccccatggcctccgccgggtcgccgtagtccatgcgcgcgatccactgcaggccgcccca 451 |||||| ||| ||||||| |||||| ||||| ||||| | |||| | || |||||||| Sbjct: 1428 ccccatcgccaccgccggctcgccgaagtccgcccgcgccagccaccggagaccgcccca 1369 Query: 452 cggcaccacctgcaccatggtcgccccgggcgccaggaacatcatgttggtcagcccggc 511 |||||| | ||||||| | || ||||| | |||||||| |||||| ||||||||||| Sbjct: 1368 cggcacgatctgcaccgccgcggcgccgggtggcaggaacaccatgttcgtcagcccggc 1309 Query: 512 gccgtgc 518 ||||||| Sbjct: 1308 gccgtgc 1302
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 125 bits (63), Expect = 2e-25 Identities = 201/247 (81%) Strand = Plus / Minus Query: 272 catgaacccgaaccctttcttatgcagcgacgtcgggtcggtgaagatcttgtgtcccct 331 ||||||| |||||| ||||| ||||||| |||||||| |||||| |||| ||| | | Sbjct: 7668156 catgaacgtgaaccccttcttgtgcagcgccgtcgggttggtgaatatctcgtggtctcg 7668097 Query: 332 ggggtacttgtccttgagcgagctctcatcgacgccgatctcgtactgcacgtaccggag 391 ||||||||||||||||||| |||||| || || ||| ||||||||| | ||||| ||| Sbjct: 7668096 cgggtacttgtccttgagcgtgctctcgccggcggcgacctcgtactggatgtacctgag 7668037 Query: 392 ccccatggcctccgccgggtcgccgtagtccatgcgcgcgatccactgcaggccgcccca 451 |||||| ||| ||||||| |||||| ||||| ||||| | |||| | || |||||||| Sbjct: 7668036 ccccatcgccaccgccggctcgccgaagtccgcccgcgccagccaccggagaccgcccca 7667977 Query: 452 cggcaccacctgcaccatggtcgccccgggcgccaggaacatcatgttggtcagcccggc 511 |||||| | ||||||| | || ||||| | |||||||| |||||| ||||||||||| Sbjct: 7667976 cggcacgatctgcaccgccgcggcgccgggtggcaggaacaccatgttcgtcagcccggc 7667917 Query: 512 gccgtgc 518 ||||||| Sbjct: 7667916 gccgtgc 7667910
>emb|AL732646.5|CNS08C9L Oryza sativa chromosome 12, . BAC OSJNBb0001P17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151024 Score = 125 bits (63), Expect = 2e-25 Identities = 201/247 (81%) Strand = Plus / Minus Query: 272 catgaacccgaaccctttcttatgcagcgacgtcgggtcggtgaagatcttgtgtcccct 331 ||||||| |||||| ||||| ||||||| |||||||| |||||| |||| ||| | | Sbjct: 55668 catgaacgtgaaccccttcttgtgcagcgccgtcgggttggtgaatatctcgtggtctcg 55609 Query: 332 ggggtacttgtccttgagcgagctctcatcgacgccgatctcgtactgcacgtaccggag 391 ||||||||||||||||||| |||||| || || ||| ||||||||| | ||||| ||| Sbjct: 55608 cgggtacttgtccttgagcgtgctctcgccggcggcgacctcgtactggatgtacctgag 55549 Query: 392 ccccatggcctccgccgggtcgccgtagtccatgcgcgcgatccactgcaggccgcccca 451 |||||| ||| ||||||| |||||| ||||| ||||| | |||| | || |||||||| Sbjct: 55548 ccccatcgccaccgccggctcgccgaagtccgcccgcgccagccaccggagaccgcccca 55489 Query: 452 cggcaccacctgcaccatggtcgccccgggcgccaggaacatcatgttggtcagcccggc 511 |||||| | ||||||| | || ||||| | |||||||| |||||| ||||||||||| Sbjct: 55488 cggcacgatctgcaccgccgcggcgccgggtggcaggaacaccatgttcgtcagcccggc 55429 Query: 512 gccgtgc 518 ||||||| Sbjct: 55428 gccgtgc 55422
>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence Length = 153766 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/85 (88%), Gaps = 2/85 (2%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa--agtgctttaaacatt 139 |||||||||||||||||||||||| || |||||||| |||||| |||| | |||||| | Sbjct: 6401 tactccctccgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacact 6342 Query: 140 cttatattagtttagggagggagta 164 |||||||||||||| ||||||||| Sbjct: 6341 cttatattagtttacagagggagta 6317 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/85 (85%), Gaps = 2/85 (2%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataacta--aaagtgctttaaacatt 139 ||||||||| |||||||||||||| ||||||||||| |||| |||| | ||||| | Sbjct: 6317 tactccctctgtaaactaatataagagtgtttagatcactactttagtgatctaaacgct 6376 Query: 140 cttatattagtttagggagggagta 164 |||||||||||||| |||||||||| Sbjct: 6377 cttatattagtttacggagggagta 6401
>gb|AF099671.1|AF099671 Secale cereale thaumatin-like protein 2 precursor (TLP2) mRNA, complete cds Length = 975 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/85 (88%), Gaps = 2/85 (2%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa--agtgctttaaacatt 139 ||||||||| ||||||||||||||||| ||||||| |||||| |||| | |||||| | Sbjct: 640 tactccctctgtaaactaatataaaagcatttagatcactaaagtagtgttctaaacact 699 Query: 140 cttatattagtttagggagggagta 164 |||||||||||||| |||||||||| Sbjct: 700 cttatattagtttacggagggagta 724 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataaaagtgtttaga 116 |||||||||||||||||||||||| |||||||||| Sbjct: 724 tactccctccgtaaactaatataagagtgtttaga 690
>gb|AF099670.1|AF099670 Secale cereale thaumatin-like protein 3 precursor (TLP3) gene, complete cds Length = 1003 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/85 (88%), Gaps = 2/85 (2%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa--agtgctttaaacatt 139 ||||||||| ||||||||||||||||| ||||||| |||||| |||| | |||||| | Sbjct: 732 tactccctctgtaaactaatataaaagcatttagatcactaaagtagtgttctaaacact 791 Query: 140 cttatattagtttagggagggagta 164 |||||||||||||| |||||||||| Sbjct: 792 cttatattagtttacggagggagta 816 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataaaagtgtttaga 116 |||||||||||||||||||||||| |||||||||| Sbjct: 816 tactccctccgtaaactaatataagagtgtttaga 782
>gb|AF096927.1|AF096927 Secale cereale thaumatin-like protein 1 precursor (TLP1) mRNA, complete cds Length = 1151 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/85 (88%), Gaps = 2/85 (2%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa--agtgctttaaacatt 139 ||||||||| ||||||||||||||||| ||||||| |||||| |||| | |||||| | Sbjct: 630 tactccctctgtaaactaatataaaagcatttagatcactaaagtagtgttctaaacact 689 Query: 140 cttatattagtttagggagggagta 164 |||||||||||||| |||||||||| Sbjct: 690 cttatattagtttacggagggagta 714 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataaaagtgtttaga 116 |||||||||||||||||||||||| |||||||||| Sbjct: 714 tactccctccgtaaactaatataagagtgtttaga 680
>gb|AF029897.1|AF029897 Triticum aestivum acetyl-coenzyme A carboxylase (Acc-1,1) gene, nuclear gene encoding plastid protein, partial cds Length = 9285 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa--agtgctttaaacatt 139 ||||||||| |||||| ||||||| ||||||||||| |||||| |||| | ||||| | Sbjct: 6466 tactccctctgtaaaccaatataagagtgtttagatcactaaaatagtgttctaaacgct 6407 Query: 140 cttatattagtttagggagggagta 164 |||||||||||||| |||||||||| Sbjct: 6406 cttatattagtttacggagggagta 6382 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 80 actactccctccgtaaactaatataaaagtgtttaga 116 |||||||||||||||||||||||||| || ||||||| Sbjct: 6380 actactccctccgtaaactaatataagagcgtttaga 6416
>emb|AJ302096.1|ASP302096 Aegilops speltoides Pina gene for puroindoline a, cultivar PI 393494 Length = 2570 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/87 (86%), Gaps = 2/87 (2%) Strand = Plus / Minus Query: 80 actactccctccgtaaactaatataaaagtgtttagataactaaa--agtgctttaaaca 137 |||||||||||||||||||||||||| || ||||||| |||||| |||| | ||||| Sbjct: 1475 actactccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaacg 1416 Query: 138 ttcttatattagtttagggagggagta 164 ||||||||||||||| ||||||||| Sbjct: 1415 ctcttatattagtttacagagggagta 1389 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/85 (83%), Gaps = 2/85 (2%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataacta--aaagtgctttaaacatt 139 ||||||||| |||||||||||||| || |||||||| |||| ||| | ||||| | Sbjct: 1389 tactccctctgtaaactaatataagagcgtttagatcactattttagtattctaaacgct 1448 Query: 140 cttatattagtttagggagggagta 164 |||||||||||||| |||||||||| Sbjct: 1449 cttatattagtttacggagggagta 1473
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus region Length = 160897 Score = 69.9 bits (35), Expect = 8e-09 Identities = 74/86 (86%), Gaps = 2/86 (2%) Strand = Plus / Minus Query: 81 ctactccctccgtaaactaatataaaagtgtttagataactaaa--agtgctttaaacat 138 |||||||||| |||||||||||||| |||||||| || |||||| |||| | |||| Sbjct: 150277 ctactccctctgtaaactaatataagagtgtttaaattactaaagtagtgttctaaatgc 150218 Query: 139 tcttatattagtttagggagggagta 164 ||||||||||||||| |||||||||| Sbjct: 150217 tcttatattagtttacggagggagta 150192 Score = 54.0 bits (27), Expect = 5e-04 Identities = 72/86 (83%), Gaps = 2/86 (2%) Strand = Plus / Plus Query: 81 ctactccctccgtaaactaatataaaagtgtttagataacta--aaagtgctttaaacat 138 ||||||||||||||||||||||||| || |||||| |||| ||| |||||||| Sbjct: 150191 ctactccctccgtaaactaatataagagcatttagaacactactttagtaatttaaacac 150250 Query: 139 tcttatattagtttagggagggagta 164 ||||||||||||||| ||||||||| Sbjct: 150251 tcttatattagtttacagagggagta 150276
