ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart11b04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 228 1e-56
2dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic D... 228 1e-56
3dbj|AK119210.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 1e-56
4dbj|AK104452.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 1e-56
5dbj|AK099017.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 1e-56
6dbj|AK061527.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 1e-56
7ref|XM_472398.1| Oryza sativa (japonica cultivar-group), predic... 74 5e-10
8emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4,... 74 5e-10
9dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 74 5e-10
10dbj|AK102032.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 5e-10
11emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete ... 44 0.42
12emb|BX640424.1| Bordetella parapertussis strain 12822, complete ... 44 0.42
13emb|BX537135.9| Zebrafish DNA sequence from clone DKEY-57B1 in l... 44 0.42
14emb|X01336.1|CURNA4 Cucumber mosaic virus (CMV) RNA4 3' terminal... 44 0.42
15emb|X01335.1|CURNA3 Cucumber mosaic virus (CMV) RNA3 3' terminal... 44 0.42
16emb|Z83819.1|HS146H21 Human DNA sequence from clone RP1-146H21 o... 42 1.6
17emb|AL451065.13| Human DNA sequence from clone RP11-274J16 on ch... 42 1.6
18emb|AL359262.9| Human DNA sequence from clone RP11-334O13 on chr... 42 1.6
19emb|BX914206.10| Zebrafish DNA sequence from clone CH211-174J14 ... 42 1.6
20dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.6
21gb|AC098645.3| Papio anubis clone RP41-470J23, complete sequence 42 1.6
22gb|AC098698.3| Papio anubis clone RP41-177A23, complete sequence 42 1.6
23gb|AC027689.10|AC027689 Homo sapiens chromosome 18 clone RP11-24... 42 1.6
24dbj|AP005793.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 1.6
25gb|AY430222.1| Regalecus glesne recombination activating protein... 40 6.5
26gb|AY380535.1| Salvelinus malma recombination-activating protein... 40 6.5
27gb|AC012162.11| Drosophila melanogaster clone BACR01N10, complet... 40 6.5
28ref|XM_959326.1| Neurospora crassa OR74A hypothetical protein (N... 40 6.5
29ref|XM_330701.1| Neurospora crassa OR74A hypothetical protein (N... 40 6.5
30emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete ch... 40 6.5
31gb|AC124429.4| Mus musculus BAC clone RP24-239N4 from chromosome... 40 6.5
32gb|AC141115.22| Medicago truncatula clone mth2-16b23, complete s... 40 6.5
33emb|AL590608.6| Human DNA sequence from clone RP11-363F12 on chr... 40 6.5
34ref|XM_500363.1| Yarrowia lipolytica CLIB122, YALI0B00880g predi... 40 6.5
35gb|CP000088.1| Thermobifida fusca YX, complete genome 40 6.5
36gb|AC153760.3| Loxodonta africana clone VMRC15-151E6, complete s... 40 6.5
37gb|AC092491.6| Homo sapiens 12 BAC RP11-125G9 (Roswell Park Canc... 40 6.5
38gb|AC069421.9| Homo sapiens 3 BAC RP11-528A4 (Roswell Park Cance... 40 6.5
39dbj|AB168329.1| Macaca fascicularis testis cDNA clone: QtsA-1127... 40 6.5
40gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 6.5
41ref|XM_391900.2| PREDICTED: Apis mellifera similar to CG8939-PA ... 40 6.5
42gb|AY552034.1| Hypancistrus sp. CAC-2004 RAG1 gene, exon 3 and p... 40 6.5
43gb|AC010730.11| Homo sapiens BAC clone RP11-357O18 from 2, compl... 40 6.5
44gb|AC010736.13| Homo sapiens BAC clone RP11-436F6 from 2, comple... 40 6.5
45gb|AC010967.3| Homo sapiens BAC clone RP11-7H13 from 2, complete... 40 6.5
46gb|AC008268.3|AC008268 Homo sapiens BAC clone RP11-34G16 from 2,... 40 6.5
47gb|AE003506.3| Drosophila melanogaster chromosome X, section 58 ... 40 6.5
48emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB1... 40 6.5 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  228 bits (115), Expect = 1e-56
 Identities = 202/231 (87%)
 Strand = Plus / Minus

                                                                            
Query: 170      gggaagaggtgcccggccgtgggcagctcatggtactgcacccatggcagcctctgcgcg 229
                ||||| ||||| || |||||||||||||| |||||| ||||||| ||||||| |||||||
Sbjct: 19614670 gggaacaggtggcccgccgtgggcagctcgtggtaccgcacccacggcagccgctgcgcg 19614611

                                                                            
Query: 230      atgtaccgtgagaggccaacgggcacgatgaggtcctccgcgccatgccataggtgcaca 289
                |||| ||| || ||    |||||||||||||||||||||||||| ||||| |||||||| 
Sbjct: 19614610 atgtgccgcgacagctgcacgggcacgatgaggtcctccgcgccgtgccacaggtgcacc 19614551

                                                                            
Query: 290      tccgcctcatcgccggggaacgggttctccatctccagcgggctccaaccccactttccg 349
                 |||||||  |  | |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 19614550 gccgcctcgcccgccgggaacgggttctccatctccagcgggctccacccccacttcccg 19614491

                                                                   
Query: 350      aacccgacgatcatgtccctgtgcaggctctcgtgctccccctgctgcctc 400
                ||||| || | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 19614490 aaccccaccagcatgtcccggtgcaggctctcgtgctccccctgctgcctc 19614440



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 458      gagaggatggcggggttgaagga 480
                |||||||||||||||||||||||
Sbjct: 19614271 gagaggatggcggggttgaagga 19614249
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>dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0605D08
          Length = 144340

 Score =  228 bits (115), Expect = 1e-56
 Identities = 202/231 (87%)
 Strand = Plus / Minus

                                                                         
Query: 170   gggaagaggtgcccggccgtgggcagctcatggtactgcacccatggcagcctctgcgcg 229
             ||||| ||||| || |||||||||||||| |||||| ||||||| ||||||| |||||||
Sbjct: 80956 gggaacaggtggcccgccgtgggcagctcgtggtaccgcacccacggcagccgctgcgcg 80897

                                                                         
Query: 230   atgtaccgtgagaggccaacgggcacgatgaggtcctccgcgccatgccataggtgcaca 289
             |||| ||| || ||    |||||||||||||||||||||||||| ||||| |||||||| 
Sbjct: 80896 atgtgccgcgacagctgcacgggcacgatgaggtcctccgcgccgtgccacaggtgcacc 80837

                                                                         
Query: 290   tccgcctcatcgccggggaacgggttctccatctccagcgggctccaaccccactttccg 349
              |||||||  |  | |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 80836 gccgcctcgcccgccgggaacgggttctccatctccagcgggctccacccccacttcccg 80777

                                                                
Query: 350   aacccgacgatcatgtccctgtgcaggctctcgtgctccccctgctgcctc 400
             ||||| || | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 80776 aaccccaccagcatgtcccggtgcaggctctcgtgctccccctgctgcctc 80726



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 458   gagaggatggcggggttgaagga 480
             |||||||||||||||||||||||
Sbjct: 80557 gagaggatggcggggttgaagga 80535
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>dbj|AK119210.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E04, full
            insert sequence
          Length = 1405

 Score =  228 bits (115), Expect = 1e-56
 Identities = 262/311 (84%)
 Strand = Plus / Minus

                                                                        
Query: 170  gggaagaggtgcccggccgtgggcagctcatggtactgcacccatggcagcctctgcgcg 229
            ||||| ||||| || |||||||||||||| |||||| ||||||| ||||||| |||||||
Sbjct: 1175 gggaacaggtggcccgccgtgggcagctcgtggtaccgcacccacggcagccgctgcgcg 1116

                                                                        
Query: 230  atgtaccgtgagaggccaacgggcacgatgaggtcctccgcgccatgccataggtgcaca 289
            |||| ||| || ||    |||||||||||||||||||||||||| ||||| |||||||| 
Sbjct: 1115 atgtgccgcgacagctgcacgggcacgatgaggtcctccgcgccgtgccacaggtgcacc 1056