>dbj|AB178167.1| Triticum aestivum Wcbf2-2 mRNA for AP2/EREBP type transcription factor, complete cds Length = 941 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 81 ctactccctccgtaaactaatataaaagtgtttagataacta 122 ||||||||||||||||||||||||| ||||||||||| |||| Sbjct: 823 ctactccctccgtaaactaatataagagtgtttagatcacta 782 Score = 63.9 bits (32), Expect = 5e-07 Identities = 74/87 (85%), Gaps = 2/87 (2%) Strand = Plus / Plus Query: 80 actactccctccgtaaactaatataaaagtgtttagataactaaaa--gtgctttaaaca 137 ||||||||||| |||||||||||||| || |||| || | ||||| ||| | |||||| Sbjct: 736 actactccctcggtaaactaatataagagcatttaaatcattaaaatagtgatctaaaca 795 Query: 138 ttcttatattagtttagggagggagta 164 ||||||||||||||| |||||||||| Sbjct: 796 ctcttatattagtttacggagggagta 822
>gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC clone 745c13, complete sequence Length = 102842 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/85 (85%), Gaps = 2/85 (2%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa--agtgctttaaacatt 139 ||||||||| |||||||||||||| ||||||||||| |||||| ||| | |||| | Sbjct: 34510 tactccctctgtaaactaatataagagtgtttagattactaaagtagtattctaaatgct 34569 Query: 140 cttatattagtttagggagggagta 164 |||||||||||||| |||||||||| Sbjct: 34570 cttatattagtttacggagggagta 34594 Score = 48.1 bits (24), Expect = 0.029 Identities = 24/24 (100%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataa 105 |||||||||||||||||||||||| Sbjct: 34594 tactccctccgtaaactaatataa 34571
>gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete sequence Length = 285506 Score = 65.9 bits (33), Expect = 1e-07 Identities = 72/84 (85%), Gaps = 2/84 (2%) Strand = Plus / Plus Query: 83 actccctccgtaaactaatataaaagtgtttagataactaaa--agtgctttaaacattc 140 |||||||| |||||||||||||| || |||||||| |||||| |||| | ||||| || Sbjct: 745 actccctcagtaaactaatataagagcgtttagatcactaaaatagtgatcaaaacactc 804 Query: 141 ttatattagtttagggagggagta 164 |||||||| |||| |||||||||| Sbjct: 805 ttatattaatttacggagggagta 828 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataaaagtgtttagataacta 122 ||||||||||||||| |||||||| ||||||| ||| |||| Sbjct: 828 tactccctccgtaaattaatataagagtgttttgatcacta 788
>gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial cds; putative chromosome condensation factor (CCF), putative resistance protein (RGA-2), putative resistance protein (RGA2) and putative nodulin-like-like protein (NLL) gene, complete cds; and retrotransposons Josephine, Angela-2, Angela-4, Heidi, Greti, Angela-3, Fatima, Erika-1, Angela-6, Angela-5, Barbara, Isabelle, Erika-2, and Claudia Length = 211009 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/86 (84%), Gaps = 2/86 (2%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa--agtgctttaaacatt 139 |||||| || |||||||||||||| |||| |||||||| |||| |||| | |||| || Sbjct: 200988 tactccatctgtaaactaatataagagtgcttagataagtaaaatagtgatctaaatgtt 201047 Query: 140 cttatattagtttagggagggagtat 165 ||||||||||||| ||||||||||| Sbjct: 201048 tttatattagtttacggagggagtat 201073 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataaaa 107 |||||||||||||||||||||||||| Sbjct: 201072 tactccctccgtaaactaatataaaa 201047 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataa 105 ||||||||| |||||||||||||| Sbjct: 29740 tactccctctgtaaactaatataa 29763
>gb|AY596544.1| Saccharum officinarum clone SCCCCL3140E04, complete sequence Length = 1525 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Minus Query: 451 acggcaccacctgcaccatggtcgccccgggcgccaggaacatcatgttggtcagcccgg 510 |||||||||||||||||| || |||| || |||||||| ||||||||||||||||| Sbjct: 1317 acggcaccacctgcaccaccacggcgccggccggcaggaacaccatgttggtcagcccgg 1258 Query: 511 cgccgtg 517 ||||||| Sbjct: 1257 cgccgtg 1251
>emb|AJ867402.1| Saccharum officinarum mRNA for glycosyltransferase (a4 gene) Length = 1580 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Minus Query: 451 acggcaccacctgcaccatggtcgccccgggcgccaggaacatcatgttggtcagcccgg 510 |||||||||||||||||| || |||| || |||||||| ||||||||||||||||| Sbjct: 1296 acggcaccacctgcaccaccacggcgccggccggcaggaacaccatgttggtcagcccgg 1237 Query: 511 cgccgtg 517 ||||||| Sbjct: 1236 cgccgtg 1230
>emb|AJ400713.1|TAE400713 Triticum aestivum vp1B gene for VIVIPAROUS1, exons 1-6 Length = 4034 Score = 60.0 bits (30), Expect = 8e-06 Identities = 72/85 (84%), Gaps = 2/85 (2%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaaa--gtgctttaaacatt 139 ||||||||| |||||||||||||| || ||||||| ||||||| || | ||||| | Sbjct: 2795 tactccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacgct 2736 Query: 140 cttatattagtttagggagggagta 164 |||||||||||||| |||||||||| Sbjct: 2735 cttatattagtttacggagggagta 2711 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataacta 122 |||||||||||||||||||||||| || |||||||| |||| Sbjct: 2711 tactccctccgtaaactaatataagagcgtttagattacta 2751
>gb|AY896050.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 531853 MADS box transcription factor (Vrn1) gene, partial cds Length = 1262 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/69 (86%), Gaps = 2/69 (2%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa--agtgctttaaacatt 139 |||||| || ||||||||||||||||| |||||||| |||||| |||| |||||| || Sbjct: 885 tactccatctgtaaactaatataaaagcgtttagattactaaagtagtgttttaaatgtt 944 Query: 140 cttatatta 148 ||||||||| Sbjct: 945 cttatatta 953
>gb|AY896046.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 420911 MADS box transcription factor (Vrn1) gene, partial cds Length = 1262 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/69 (86%), Gaps = 2/69 (2%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa--agtgctttaaacatt 139 |||||| || ||||||||||||||||| |||||||| |||||| |||| |||||| || Sbjct: 885 tactccatctgtaaactaatataaaagcgtttagattactaaagtagtgttttaaatgtt 944 Query: 140 cttatatta 148 ||||||||| Sbjct: 945 cttatatta 953
>gb|AY896045.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 406276 MADS box transcription factor (Vrn1) gene, partial cds Length = 1262 Score = 60.0 bits (30), Expect = 8e-06 Identities = 60/69 (86%), Gaps = 2/69 (2%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa--agtgctttaaacatt 139 |||||| || ||||||||||||||||| |||||||| |||||| |||| |||||| || Sbjct: 885 tactccatctgtaaactaatataaaagcgtttagattactaaagtagtgttttaaatgtt 944 Query: 140 cttatatta 148 ||||||||| Sbjct: 945 cttatatta 953
>emb|AM000057.1| Hordeum vulgare HKT1 gene for high-affinity sodium transporter, exons 1-3 Length = 2155 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 79 tactactccctccgtaaactaatataaaagtgtttagataactaaa 124 |||||||||||| |||||||||||||| || |||||||| |||||| Sbjct: 1341 tactactccctctgtaaactaatataagagcgtttagattactaaa 1296
>emb|X83518.1|HVKNOX3 H.vulgare Knox3 gene Length = 10815 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/72 (86%), Gaps = 2/72 (2%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa--agtgctttaaacatt 139 ||||||||| |||||||||||||| || |||||||| |||||| |||| | ||||| | Sbjct: 7619 tactccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgct 7560 Query: 140 cttatattagtt 151 |||||||||||| Sbjct: 7559 cttatattagtt 7548
>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and SNF2P genes, complete cds; nucellin pseudogene, complete sequence; putative transposase, phosphatidylinositol phosphatidylcholine transfer protein sec14 cytosolic-like protein, and phytochrome P450-like protein genes, complete cds; and unknown genes Length = 438828 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 83 actccctccgtaaactaatataaaagtgtttagat 117 ||||||||||||||||||||||| || |||||||| Sbjct: 177661 actccctccgtaaactaatataagagagtttagat 177695 Score = 48.1 bits (24), Expect = 0.029 Identities = 72/87 (82%), Gaps = 2/87 (2%) Strand = Plus / Minus Query: 79 tactactccctccgtaaactaatataaaagtgtttagataactaaaa--gtgctttaaac 136 ||||| ||||| |||||||||||||| || ||| |||| | ||||| ||| | ||||| Sbjct: 177747 tactattccctttgtaaactaatataagagcgttgagatcattaaaattgtgatctaaac 177688 Query: 137 attcttatattagtttagggagggagt 163 ||||||||||||||| ||||||||| Sbjct: 177687 tctcttatattagtttacggagggagt 177661
>gb|AY553259.1| Hordeum murinum isolate Hor_mur phosphoenolpyruvate carboxylase (pepC) gene, exons 1, 2 and partial cds Length = 1117 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 80 actactccctccgtaaactaatataaaagtgtttagataacta 122 |||||||||||||||||||||||||| || ||||||| |||| Sbjct: 616 actactccctccgtaaactaatataagagcatttagatcacta 574 Score = 46.1 bits (23), Expect = 0.11 Identities = 66/79 (83%), Gaps = 1/79 (1%) Strand = Plus / Plus Query: 87 cctccgtaaactaatataaaagtgtttagataactaaa-agtgctttaaacattcttata 145 |||| ||||||||||||||||| ||||||| | ||| |||| | |||| ||||||| Sbjct: 536 cctctgtaaactaatataaaagcatttagatcattaagtagtgatctaaatgctcttata 595 Query: 146 ttagtttagggagggagta 164 |||||||| |||||||||| Sbjct: 596 ttagtttacggagggagta 614