                                                                        
Query: 290  tccgcctcatcgccggggaacgggttctccatctccagcgggctccaaccccactttccg 349
             |||||||  |  | |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 1055 gccgcctcgcccgccgggaacgggttctccatctccagcgggctccacccccacttcccg 996

                                                                        
Query: 350  aacccgacgatcatgtccctgtgcaggctctcgtgctccccctgctgcctcgccttgctc 409
            ||||| || | |||||||| ||||||||||||||||||||||||||||||| |||  |  
Sbjct: 995  aaccccaccagcatgtcccggtgcaggctctcgtgctccccctgctgcctcacctgcccg 936

                                                                        
Query: 410  gcgcaaggtcgggatgcgaacatggggatcatggccgtgtcttctctcgagaggatggcg 469
            ||| | |  ||| | |||||| ||||||| | || |  |||||| |  ||||||||||||
Sbjct: 935  gcgtaggtgcggtaggcgaacttggggatgacggtcaagtcttcccgggagaggatggcg 876

                       
Query: 470  gggttgaagga 480
            |||||||||||
Sbjct: 875  gggttgaagga 865
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>dbj|AK104452.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-H03, full
            insert sequence
          Length = 1399

 Score =  228 bits (115), Expect = 1e-56
 Identities = 262/311 (84%)
 Strand = Plus / Minus

                                                                        
Query: 170  gggaagaggtgcccggccgtgggcagctcatggtactgcacccatggcagcctctgcgcg 229
            ||||| ||||| || |||||||||||||| |||||| ||||||| ||||||| |||||||
Sbjct: 1175 gggaacaggtggcccgccgtgggcagctcgtggtaccgcacccacggcagccgctgcgcg 1116

                                                                        
Query: 230  atgtaccgtgagaggccaacgggcacgatgaggtcctccgcgccatgccataggtgcaca 289
            |||| ||| || ||    |||||||||||||||||||||||||| ||||| |||||||| 
Sbjct: 1115 atgtgccgcgacagctgcacgggcacgatgaggtcctccgcgccgtgccacaggtgcacc 1056

                                                                        
Query: 290  tccgcctcatcgccggggaacgggttctccatctccagcgggctccaaccccactttccg 349
             |||||||  |  | |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 1055 gccgcctcgcccgccgggaacgggttctccatctccagcgggctccacccccacttcccg 996

                                                                        
Query: 350  aacccgacgatcatgtccctgtgcaggctctcgtgctccccctgctgcctcgccttgctc 409
            ||||| || | |||||||| ||||||||||||||||||||||||||||||| |||  |  
Sbjct: 995  aaccccaccagcatgtcccggtgcaggctctcgtgctccccctgctgcctcacctgcccg 936

                                                                        
Query: 410  gcgcaaggtcgggatgcgaacatggggatcatggccgtgtcttctctcgagaggatggcg 469
            ||| | |  ||| | |||||| ||||||| | || |  |||||| |  ||||||||||||
Sbjct: 935  gcgtaggtgcggtaggcgaacttggggatgacggtcaagtcttcccgggagaggatggcg 876

                       
Query: 470  gggttgaagga 480
            |||||||||||
Sbjct: 875  gggttgaagga 865
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>dbj|AK099017.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119A16, full
            insert sequence
          Length = 1391

 Score =  228 bits (115), Expect = 1e-56
 Identities = 262/311 (84%)
 Strand = Plus / Minus

                                                                        
Query: 170  gggaagaggtgcccggccgtgggcagctcatggtactgcacccatggcagcctctgcgcg 229
            ||||| ||||| || |||||||||||||| |||||| ||||||| ||||||| |||||||
Sbjct: 1176 gggaacaggtggcccgccgtgggcagctcgtggtaccgcacccacggcagccgctgcgcg 1117

                                                                        
Query: 230  atgtaccgtgagaggccaacgggcacgatgaggtcctccgcgccatgccataggtgcaca 289
            |||| ||| || ||    |||||||||||||||||||||||||| ||||| |||||||| 
Sbjct: 1116 atgtgccgcgacagctgcacgggcacgatgaggtcctccgcgccgtgccacaggtgcacc 1057

                                                                        
Query: 290  tccgcctcatcgccggggaacgggttctccatctccagcgggctccaaccccactttccg 349
             |||||||  |  | |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 1056 gccgcctcgcccgccgggaacgggttctccatctccagcgggctccacccccacttcccg 997

                                                                        
Query: 350  aacccgacgatcatgtccctgtgcaggctctcgtgctccccctgctgcctcgccttgctc 409
            ||||| || | |||||||| ||||||||||||||||||||||||||||||| |||  |  
Sbjct: 996  aaccccaccagcatgtcccggtgcaggctctcgtgctccccctgctgcctcacctgcccg 937

                                                                        
Query: 410  gcgcaaggtcgggatgcgaacatggggatcatggccgtgtcttctctcgagaggatggcg 469
            ||| | |  ||| | |||||| ||||||| | || |  |||||| |  ||||||||||||
Sbjct: 936  gcgtaggtgcggtaggcgaacttggggatgacggtcaagtcttcccgggagaggatggcg 877

                       
Query: 470  gggttgaagga 480
            |||||||||||
Sbjct: 876  gggttgaagga 866
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>dbj|AK061527.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-D10, full
            insert sequence
          Length = 1409

 Score =  228 bits (115), Expect = 1e-56
 Identities = 262/311 (84%)
 Strand = Plus / Minus

                                                                        
Query: 170  gggaagaggtgcccggccgtgggcagctcatggtactgcacccatggcagcctctgcgcg 229
            ||||| ||||| || |||||||||||||| |||||| ||||||| ||||||| |||||||
Sbjct: 1175 gggaacaggtggcccgccgtgggcagctcgtggtaccgcacccacggcagccgctgcgcg 1116

                                                                        
Query: 230  atgtaccgtgagaggccaacgggcacgatgaggtcctccgcgccatgccataggtgcaca 289
            |||| ||| || ||    |||||||||||||||||||||||||| ||||| |||||||| 
Sbjct: 1115 atgtgccgcgacagctgcacgggcacgatgaggtcctccgcgccgtgccacaggtgcacc 1056

                                                                        
Query: 290  tccgcctcatcgccggggaacgggttctccatctccagcgggctccaaccccactttccg 349
             |||||||  |  | |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 1055 gccgcctcgcccgccgggaacgggttctccatctccagcgggctccacccccacttcccg 996

                                                                        
Query: 350  aacccgacgatcatgtccctgtgcaggctctcgtgctccccctgctgcctcgccttgctc 409
            ||||| || | |||||||| ||||||||||||||||||||||||||||||| |||  |  
Sbjct: 995  aaccccaccagcatgtcccggtgcaggctctcgtgctccccctgctgcctcacctgcccg 936

                                                                        
Query: 410  gcgcaaggtcgggatgcgaacatggggatcatggccgtgtcttctctcgagaggatggcg 469
            ||| | |  ||| | |||||| ||||||| | || |  |||||| |  ||||||||||||
Sbjct: 935  gcgtaggtgcggtaggcgaacttggggatgacggtcaagtcttcccgggagaggatggcg 876

                       
Query: 470  gggttgaagga 480
            |||||||||||
Sbjct: 875  gggttgaagga 865
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>ref|XM_472398.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1035

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 121/149 (81%)
 Strand = Plus / Minus

                                                                       
Query: 251 ggcacgatgaggtcctccgcgccatgccataggtgcacatccgcctcatcgccggggaac 310
           |||||||| |||||||| ||||| ||||| |||||||| | | | |   |||||| ||||
Sbjct: 884 ggcacgatcaggtcctcggcgccgtgccacaggtgcaccttccctttgccgccggcgaac 825

                                                                       
Query: 311 gggttctccatctccagcgggctccaaccccactttccgaacccgacgatcatgtccctg 370
           |||| ||| | ||||||||||||||| | |||||| ||||| |||||  ||||||| | |
Sbjct: 824 gggtcctcgagctccagcgggctccagctccacttcccgaatccgaccgtcatgtcgcgg 765

                                        
Query: 371 tgcaggctctcgtgctccccctgctgcct 399
           |||||||    || |||||||||||||||
Sbjct: 764 tgcaggcagctgtactccccctgctgcct 736
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>emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L04,
             complete sequence
          Length = 143301