>emb|AJ867401.1| Sorghum bicolor mRNA for glycosyltransferase (a4 gene) Length = 1476 Score = 54.0 bits (27), Expect = 5e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 451 acggcaccacctgcaccatggtcgccccgggcgccaggaacatcatgttggtcagcccgg 510 |||||||||||||||||| || |||| || |||||||| ||||||||| ||||||| Sbjct: 1192 acggcaccacctgcaccaccacggcgccggccggcaggaacaccatgttggtgagcccgg 1133 Query: 511 cgccgtg 517 ||||||| Sbjct: 1132 cgccgtg 1126
>gb|AF376136.1|AF376136 Triticum aestivum putative CRT/DRE-binding factor (CBF1) mRNA, complete cds Length = 800 Score = 54.0 bits (27), Expect = 5e-04 Identities = 40/43 (93%), Gaps = 1/43 (2%) Strand = Plus / Minus Query: 81 ctactccctccgtaaac-taatataaaagtgtttagataacta 122 ||||||||||||||||| |||||||| ||||||||||| |||| Sbjct: 781 ctactccctccgtaaacttaatataagagtgtttagatcacta 739 Score = 50.1 bits (25), Expect = 0.007 Identities = 74/88 (84%), Gaps = 3/88 (3%) Strand = Plus / Plus Query: 80 actactccctccgtaaactaatataaaagtgtttagataactaaa--agtgctttaaaca 137 ||||||||||| |||||||||||||| || |||| || | |||| |||| | |||||| Sbjct: 693 actactccctcggtaaactaatataagagcatttaaatcattaaaatagtgatctaaaca 752 Query: 138 ttcttatatt-agtttagggagggagta 164 ||||||||| |||||| |||||||||| Sbjct: 753 ctcttatattaagtttacggagggagta 780
>gb|AY896051.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 531957 MADS box transcription factor (Vrn1) gene, partial cds Length = 1262 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa 124 |||||| || ||||||||||||||||| |||||||| |||||| Sbjct: 885 tactccatctgtaaactaatataaaagcgtttagattactaaa 927
>gb|AY896049.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 466460 MADS box transcription factor (Vrn1) gene, partial cds Length = 1262 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa 124 |||||| || ||||||||||||||||| |||||||| |||||| Sbjct: 885 tactccatctgtaaactaatataaaagcgtttagattactaaa 927
>gb|AY896048.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 420916 MADS box transcription factor (Vrn1) gene, partial cds Length = 1261 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa 124 |||||| || ||||||||||||||||| |||||||| |||||| Sbjct: 884 tactccatctgtaaactaatataaaagcgtttagattactaaa 926
>gb|AY896047.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 420913 MADS box transcription factor (Vrn1) gene, partial cds Length = 1261 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa 124 |||||| || ||||||||||||||||| |||||||| |||||| Sbjct: 884 tactccatctgtaaactaatataaaagcgtttagattactaaa 926
>gb|AY896043.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 366446 MADS box transcription factor (Vrn1) gene, partial cds Length = 1260 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa 124 |||||| || ||||||||||||||||| |||||||| |||||| Sbjct: 884 tactccatctgtaaactaatataaaagcgtttagattactaaa 926
>gb|AY896041.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 293409 MADS box transcription factor (Vrn1) gene, partial cds Length = 1259 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa 124 |||||| || ||||||||||||||||| |||||||| |||||| Sbjct: 884 tactccatctgtaaactaatataaaagcgtttagattactaaa 926
>gb|AY104503.1| Zea mays PCO131712 mRNA sequence Length = 612 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 488 gaacatcatgttggtcagcccggcgccgtgc 518 ||||| ||||||||||||||||||||||||| Sbjct: 100 gaacaccatgttggtcagcccggcgccgtgc 70
>gb|AY750993.1| Hordeum vulgare cultivar Strider VRN-H1 gene, complete cds; and transposon MITE-like and retrotransposon Lolaog, complete sequence Length = 17220 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/69 (85%), Gaps = 2/69 (2%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa--agtgctttaaacatt 139 |||||| || ||||| ||||||||||| |||||||| |||||| |||| |||||| || Sbjct: 16690 tactccatctgtaaattaatataaaagcgtttagattactaaagtagtgttttaaatgtt 16749 Query: 140 cttatatta 148 ||||||||| Sbjct: 16750 cttatatta 16758
>gb|AY896052.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 559556 MADS box transcription factor (Vrn1) gene, partial cds Length = 1260 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/69 (85%), Gaps = 2/69 (2%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa--agtgctttaaacatt 139 |||||| || ||||| ||||||||||| |||||||| |||||| |||| |||||| || Sbjct: 883 tactccatctgtaaattaatataaaagcgtttagattactaaagtagtgttttaaatgtt 942 Query: 140 cttatatta 148 ||||||||| Sbjct: 943 cttatatta 951
>gb|AY896042.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 293411 MADS box transcription factor (Vrn1) gene, partial cds Length = 1260 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/69 (85%), Gaps = 2/69 (2%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa--agtgctttaaacatt 139 |||||| || ||||| ||||||||||| |||||||| |||||| |||| |||||| || Sbjct: 883 tactccatctgtaaattaatataaaagcgtttagattactaaagtagtgttttaaatgtt 942 Query: 140 cttatatta 148 ||||||||| Sbjct: 943 cttatatta 951
>gb|AY896040.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 293402 MADS box transcription factor (Vrn1) gene, partial cds Length = 1260 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/69 (85%), Gaps = 2/69 (2%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa--agtgctttaaacatt 139 |||||| || ||||| ||||||||||| |||||||| |||||| |||| |||||| || Sbjct: 883 tactccatctgtaaattaatataaaagcgtttagattactaaagtagtgttttaaatgtt 942 Query: 140 cttatatta 148 ||||||||| Sbjct: 943 cttatatta 951
>gb|AY896036.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 220523 MADS box transcription factor (Vrn1) gene, partial cds Length = 1260 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/69 (85%), Gaps = 2/69 (2%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa--agtgctttaaacatt 139 |||||| || ||||| ||||||||||| |||||||| |||||| |||| |||||| || Sbjct: 883 tactccatctgtaaattaatataaaagcgtttagattactaaagtagtgttttaaatgtt 942 Query: 140 cttatatta 148 ||||||||| Sbjct: 943 cttatatta 951
>gb|AY896035.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 212306 MADS box transcription factor (Vrn1) gene, partial cds Length = 1260 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/69 (85%), Gaps = 2/69 (2%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa--agtgctttaaacatt 139 |||||| || ||||| ||||||||||| |||||||| |||||| |||| |||||| || Sbjct: 883 tactccatctgtaaattaatataaaagcgtttagattactaaagtagtgttttaaatgtt 942 Query: 140 cttatatta 148 ||||||||| Sbjct: 943 cttatatta 951
>ref|XM_465334.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2105 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 486 aggaacatcatgttggtcagcccggcgccgtgc 518 ||||||| ||||||||||||||| ||||||||| Sbjct: 1237 aggaacaccatgttggtcagccctgcgccgtgc 1205
>ref|XM_506798.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1116_E03.25-2 mRNA Length = 2752 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 486 aggaacatcatgttggtcagcccggcgccgtgc 518 ||||||| ||||||||||||||| ||||||||| Sbjct: 1481 aggaacaccatgttggtcagccctgcgccgtgc 1449
>ref|XM_465333.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2103 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 486 aggaacatcatgttggtcagcccggcgccgtgc 518 ||||||| ||||||||||||||| ||||||||| Sbjct: 1487 aggaacaccatgttggtcagccctgcgccgtgc 1455
>ref|NM_197134.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0051D19.6), mRNA Length = 1762 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 486 aggaacatcatgttggtcagcccggcgccgtgc 518 ||||||| ||||||||| ||||||||||||||| Sbjct: 1437 aggaacaccatgttggtgagcccggcgccgtgc 1405
>gb|AY133248.1| Aegilops tauschii starch synthase II gene, complete cds Length = 9024 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataacta 122 ||||||||||||||| |||||||| || |||||||| |||| Sbjct: 2811 tactccctccgtaaattaatataagagcgtttagattacta 2851 Score = 48.1 bits (24), Expect = 0.029 Identities = 72/87 (82%), Gaps = 2/87 (2%) Strand = Plus / Minus Query: 81 ctactccctccgtaaactaatataaaagtgtttagataactaaa--agtgctttaaacat 138 ||||||| || |||||||| ||||| || |||||||| |||||| ||| | ||||| Sbjct: 2896 ctactccgtctgtaaactactataagagcgtttagatcactaaagtagtaatctaaacgc 2837 Query: 139 tcttatattagtttagggagggagtat 165 |||||||||| |||| ||||||||||| Sbjct: 2836 tcttatattaatttacggagggagtat 2810
>gb|AY553258.1| Hordeum marinum isolate Hor_mar phosphoenolpyruvate carboxylase (pepC) gene, exons 1, 2 and partial cds Length = 839 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgttta 114 |||||||| ||||||||||||||||||||||| Sbjct: 489 tactccctttgtaaactaatataaaagtgttta 521
>gb|AY230322.1| Triticum aestivum FCA-A1 (Fca) gene, partial cds Length = 9585 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataaaagtgttta 114 ||||||||||||||| |||||||| |||||||| Sbjct: 9246 tactccctccgtaaattaatataagagtgttta 9214
>gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 genomic sequence, complete sequence Length = 131984 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 486 aggaacatcatgttggtcagcccggcgccgtgc 518 ||||||| ||||||||| ||||||||||||||| Sbjct: 44656 aggaacaccatgttggtgagcccggcgccgtgc 44624
>emb|AJ867403.1| Zea mays mRNA for glycosyltransferase (a4 gene) Length = 1514 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 485 caggaacatcatgttggtcagcccggcgccgtg 517 |||||||| ||||||||| |||||||||||||| Sbjct: 1179 caggaacaccatgttggtgagcccggcgccgtg 1147
>dbj|AB201447.1| Triticum aestivum wSSII-D gene for starch synthase II-D, complete cds Length = 7010 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataacta 122 ||||||||||||||| |||||||| || |||||||| |||| Sbjct: 1567 tactccctccgtaaattaatataagagcgtttagattacta 1607 Score = 48.1 bits (24), Expect = 0.029 Identities = 72/87 (82%), Gaps = 2/87 (2%) Strand = Plus / Minus Query: 81 ctactccctccgtaaactaatataaaagtgtttagataactaaa--agtgctttaaacat 138 ||||||| || |||||||| ||||| || |||||||| |||||| ||| | ||||| Sbjct: 1652 ctactccgtctgtaaactactataagagcgtttagatcactaaagtagtaatctaaacgc 1593 Query: 139 tcttatattagtttagggagggagtat 165 |||||||||| |||| ||||||||||| Sbjct: 1592 tcttatattaatttacggagggagtat 1566
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 486 aggaacatcatgttggtcagcccggcgccgtgc 518 ||||||| ||||||||| ||||||||||||||| Sbjct: 18168472 aggaacaccatgttggtgagcccggcgccgtgc 18168504 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 81 ctactccctccgtaaactaatataaaag 108 |||||||||||||| |||||||||||| Sbjct: 19232209 ctactccctccgtaccctaatataaaag 19232182
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 486 aggaacatcatgttggtcagcccggcgccgtgc 518 ||||||| ||||||||||||||| ||||||||| Sbjct: 13496548 aggaacaccatgttggtcagccctgcgccgtgc 13496516 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ctagctactactccctccgt 93 |||||||||||||||||||| Sbjct: 29302960 ctagctactactccctccgt 29302979 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 ggagcacgccgcggaaccgg 227 |||||||||||||||||||| Sbjct: 22367360 ggagcacgccgcggaaccgg 22367379 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 gctagctactactccctccg 92 |||||||||||||||||||| Sbjct: 11487674 gctagctactactccctccg 11487655
>dbj|AB182943.1| Triticum aestivum Wknox1a gene for KN1 homeobox protein, complete cds Length = 9755 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 81 ctactccctccgtaaactaatataaaagtgtttagat 117 |||||||||||||||| ||||||| ||||||||||| Sbjct: 7968 ctactccctccgtaaagaaatataagagtgtttagat 8004
>dbj|AP005865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0037J12 Length = 118553 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 486 aggaacatcatgttggtcagcccggcgccgtgc 518 ||||||| ||||||||||||||| ||||||||| Sbjct: 11853 aggaacaccatgttggtcagccctgcgccgtgc 11821
>dbj|AP004177.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1116_E03 Length = 126845 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 486 aggaacatcatgttggtcagcccggcgccgtgc 518 ||||||| ||||||||||||||| ||||||||| Sbjct: 82477 aggaacaccatgttggtcagccctgcgccgtgc 82445
>dbj|AK109476.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C03, full insert sequence Length = 2019 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 486 aggaacatcatgttggtcagcccggcgccgtgc 518 ||||||| ||||||||| ||||||||||||||| Sbjct: 1347 aggaacaccatgttggtgagcccggcgccgtgc 1315
>dbj|AK103231.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123E06, full insert sequence Length = 2101 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 486 aggaacatcatgttggtcagcccggcgccgtgc 518 ||||||| ||||||||||||||| ||||||||| Sbjct: 1485 aggaacaccatgttggtcagccctgcgccgtgc 1453
>dbj|AK100151.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023015H06, full insert sequence Length = 2751 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 486 aggaacatcatgttggtcagcccggcgccgtgc 518 ||||||| ||||||||||||||| ||||||||| Sbjct: 1480 aggaacaccatgttggtcagccctgcgccgtgc 1448
>dbj|AK063938.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-D12, full insert sequence Length = 2105 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 486 aggaacatcatgttggtcagcccggcgccgtgc 518 ||||||| ||||||||||||||| ||||||||| Sbjct: 1237 aggaacaccatgttggtcagccctgcgccgtgc 1205
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 486 aggaacatcatgttggtcagcccggcgccgtgc 518 ||||||| ||||||||| ||||||||||||||| Sbjct: 18177725 aggaacaccatgttggtgagcccggcgccgtgc 18177757 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 81 ctactccctccgtaaactaatataaaag 108 |||||||||||||| |||||||||||| Sbjct: 19243485 ctactccctccgtaccctaatataaaag 19243458
>gb|AF488415.1| Triticum monococcum chromosome 7Am BAC 5K14 complete sequence Length = 168746 Score = 48.1 bits (24), Expect = 0.029 Identities = 30/32 (93%) Strand = Plus / Plus Query: 85 tccctccgtaaactaatataaaagtgtttaga 116 ||||||||||||||||||||| || ||||||| Sbjct: 103669 tccctccgtaaactaatataagagcgtttaga 103700 Score = 40.1 bits (20), Expect = 7.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataaaagtgtttagat 117 |||||||| ||||||||||||||||| ||||||| Sbjct: 103750 tactccctttgtaaactaatataaaagcatttagat 103715
>gb|AY896037.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 236388 MADS box transcription factor (Vrn1) gene, partial cds Length = 1259 Score = 48.1 bits (24), Expect = 0.029 Identities = 51/59 (86%), Gaps = 2/59 (3%) Strand = Plus / Plus Query: 92 gtaaactaatataaaagtgtttagataactaaa--agtgctttaaacattcttatatta 148 ||||| ||||||||||| |||||||| |||||| |||| |||||| ||||||||||| Sbjct: 892 gtaaattaatataaaagcgtttagattactaaagtagtgttttaaatgttcttatatta 950
>ref|XM_474788.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1653 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Minus Query: 348 agcgagctctcatcgacgccgatctcgtactgcacgtaccggagccccatg 398 ||||||||||| ||| || |||| ||||||| | |||||||||||||||| Sbjct: 1487 agcgagctctcgtcggcggcgatgtcgtactcgatgtaccggagccccatg 1437 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 497 gttggtcagcccggcgccgtgc 518 |||||||||||||||||||||| Sbjct: 1338 gttggtcagcccggcgccgtgc 1317
>gb|AY758233.1| Hordeum vulgare subsp. vulgare cultivar Morex BM5a gene, complete cds Length = 12080 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa 124 |||||| || ||||||||||||||||| ||||| || |||||| Sbjct: 10709 tactccatctgtaaactaatataaaagcgtttaaattactaaa 10751
>gb|DQ249273.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC 631P8, complete sequence Length = 101158 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa 124 |||||| || ||||||||||||||||| ||||| || |||||| Sbjct: 62430 tactccatctgtaaactaatataaaagcgtttaaattactaaa 62472
>emb|Z66528.1|HVGLTP4X3 H.vulgare ltp4.3 gene Length = 1862 Score = 46.1 bits (23), Expect = 0.11 Identities = 62/74 (83%), Gaps = 2/74 (2%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa--agtgctttaaacatt 139 |||||||||| | || |||||||| || ||||||||||||||| | || | ||||| || Sbjct: 1785 tactccctccatgaagtaatataagagcgtttagataactaaagtaatgatctaaacgtt 1726 Query: 140 cttatattagttta 153 ||||||||||||| Sbjct: 1725 tttatattagttta 1712 Score = 40.1 bits (20), Expect = 7.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagat 117 |||||| || |||||||||||||||| |||||||| Sbjct: 1701 tactccttctgtaaactaatataaaaacgtttagat 1736
>gb|AC110597.7| Homo sapiens chromosome 18, clone CTD-2541J13, complete sequence Length = 180310 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 121 taaaagtgctttaaacattcttatattagtt 151 ||||||| ||||||||||| ||||||||||| Sbjct: 3779 taaaagttctttaaacattattatattagtt 3749
>emb|AL607008.2|OSJN00119 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0026E15, complete sequence Length = 137874 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Plus Query: 348 agcgagctctcatcgacgccgatctcgtactgcacgtaccggagccccatg 398 ||||||||||| ||| || |||| ||||||| | |||||||||||||||| Sbjct: 112534 agcgagctctcgtcggcggcgatgtcgtactcgatgtaccggagccccatg 112584 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 497 gttggtcagcccggcgccgtgc 518 |||||||||||||||||||||| Sbjct: 112683 gttggtcagcccggcgccgtgc 112704
>gb|AC091042.6| Homo sapiens chromosome 18, clone RP11-563H6, complete sequence Length = 149173 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 121 taaaagtgctttaaacattcttatattagtt 151 ||||||| ||||||||||| ||||||||||| Sbjct: 47695 taaaagttctttaaacattattatattagtt 47725
>gb|AY750995.1| Hordeum vulgare subsp. vulgare cultivar Morex VRN-H1 gene, complete cds Length = 12360 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa 124 |||||| || ||||||||||||||||| ||||| || |||||| Sbjct: 11479 tactccatctgtaaactaatataaaagcgtttaaattactaaa 11521