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 121/149 (81%)
 Strand = Plus / Minus

                                                                         
Query: 251   ggcacgatgaggtcctccgcgccatgccataggtgcacatccgcctcatcgccggggaac 310
             |||||||| |||||||| ||||| ||||| |||||||| | | | |   |||||| ||||
Sbjct: 84208 ggcacgatcaggtcctcggcgccgtgccacaggtgcaccttccctttgccgccggcgaac 84149

                                                                         
Query: 311   gggttctccatctccagcgggctccaaccccactttccgaacccgacgatcatgtccctg 370
             |||| ||| | ||||||||||||||| | |||||| ||||| |||||  ||||||| | |
Sbjct: 84148 gggtcctcgagctccagcgggctccagctccacttcccgaatccgaccgtcatgtcgcgg 84089

                                          
Query: 371   tgcaggctctcgtgctccccctgctgcct 399
             |||||||    || |||||||||||||||
Sbjct: 84088 tgcaggcagctgtactccccctgctgcct 84060



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 120/149 (80%)
 Strand = Plus / Minus

                                                                         
Query: 251   ggcacgatgaggtcctccgcgccatgccataggtgcacatccgcctcatcgccggggaac 310
             |||||||| || ||||| ||||| ||||| |||||||| | | | ||  |||||| ||||
Sbjct: 92622 ggcacgatcagatcctcggcgccgtgccacaggtgcaccttcccttcgccgccggcgaac 92563

                                                                         
Query: 311   gggttctccatctccagcgggctccaaccccactttccgaacccgacgatcatgtccctg 370
             |||| ||| | |||||| |||||||| | |||||| ||||| |||||  ||||||| | |
Sbjct: 92562 gggtcctcgagctccagtgggctccagctccacttcccgaatccgactgtcatgtcgcgg 92503

                                          
Query: 371   tgcaggctctcgtgctccccctgctgcct 399
             |||||||   | | |||||||||||||||
Sbjct: 92502 tgcaggcagccatactccccctgctgcct 92474
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 121/149 (81%)
 Strand = Plus / Minus

                                                                            
Query: 251      ggcacgatgaggtcctccgcgccatgccataggtgcacatccgcctcatcgccggggaac 310
                |||||||| |||||||| ||||| ||||| |||||||| | | | |   |||||| ||||
Sbjct: 20353575 ggcacgatcaggtcctcggcgccgtgccacaggtgcaccttccctttgccgccggcgaac 20353516

                                                                            
Query: 311      gggttctccatctccagcgggctccaaccccactttccgaacccgacgatcatgtccctg 370
                |||| ||| | ||||||||||||||| | |||||| ||||| |||||  ||||||| | |
Sbjct: 20353515 gggtcctcgagctccagcgggctccagctccacttcccgaatccgaccgtcatgtcgcgg 20353456

                                             
Query: 371      tgcaggctctcgtgctccccctgctgcct 399
                |||||||    || |||||||||||||||
Sbjct: 20353455 tgcaggcagctgtactccccctgctgcct 20353427



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 120/149 (80%)
 Strand = Plus / Minus

                                                                            
Query: 251      ggcacgatgaggtcctccgcgccatgccataggtgcacatccgcctcatcgccggggaac 310
                |||||||| || ||||| ||||| ||||| |||||||| | | | ||  |||||| ||||
Sbjct: 20361989 ggcacgatcagatcctcggcgccgtgccacaggtgcaccttcccttcgccgccggcgaac 20361930

                                                                            
Query: 311      gggttctccatctccagcgggctccaaccccactttccgaacccgacgatcatgtccctg 370
                |||| ||| | |||||| |||||||| | |||||| ||||| |||||  ||||||| | |
Sbjct: 20361929 gggtcctcgagctccagtgggctccagctccacttcccgaatccgactgtcatgtcgcgg 20361870

                                             
Query: 371      tgcaggctctcgtgctccccctgctgcct 399
                |||||||   | | |||||||||||||||
Sbjct: 20361869 tgcaggcagccatactccccctgctgcct 20361841
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>dbj|AK102032.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033081A11, full
           insert sequence
          Length = 1293

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 121/149 (81%)
 Strand = Plus / Minus

                                                                       
Query: 251 ggcacgatgaggtcctccgcgccatgccataggtgcacatccgcctcatcgccggggaac 310
           |||||||| |||||||| ||||| ||||| |||||||| | | | |   |||||| ||||
Sbjct: 925 ggcacgatcaggtcctcggcgccgtgccacaggtgcaccttccctttgccgccggcgaac 866

                                                                       
Query: 311 gggttctccatctccagcgggctccaaccccactttccgaacccgacgatcatgtccctg 370
           |||| ||| | ||||||||||||||| | |||||| ||||| |||||  ||||||| | |
Sbjct: 865 gggtcctcgagctccagcgggctccagctccacttcccgaatccgaccgtcatgtcgcgg 806

                                        
Query: 371 tgcaggctctcgtgctccccctgctgcct 399
           |||||||    || |||||||||||||||
Sbjct: 805 tgcaggcagctgtactccccctgctgcct 777
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>emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete genome; segment 2/16
          Length = 347786

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 400    cgccttgctcgcgcaaggtcgg 421
              ||||||||||||||||||||||
Sbjct: 313430 cgccttgctcgcgcaaggtcgg 313409
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>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14
          Length = 349146

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 400    cgccttgctcgcgcaaggtcgg 421
              ||||||||||||||||||||||
Sbjct: 311516 cgccttgctcgcgcaaggtcgg 311495
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>emb|BX537135.9| Zebrafish DNA sequence from clone DKEY-57B1 in linkage group 14,
             complete sequence
          Length = 108341

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 239   gagaggccaacgggcacgatgaggtc 264
             |||||||| |||||||||||||||||
Sbjct: 24016 gagaggcccacgggcacgatgaggtc 24041
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>emb|X01336.1|CURNA4 Cucumber mosaic virus (CMV) RNA4 3' terminal region
          Length = 267

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 301 gccggggaacgggttctccatc 322
           ||||||||||||||||||||||
Sbjct: 54  gccggggaacgggttctccatc 75
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>emb|X01335.1|CURNA3 Cucumber mosaic virus (CMV) RNA3 3' terminal region
          Length = 267

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 301 gccggggaacgggttctccatc 322
           ||||||||||||||||||||||
Sbjct: 54  gccggggaacgggttctccatc 75
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>emb|Z83819.1|HS146H21 Human DNA sequence from clone RP1-146H21 on chromosome Xq22 Contains
             the 3' end of the CSTF2 gene for cleavage stimulation
             factor (3' pre-RNA, subunit 2, 64kDa), the NOX1 gene for
             NADPH oxidase 1 and two heterogeneous nuclear
             ribonucleoprotein A1 (HNRPA1) pseudogenes, complete
             sequence
          Length = 66424

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    acgttgttgaaagaaattaaa 35
             |||||||||||||||||||||
Sbjct: 63166 acgttgttgaaagaaattaaa 63186
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>emb|AL451065.13| Human DNA sequence from clone RP11-274J16 on chromosome 9 Contains the
             3' end of the FGD3 gene for FGD1 family, member 3
             (FLJ00004), a novel gene, a novel gene (MGC26847), a novel
             gene (MGC11115), the NINJ1 gene for ninjurin 1 and three
             CpG islands, complete sequence
          Length = 163689

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 15    acgttgttgaaagaaattaaa 35
             |||||||||||||||||||||
Sbjct: 88463 acgttgttgaaagaaattaaa 88443
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>emb|AL359262.9| Human DNA sequence from clone RP11-334O13 on chromosome 13 Contains a
            high-mobility group pseudogene, complete sequence
          Length = 162763

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 15   acgttgttgaaagaaattaaa 35
            |||||||||||||||||||||
Sbjct: 1247 acgttgttgaaagaaattaaa 1267
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>emb|BX914206.10| Zebrafish DNA sequence from clone CH211-174J14 in linkage group 18,
             complete sequence
          Length = 139321