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Plus Query: 348 agcgagctctcatcgacgccgatctcgtactgcacgtaccggagccccatg 398 ||||||||||| ||| || |||| ||||||| | |||||||||||||||| Sbjct: 6558286 agcgagctctcgtcggcggcgatgtcgtactcgatgtaccggagccccatg 6558336 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 497 gttggtcagcccggcgccgtgc 518 |||||||||||||||||||||| Sbjct: 6558435 gttggtcagcccggcgccgtgc 6558456
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Plus Query: 371 ctcgtactgcacgtaccggagccccatggcctccgccgggtcgccgtagtc 421 |||||||| ||||||||||||||||| ||| | |||| ||||||||||| Sbjct: 11683569 ctcgtactcgacgtaccggagccccatcgccggcaccggctcgccgtagtc 11683619 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 73 gctagctactactccctccgt 93 ||||||||||||||||||||| Sbjct: 26001271 gctagctactactccctccgt 26001251 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 446 gccccacggcaccacctgca 465 |||||||||||||||||||| Sbjct: 15751100 gccccacggcaccacctgca 15751119 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 ccctggggtacttgtccttgagcg 351 |||| ||||||||||||||||||| Sbjct: 15385372 cccttgggtacttgtccttgagcg 15385349 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 ctagctactactccctccgt 93 |||||||||||||||||||| Sbjct: 12315391 ctagctactactccctccgt 12315372
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 214 cgccgcggaaccggccgaggtcg 236 ||||||||||||||||||||||| Sbjct: 4208546 cgccgcggaaccggccgaggtcg 4208568 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 gcacgccgcggaaccggccg 230 |||||||||||||||||||| Sbjct: 2535741 gcacgccgcggaaccggccg 2535760
>dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0005N06 Length = 140639 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Plus Query: 371 ctcgtactgcacgtaccggagccccatggcctccgccgggtcgccgtagtc 421 |||||||| ||||||||||||||||| ||| | |||| ||||||||||| Sbjct: 32111 ctcgtactcgacgtaccggagccccatcgccggcaccggctcgccgtagtc 32161
>dbj|AK121999.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110G11, full insert sequence Length = 1768 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Minus Query: 348 agcgagctctcatcgacgccgatctcgtactgcacgtaccggagccccatg 398 ||||||||||| ||| || |||| ||||||| | |||||||||||||||| Sbjct: 1521 agcgagctctcgtcggcggcgatgtcgtactcgatgtaccggagccccatg 1471 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 497 gttggtcagcccggcgccgtgc 518 |||||||||||||||||||||| Sbjct: 1372 gttggtcagcccggcgccgtgc 1351
>emb|AJ296273.1|HVU296273 Hordeum vulgare aba7 gene for stress responsive protein Length = 1841 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtt 112 |||| ||||||||||||||||||| |||||| Sbjct: 604 tacttcctccgtaaactaatataagagtgtt 634
>gb|AY896053.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 560559 MADS box transcription factor (Vrn1) gene, partial cds Length = 1214 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa 124 |||||| || ||||||||||||||||| ||||| || |||||| Sbjct: 837 tactccatctgtaaactaatataaaagcgtttaaattactaaa 879
>gb|AY896044.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 401370 MADS box transcription factor (Vrn1) gene, partial cds Length = 1261 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa 124 |||||| || ||||| ||||||||||| |||||||| |||||| Sbjct: 884 tactccatctgtaaattaatataaaagcgtttagattactaaa 926
>gb|AY896039.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 268242 MADS box transcription factor (Vrn1) gene, partial cds Length = 1261 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa 124 |||||| || ||||||||||||||||| ||||| || |||||| Sbjct: 884 tactccatctgtaaactaatataaaagcgtttaaattactaaa 926
>gb|AY896038.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 254894 MADS box transcription factor (Vrn1) gene, partial cds Length = 1261 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa 124 |||||| || ||||||||||||||||| ||||| || |||||| Sbjct: 884 tactccatctgtaaactaatataaaagcgtttaaattactaaa 926
>gb|DQ295068.1| Secale cereale PKABA1 gene, partial sequence Length = 1082 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaa 124 ||||||||| |||||||||||||| || ||||||| |||||| Sbjct: 1026 tactccctctgtaaactaatataagagcttttagatcactaaa 984 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttaga 116 |||||||||| ||||||||||||| || ||||||| Sbjct: 935 tactccctccttaaactaatataagagcgtttaga 969 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 139 tcttatattagtttagggagggagta 164 ||||||||||||||| |||||||||| Sbjct: 960 tcttatattagtttaaggagggagta 935
>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence Length = 211664 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 497 gttggtcagcccggcgccgtgc 518 |||||||||||||||||||||| Sbjct: 193841 gttggtcagcccggcgccgtgc 193862 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 497 gttggtcagcccggcgccgtgc 518 |||||||||||||||||||||| Sbjct: 184433 gttggtcagcccggcgccgtgc 184454 Score = 42.1 bits (21), Expect = 1.8 Identities = 36/41 (87%) Strand = Plus / Plus Query: 383 gtaccggagccccatggcctccgccgggtcgccgtagtcca 423 |||||||||||||||| || || | ||||||||| |||||| Sbjct: 193727 gtaccggagccccatgtccgccactgggtcgccgaagtcca 193767 Score = 40.1 bits (20), Expect = 7.0 Identities = 39/44 (88%), Gaps = 1/44 (2%) Strand = Plus / Plus Query: 80 actactccctccgtaaa-ctaatataaaagtgtttagataacta 122 ||||||||||||||||| ||| ||| |||||||||||||||| Sbjct: 61039 actactccctccgtaaagaaaatttaagagtgtttagataacta 61082
>emb|AJ867398.1| Triticum aestivum mRNA for glycosyltransferase (a3a gene) Length = 1969 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 497 gttggtcagcccggcgccgtgc 518 |||||||||||||||||||||| Sbjct: 1399 gttggtcagcccggcgccgtgc 1378
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 497 gttggtcagcccggcgccgtgc 518 |||||||||||||||||||||| Sbjct: 2447337 gttggtcagcccggcgccgtgc 2447358 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 213 acgccgcggaaccggccgagg 233 ||||||||||||||||||||| Sbjct: 5303688 acgccgcggaaccggccgagg 5303668
>gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence Length = 184425 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 497 gttggtcagcccggcgccgtgc 518 |||||||||||||||||||||| Sbjct: 145083 gttggtcagcccggcgccgtgc 145104 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 497 gttggtcagcccggcgccgtgc 518 |||||||||||||||||||||| Sbjct: 119719 gttggtcagcccggcgccgtgc 119740 Score = 42.1 bits (21), Expect = 1.8 Identities = 36/41 (87%) Strand = Plus / Plus Query: 383 gtaccggagccccatggcctccgccgggtcgccgtagtcca 423 |||||||||||||||| || || | ||||||||| |||||| Sbjct: 144969 gtaccggagccccatgtccgccacggggtcgccgaagtcca 145009
>gb|M37328.1|WHTRUBIAA T.aestivum ribulose-1,5-bisphosphate carboxylase/oxygenase (RUBISCO) gene, exons 1 and 2 Length = 2205 Score = 44.1 bits (22), Expect = 0.45 Identities = 34/38 (89%) Strand = Plus / Plus Query: 85 tccctccgtaaactaatataaaagtgtttagataacta 122 |||||||||||| ||||||| ||||||||||| |||| Sbjct: 71 tccctccgtaaataaatataagagtgtttagatcacta 108
>ref|NM_184127.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1690 Score = 42.1 bits (21), Expect = 1.8 Identities = 42/49 (85%) Strand = Plus / Minus Query: 374 gtactgcacgtaccggagccccatggcctccgccgggtcgccgtagtcc 422 ||||| || |||||||||||||||| || || |||| |||||| ||||| Sbjct: 1277 gtactccatgtaccggagccccatgtccgccaccggctcgccgaagtcc 1229
>ref|XM_511733.1| PREDICTED: Pan troglodytes similar to hypothetical protein FLJ39421 (LOC454955), mRNA Length = 5684 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 440 caggccgccccacggcaccacctgc 464 ||||||||||||| ||||||||||| Sbjct: 4250 caggccgccccacagcaccacctgc 4226
>ref|XM_463765.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1233 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 230 gaggtcgagggtgatgttctggccg 254 |||||||||||||| |||||||||| Sbjct: 171 gaggtcgagggtgacgttctggccg 147
>ref|XM_463764.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1476 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 230 gaggtcgagggtgatgttctggccg 254 |||||||||||||| |||||||||| Sbjct: 1401 gaggtcgagggtgacgttctggccg 1377
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence Length = 124050 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 85 tccctccgtaaactaatataa 105 ||||||||||||||||||||| Sbjct: 88536 tccctccgtaaactaatataa 88556
>gb|AF347066.1| Triticum aestivum truncated sucrose-phosphate synthase 4 mRNA, partial cds Length = 2642 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 81 ctactccctccgtaaactaatataa 105 |||||||||| |||||||||||||| Sbjct: 1448 ctactccctctgtaaactaatataa 1424
>gb|AC101787.11| Mus musculus chromosome 1, clone RP24-147F6, complete sequence Length = 172617 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 aatataaaagtgtttagataa 119 ||||||||||||||||||||| Sbjct: 26729 aatataaaagtgtttagataa 26709
>gb|AC134449.3| Mus musculus BAC clone RP24-213M16 from chromosome 3, complete sequence Length = 174678 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 tacattcatggtgtgtatatt 53 ||||||||||||||||||||| Sbjct: 147756 tacattcatggtgtgtatatt 147776
>emb|CR626926.1| Aegilops tauschii Length = 94421 Score = 42.1 bits (21), Expect = 1.8 Identities = 36/41 (87%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagataacta 122 |||||||| ||||| ||||||||||| |||||||| |||| Sbjct: 85541 tactccctatgtaaaataatataaaagcgtttagatcacta 85581
>gb|DQ112196.1| Uncultured sulfate-reducing bacterium clone VHS121 dissimilatory sulfite reductase alpha subunit (dsrA) and dissimilatory sulfite reductase bata subunit (dsrB) genes, partial cds Length = 1792 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 494 catgttggtcagcccggcgccgtgc 518 ||||||||||||||||| ||||||| Sbjct: 210 catgttggtcagcccggagccgtgc 186
>emb|AJ867404.1| Triticum aestivum partial mRNA for glycosyltransferase (a4 gene) Length = 1425 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 494 catgttggtcagcccggcgccgtgc 518 ||||||||||||||| ||||||||| Sbjct: 983 catgttggtcagccccgcgccgtgc 959
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 398 ggcctccgccgggtcgccgta 418 ||||||||||||||||||||| Sbjct: 3329720 ggcctccgccgggtcgccgta 3329700
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 73 gctagctactactccctccgt 93 ||||||||||||||||||||| Sbjct: 8319409 gctagctactactccctccgt 8319389 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ctagctactactccctccgt 93 |||||||||||||||||||| Sbjct: 22118932 ctagctactactccctccgt 22118951
>dbj|AP004368.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1139B11 Length = 136548 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 230 gaggtcgagggtgatgttctggccg 254 |||||||||||||| |||||||||| Sbjct: 114931 gaggtcgagggtgacgttctggccg 114955 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 230 gaggtcgagggtgatgttctggccg 254 |||||||||||||| |||||||||| Sbjct: 107891 gaggtcgagggtgacgttctggccg 107915
>dbj|AP004326.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1294_F06 Length = 121088 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 230 gaggtcgagggtgatgttctggccg 254 |||||||||||||| |||||||||| Sbjct: 1324 gaggtcgagggtgacgttctggccg 1348
>gb|AE004643.1| Pseudomonas aeruginosa PAO1, section 204 of 529 of the complete genome Length = 10871 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 tactgcgcgaggtagttgccg 197 ||||||||||||||||||||| Sbjct: 8495 tactgcgcgaggtagttgccg 8515
>dbj|AP004008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1226_A12 Length = 113025 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 73 gctagctactactccctccgt 93 ||||||||||||||||||||| Sbjct: 39129 gctagctactactccctccgt 39109
>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0017B12 Length = 157424 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 73 gctagctactactccctccgt 93 ||||||||||||||||||||| Sbjct: 156369 gctagctactactccctccgt 156349
>dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0682A06 Length = 142023 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 73 gctagctactactccctccgt 93 ||||||||||||||||||||| Sbjct: 59518 gctagctactactccctccgt 59498
>dbj|AK109878.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-C07, full insert sequence Length = 1808 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 230 gaggtcgagggtgatgttctggccg 254 |||||||||||||| |||||||||| Sbjct: 198 gaggtcgagggtgacgttctggccg 222
>dbj|AK106051.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F02, full insert sequence Length = 1866 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 230 gaggtcgagggtgatgttctggccg 254 |||||||||||||| |||||||||| Sbjct: 1476 gaggtcgagggtgacgttctggccg 1452
>dbj|AK105948.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C08, full insert sequence Length = 1791 Score = 42.1 bits (21), Expect = 1.8 Identities = 42/49 (85%) Strand = Plus / Minus Query: 374 gtactgcacgtaccggagccccatggcctccgccgggtcgccgtagtcc 422 ||||| || |||||||||||||||| || || |||| |||||| ||||| Sbjct: 1378 gtactccatgtaccggagccccatgtccgccaccggctcgccgaagtcc 1330
>gb|AC101703.11| Mus musculus chromosome 1, clone RP23-248B15, complete sequence Length = 208984 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 aatataaaagtgtttagataa 119 ||||||||||||||||||||| Sbjct: 201809 aatataaaagtgtttagataa 201789
>dbj|AK071050.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075J12, full insert sequence Length = 1688 Score = 42.1 bits (21), Expect = 1.8 Identities = 42/49 (85%) Strand = Plus / Minus Query: 374 gtactgcacgtaccggagccccatggcctccgccgggtcgccgtagtcc 422 ||||| || |||||||||||||||| || || |||| |||||| ||||| Sbjct: 1275 gtactccatgtaccggagccccatgtccgccaccggctcgccgaagtcc 1227
>dbj|AK068399.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149N20, full insert sequence Length = 1870 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 230 gaggtcgagggtgatgttctggccg 254 |||||||||||||| |||||||||| Sbjct: 1480 gaggtcgagggtgacgttctggccg 1456
>dbj|AP001541.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-683O4, complete sequence Length = 212884 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 52 ttgtatgttgattgattttat 72 ||||||||||||||||||||| Sbjct: 138747 ttgtatgttgattgattttat 138727
>gb|AC169128.2| Mus musculus BAC clone RP23-306C13 from chromosome 13, complete sequence Length = 185965 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 18 atgcatacatgtagatacattcat 41 ||||||||||||| |||||||||| Sbjct: 28864 atgcatacatgtacatacattcat 28887
>ref|XM_475910.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1224 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 ggggtacttgtccttgagcg 351 |||||||||||||||||||| Sbjct: 1134 ggggtacttgtccttgagcg 1115
>gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJNBa0084C09, complete sequence Length = 151269 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 ctttaaacattcttatattagttt 152 |||||||||||| ||||||||||| Sbjct: 134904 ctttaaacattcatatattagttt 134881
>gb|AC154305.2| Mus musculus BAC clone RP24-492C11 from chromosome 14, complete sequence Length = 181910 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 aactaatataaaagtgttta 114 |||||||||||||||||||| Sbjct: 159529 aactaatataaaagtgttta 159548
>gb|AC166357.3| Mus musculus BAC clone RP23-360N1 from chromosome 7, complete sequence Length = 220916 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 tttaaacattcttatattagttta 153 ||||||||||||| |||||||||| Sbjct: 204538 tttaaacattcttctattagttta 204561
>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10, complete sequence Length = 187034 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 ggggtacttgtccttgagcg 351 |||||||||||||||||||| Sbjct: 163157 ggggtacttgtccttgagcg 163176
>gb|AC136998.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0082P17, complete sequence Length = 157539 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 79 tactactccctccgtaaactaatataaa 106 |||||||||||||||| |||||||||| Sbjct: 8216 tactactccctccgtactctaatataaa 8189
>ref|XM_598675.2| PREDICTED: Bos taurus similar to Y48C3A.3 (LOC520433), mRNA Length = 1677 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 gtgtgtatattgtatgttga 62 |||||||||||||||||||| Sbjct: 1620 gtgtgtatattgtatgttga 1639
>gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1268_B08, complete sequence Length = 119500 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 ggggtacttgtccttgagcg 351 |||||||||||||||||||| Sbjct: 13839 ggggtacttgtccttgagcg 13858
>gb|BC004869.2| Homo sapiens chromosome 6 open reading frame 168, mRNA (cDNA clone MGC:10706 IMAGE:3834272), complete cds Length = 2034 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 gtgtgtatattgtatgttga 62 |||||||||||||||||||| Sbjct: 1962 gtgtgtatattgtatgttga 1981
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 cgagggtgatgttctggccg 254 |||||||||||||||||||| Sbjct: 3378933 cgagggtgatgttctggccg 3378914
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 cgagggtgatgttctggccg 254 |||||||||||||||||||| Sbjct: 3462509 cgagggtgatgttctggccg 3462490
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 ctttaaacattcttatattagttt 152 |||||||||||| ||||||||||| Sbjct: 20216820 ctttaaacattcatatattagttt 20216797
>gb|AC134923.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0030I07, complete sequence Length = 122733 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 79 tactactccctccgtaaactaatataaa 106 |||||||||||||||| |||||||||| Sbjct: 60197 tactactccctccgtactctaatataaa 60170
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 gcgcctgctggagcacgccg 218 |||||||||||||||||||| Sbjct: 2183765 gcgcctgctggagcacgccg 2183746
>gb|AY270159.1| Triticum aestivum resistance protein T10rga2-1A gene, complete cds Length = 4768 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataa 105 ||||||||| |||||||||||||| Sbjct: 1189 tactccctctgtaaactaatataa 1166
>gb|AC163721.4| Mus musculus BAC clone RP23-446B19 from chromosome 13, complete sequence Length = 184728 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 18 atgcatacatgtagatacattcat 41 ||||||||||||| |||||||||| Sbjct: 143569 atgcatacatgtacatacattcat 143592
>gb|BC006515.2| Homo sapiens chromosome 6 open reading frame 168, mRNA (cDNA clone IMAGE:2963854), complete cds Length = 965 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 gtgtgtatattgtatgttga 62 |||||||||||||||||||| Sbjct: 892 gtgtgtatattgtatgttga 911
>emb|BX957253.12| Zebrafish DNA sequence from clone DKEY-234L14 in linkage group 7, complete sequence Length = 197310 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 agtgctttaaacattcttat 144 |||||||||||||||||||| Sbjct: 184123 agtgctttaaacattcttat 184142
>emb|AL929302.16| Human DNA sequence from clone RP11-716A19 on chromosome X Contains the 3' end of the CXorf15 gene for chromosome X open reading frame 15, the RBBP7 gene for retinoblastoma binding protein 7, the 5' end of the REPS2 gene for RALBP1 associated Eps domain containing 2, a novel pseudogene and four CpG islands, complete sequence Length = 172614 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 tgctttaaacattcttatat 146 |||||||||||||||||||| Sbjct: 101577 tgctttaaacattcttatat 101596
>emb|AL357522.10| Human DNA sequence from clone RP11-685G11 on chromosome 6 Contains two CpG islands, complete sequence Length = 124506 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 aaattaattggagtatgcat 23 |||||||||||||||||||| Sbjct: 19303 aaattaattggagtatgcat 19322
>emb|AL034371.16|HS273F20 Human DNA sequence from clone RP1-273F20 on chromosome 6q16.1-16.3 Contains the gene for a novel protein and a CpG island, complete sequence Length = 111253 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 gtgtgtatattgtatgttga 62 |||||||||||||||||||| Sbjct: 74063 gtgtgtatattgtatgttga 74082
>gb|AC008679.5| Homo sapiens chromosome 5 clone CTB-53D8, complete sequence Length = 232613 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 tagatacattcatggtgtgt 48 |||||||||||||||||||| Sbjct: 220299 tagatacattcatggtgtgt 220280
>gb|AF458280.1| Triticum urartu isolate Tu11498 rga2 protein (rga2) gene, partial cds Length = 1437 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataa 105 ||||||||| |||||||||||||| Sbjct: 275 tactccctctgtaaactaatataa 252
>gb|AF458279.1| Triticum monococcum isolate Tm896 rga2 protein (rga2) gene, partial cds Length = 1438 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataa 105 ||||||||| |||||||||||||| Sbjct: 276 tactccctctgtaaactaatataa 253
>gb|AF458278.1| Triticum monococcum isolate Tm13010 rga2 protein (rga2) gene, partial cds Length = 1439 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataa 105 ||||||||| |||||||||||||| Sbjct: 275 tactccctctgtaaactaatataa 252
>gb|AF458277.1| Triticum turgidum subsp. dicoccoides isolate Td9803 rga2 protein (rga2) gene, partial cds Length = 1441 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataa 105 ||||||||| |||||||||||||| Sbjct: 278 tactccctctgtaaactaatataa 255
>gb|AF458276.1| Triticum turgidum subsp. dicoccoides isolate Td4467 rga2 protein (rga2) gene, partial cds Length = 1436 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataa 105 ||||||||| |||||||||||||| Sbjct: 275 tactccctctgtaaactaatataa 252
>gb|AF458275.1| Triticum turgidum subsp. durum isolate Langdon rga2 protein (rga2) gene, partial cds Length = 1438 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataa 105 ||||||||| |||||||||||||| Sbjct: 275 tactccctctgtaaactaatataa 252
>gb|AF458273.1| Triticum aestivum isolate ThLr101A rga2 protein (rga2) gene, partial cds Length = 1438 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataa 105 ||||||||| |||||||||||||| Sbjct: 275 tactccctctgtaaactaatataa 252
>gb|AF458272.1| Triticum aestivum isolate Weique rga2 protein (rga2) gene, partial cds Length = 1435 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataa 105 ||||||||| |||||||||||||| Sbjct: 275 tactccctctgtaaactaatataa 252
>gb|AF458271.1| Triticum aestivum isolate Tesia rga2 protein (rga2) gene, partial cds Length = 1438 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataa 105 ||||||||| |||||||||||||| Sbjct: 275 tactccctctgtaaactaatataa 252
>gb|AF458270.1| Triticum aestivum isolate Pavon rga2 protein (rga2) gene, partial cds Length = 1438 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataa 105 ||||||||| |||||||||||||| Sbjct: 275 tactccctctgtaaactaatataa 252
>gb|AF458269.1| Triticum aestivum isolate Opata rga2 protein (rga2) gene, partial cds Length = 1437 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataa 105 ||||||||| |||||||||||||| Sbjct: 275 tactccctctgtaaactaatataa 252
>gb|AF458268.1| Triticum aestivum isolate Nocazari rga2 protein (rga2) gene, partial cds Length = 1437 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataa 105 ||||||||| |||||||||||||| Sbjct: 274 tactccctctgtaaactaatataa 251
>gb|AF458267.1| Triticum aestivum isolate Galvez rga2 protein (rga2) gene, partial cds Length = 1436 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataa 105 ||||||||| |||||||||||||| Sbjct: 274 tactccctctgtaaactaatataa 251
>gb|AF458266.1| Triticum aestivum isolate Esmer rga2 protein (rga2) gene, partial cds Length = 1437 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataa 105 ||||||||| |||||||||||||| Sbjct: 275 tactccctctgtaaactaatataa 252
>dbj|AK096480.1| Homo sapiens cDNA FLJ39161 fis, clone OCBBF2002357 Length = 2964 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 gtgtgtatattgtatgttga 62 |||||||||||||||||||| Sbjct: 1724 gtgtgtatattgtatgttga 1743
>gb|AE011822.1| Xanthomonas axonopodis pv. citri str. 306, section 200 of 469 of the complete genome Length = 12675 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 gcgcctgctggagcacgccg 218 |||||||||||||||||||| Sbjct: 9088 gcgcctgctggagcacgccg 9069
>gb|AF319619.1| Mycobacterium phage Ms6 gp1, gp2 (lysA), gp3 (lysB), gp4 (hol), gp5, and gp6 (rep) genes, complete cds Length = 6173 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 tctcgtactgcacgtaccgg 389 |||||||||||||||||||| Sbjct: 4378 tctcgtactgcacgtaccgg 4359
>gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 genomic sequence, complete sequence Length = 152172 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 81 ctactccctccgtaaactaatataaaag 108 |||||||||||||| |||||||||||| Sbjct: 144172 ctactccctccgtaccctaatataaaag 144199
>gb|AC006959.1| Homo sapiens chromosome 5, RP1-117N3 (LBNL h74), complete sequence Length = 100987 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 tagatacattcatggtgtgt 48 |||||||||||||||||||| Sbjct: 64255 tagatacattcatggtgtgt 64236
>ref|NM_032511.1| Homo sapiens chromosome 6 open reading frame 168 (C6orf168), mRNA Length = 2034 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 gtgtgtatattgtatgttga 62 |||||||||||||||||||| Sbjct: 1962 gtgtgtatattgtatgttga 1981
>gb|AC022820.11| Homo sapiens chromosome 8, clone RP11-46G17, complete sequence Length = 180899 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 aaaagtgctttaaacattct 141 |||||||||||||||||||| Sbjct: 158117 aaaagtgctttaaacattct 158136
>emb|BX255915.13| Zebrafish DNA sequence from clone CH211-245L1 in linkage group 5, complete sequence Length = 157382 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 taatataaaagtgtttagat 117 |||||||||||||||||||| Sbjct: 55662 taatataaaagtgtttagat 55681
>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence Length = 190469 Score = 40.1 bits (20), Expect = 7.0 Identities = 38/44 (86%) Strand = Plus / Minus Query: 82 tactccctccgtaaactaatataaaagtgtttagataactaaaa 125 |||||||| | ||||||||||||||| |||||| |||||||| Sbjct: 89631 tactcccttcttaaactaatataaaaacatttagaaaactaaaa 89588 Score = 40.1 bits (20), Expect = 7.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataaaagtgtttagat 117 |||||| || |||||||||||||| ||| ||||||| Sbjct: 89547 tactccttctgtaaactaatataacagtatttagat 89582
>gb|AC087366.5| Homo sapiens chromosome 8, clone RP11-621J21, complete sequence Length = 160454 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 aaaagtgctttaaacattct 141 |||||||||||||||||||| Sbjct: 87844 aaaagtgctttaaacattct 87825
>gb|AY129330.1| Mycobacteriopahge Che8, complete sequence Length = 59471 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 tctcgtactgcacgtaccgg 389 |||||||||||||||||||| Sbjct: 29971 tctcgtactgcacgtaccgg 29952
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 ggtgatgttctggccgtcca 258 |||||||||||||||||||| Sbjct: 3510176 ggtgatgttctggccgtcca 3510195
>gb|AF480496.1| Oryza sativa clone BAC 49D11, complete sequence Length = 158050 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 ctagctactactccctccgt 93 |||||||||||||||||||| Sbjct: 59671 ctagctactactccctccgt 59652
>gb|AC084404.8|AC084404 Oryza sativa chromosome 3 BAC OSJNBa0026A15 genomic sequence, complete sequence Length = 156929 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 ctttaaacattcttatattagttt 152 |||||||||||| ||||||||||| Sbjct: 12127 ctttaaacattcatatattagttt 12104
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 79 tactactccctccgtaaactaatataaa 106 |||||||||||||||| |||||||||| Sbjct: 26597939 tactactccctccgtactctaatataaa 26597912
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 ggggtacttgtccttgagcg 351 |||||||||||||||||||| Sbjct: 28378915 ggggtacttgtccttgagcg 28378934
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 ctttaaacattcttatattagttt 152 |||||||||||| ||||||||||| Sbjct: 20209847 ctttaaacattcatatattagttt 20209824
>dbj|AB060249.1| Macaca fascicularis brain cDNA clone:QtrA-10359, similar to human hypothetical protein C6orf168, mRNA, NM_032511.1 Length = 1478 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 gtgtgtatattgtatgttga 62 |||||||||||||||||||| Sbjct: 1398 gtgtgtatattgtatgttga 1417
>gb|AC084632.1|CBRG45F18 Caenorhabditis briggsae cosmid G45F18, complete sequence Length = 30741 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 atgagcgtccggcgcatgaa 277 |||||||||||||||||||| Sbjct: 28445 atgagcgtccggcgcatgaa 28464
>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence Length = 108608 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataa 105 |||| ||||||||||||||||||| Sbjct: 73050 tacttcctccgtaaactaatataa 73073
>emb|BX005381.7| Zebrafish DNA sequence from clone CH211-55H24, complete sequence Length = 45026 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 taaactaatataaaagtgtt 112 |||||||||||||||||||| Sbjct: 23543 taaactaatataaaagtgtt 23524
>dbj|AP006161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1267B06 Length = 156989 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 ggagcacgccgcggaaccgg 227 |||||||||||||||||||| Sbjct: 126004 ggagcacgccgcggaaccgg 126023
>dbj|AP003999.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1115_A05 Length = 113326 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 ggagcacgccgcggaaccgg 227 |||||||||||||||||||| Sbjct: 23579 ggagcacgccgcggaaccgg 23598
>dbj|AP005534.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0030M21 Length = 155970 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 gctagctactactccctccg 92 |||||||||||||||||||| Sbjct: 70166 gctagctactactccctccg 70147
>gb|AY663391.1| Triticum turgidum cultivar Langdon clone BAC 1156G16, complete sequence Length = 187012 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 tactccctccgtaaactaatataa 105 ||||||||| |||||||||||||| Sbjct: 47495 tactccctctgtaaactaatataa 47518
>dbj|AP003511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0578B12 Length = 151192 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 ctagctactactccctccgt 93 |||||||||||||||||||| Sbjct: 31851 ctagctactactccctccgt 31832
>dbj|AP003520.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0021H10 Length = 142659 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 446 gccccacggcaccacctgca 465 |||||||||||||||||||| Sbjct: 86738 gccccacggcaccacctgca 86757
>dbj|AP003545.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0613F06 Length = 184289 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 ccctggggtacttgtccttgagcg 351 |||| ||||||||||||||||||| Sbjct: 52887 cccttgggtacttgtccttgagcg 52864
>emb|BX004832.9| Zebrafish DNA sequence from clone CH211-89M19, complete sequence Length = 190952 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 taaactaatataaaagtgtt 112 |||||||||||||||||||| Sbjct: 188497 taaactaatataaaagtgtt 188478
>dbj|AB117722.1| Rhodococcus rhodochrous bphC4, orf41, orf42, orf43 genes for 2, 3-dihydroxybiphenyl 1, 2-dioxygenase and hypothetical proteins, complete and partial cds Length = 3712 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 ggaaccggccgaggtcgagg 239 |||||||||||||||||||| Sbjct: 3315 ggaaccggccgaggtcgagg 3296
>emb|AL671536.8| Mouse DNA sequence from clone RP23-291O10 on chromosome X, complete sequence Length = 221255 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 acattcatggtgtgtatatt 53 |||||||||||||||||||| Sbjct: 53124 acattcatggtgtgtatatt 53105
>dbj|AP003871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1117_F10 Length = 169948 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ctagctactactccctccgt 93 |||||||||||||||||||| Sbjct: 81895 ctagctactactccctccgt 81914
>dbj|AP005844.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0060O16 Length = 164373 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ctagctactactccctccgt 93 |||||||||||||||||||| Sbjct: 100305 ctagctactactccctccgt 100324
>dbj|AK057793.1| Homo sapiens cDNA FLJ25064 fis, clone CBL04883 Length = 1433 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 gtgtgtatattgtatgttga 62 |||||||||||||||||||| Sbjct: 1379 gtgtgtatattgtatgttga 1398
>dbj|AK108467.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-E02, full insert sequence Length = 1121 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 ggagcacgccgcggaaccgg 227 |||||||||||||||||||| Sbjct: 220 ggagcacgccgcggaaccgg 201
>dbj|AK106699.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-E01, full insert sequence Length = 1526 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 ggggtacttgtccttgagcg 351 |||||||||||||||||||| Sbjct: 1218 ggggtacttgtccttgagcg 1199
>dbj|AK102441.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093L19, full insert sequence Length = 2076 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 gccccacggcaccacctgca 465 |||||||||||||||||||| Sbjct: 1452 gccccacggcaccacctgca 1433
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 464 caccatggtcgccccgggcg 483 |||||||||||||||||||| Sbjct: 1897398 caccatggtcgccccgggcg 1897417
>gb|BC011583.1| Homo sapiens chromosome 6 open reading frame 168, mRNA (cDNA clone MGC:20396 IMAGE:4577456), complete cds Length = 2034 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 gtgtgtatattgtatgttga 62 |||||||||||||||||||| Sbjct: 1962 gtgtgtatattgtatgttga 1981
>gb|AY106252.1| Zea mays PCO094239 mRNA sequence Length = 457 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 ccctggggtacttgtccttgagcg 351 |||| ||||||||||||||||||| Sbjct: 416 cccttgggtacttgtccttgagcg 393
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 gcgcctgctggagcacgccg 218 |||||||||||||||||||| Sbjct: 1164841 gcgcctgctggagcacgccg 1164822
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 79 tactactccctccgtaaactaatataaa 106 |||||||||||||||| |||||||||| Sbjct: 26923203 tactactccctccgtactctaatataaa 26923176
>gb|AC001080.1|HSAC001080 Homo sapiens (subclone 3_g7 from PAC H74) DNA sequence, complete sequence Length = 3115 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 tagatacattcatggtgtgt 48 |||||||||||||||||||| Sbjct: 2413 tagatacattcatggtgtgt 2432
>gb|AC171210.1| Mus musculus BAC clone RP23-36D15 from chromosome 7, complete sequence Length = 221010 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 tttaaacattcttatattagttta 153 ||||||||||||| |||||||||| Sbjct: 110977 tttaaacattcttctattagttta 111000 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,937,447 Number of Sequences: 3902068 Number of extensions: 3937447 Number of successful extensions: 90120 Number of sequences better than 10.0: 199 Number of HSP's better than 10.0 without gapping: 206 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87594 Number of HSP's gapped (non-prelim): 2505 length of query: 518 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 495 effective length of database: 17,143,297,704 effective search space: 8485932363480 effective search space used: 8485932363480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