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 18    ttgttgaaagaaattaaaaca 38
             |||||||||||||||||||||
Sbjct: 90599 ttgttgaaagaaattaaaaca 90619
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 253     cacgatgaggtcctccgcgccatgc 277
               |||||||| ||||||||||||||||
Sbjct: 4413078 cacgatgacgtcctccgcgccatgc 4413054
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>gb|AC098645.3| Papio anubis clone RP41-470J23, complete sequence
          Length = 193317

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 15     acgttgttgaaagaaattaaa 35
              |||||||||||||||||||||
Sbjct: 181327 acgttgttgaaagaaattaaa 181347
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>gb|AC098698.3| Papio anubis clone RP41-177A23, complete sequence
          Length = 165334

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    acgttgttgaaagaaattaaa 35
             |||||||||||||||||||||
Sbjct: 21401 acgttgttgaaagaaattaaa 21421
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>gb|AC027689.10|AC027689 Homo sapiens chromosome 18 clone RP11-245A17, complete sequence
          Length = 180573

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 18    ttgttgaaagaaattaaaaca 38
             |||||||||||||||||||||
Sbjct: 68604 ttgttgaaagaaattaaaaca 68584
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>dbj|AP005793.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-2N10, complete
            sequence
          Length = 51000

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 18   ttgttgaaagaaattaaaaca 38
            |||||||||||||||||||||
Sbjct: 3548 ttgttgaaagaaattaaaaca 3568
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>gb|AY430222.1| Regalecus glesne recombination activating protein 1 (RAG1) gene,
           partial cds
          Length = 1469

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 144 tgacatcccccatgccatcg 163
           ||||||||||||||||||||
Sbjct: 333 tgacatcccccatgccatcg 314
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>gb|AY380535.1| Salvelinus malma recombination-activating protein 1 (RAG1) gene,
           partial cds
          Length = 1556

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 144 tgacatcccccatgccatcg 163
           ||||||||||||||||||||
Sbjct: 366 tgacatcccccatgccatcg 347
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>gb|AC012162.11| Drosophila melanogaster clone BACR01N10, complete sequence
          Length = 169856

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    ttgaaagaaattaaaacaca 40
             ||||||||||||||||||||
Sbjct: 42427 ttgaaagaaattaaaacaca 42446
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>ref|XM_959326.1| Neurospora crassa OR74A hypothetical protein (NCU03266.1) partial
            mRNA
          Length = 2016

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 392  tgctgcctcgccttgctcgcgcaaggtc 419
            |||||||||||||||| |||| ||||||
Sbjct: 1100 tgctgcctcgccttgcacgcggaaggtc 1127
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>ref|XM_330701.1| Neurospora crassa OR74A hypothetical protein (NCU03266.1) partial
            mRNA
          Length = 2016

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 392  tgctgcctcgccttgctcgcgcaaggtc 419
            |||||||||||||||| |||| ||||||
Sbjct: 1100 tgctgcctcgccttgcacgcggaaggtc 1127
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>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12
          Length = 323450

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 141    ggatgacatcccccatgccatcggccat 168
              ||||||||||| ||||||||| ||||||
Sbjct: 125311 ggatgacatccgccatgccataggccat 125338
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>gb|AC124429.4| Mus musculus BAC clone RP24-239N4 from chromosome 13, complete sequence
          Length = 168858

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     ttaaaacacaggagcacaaa 50
              ||||||||||||||||||||
Sbjct: 112050 ttaaaacacaggagcacaaa 112069
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>gb|AC141115.22| Medicago truncatula clone mth2-16b23, complete sequence
          Length = 126187

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     cacaaaaaacagtagcacac 64
              ||||||||||||||||||||
Sbjct: 104476 cacaaaaaacagtagcacac 104495
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>emb|AL590608.6| Human DNA sequence from clone RP11-363F12 on chromosome 6, complete
              sequence
          Length = 200337

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 329    gggctccaaccccactttcc 348
              ||||||||||||||||||||
Sbjct: 178095 gggctccaaccccactttcc 178114
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>ref|XM_500363.1| Yarrowia lipolytica CLIB122, YALI0B00880g predicted mRNA
          Length = 1743

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 337 accccactttccgaacccga 356
           ||||||||||||||||||||
Sbjct: 819 accccactttccgaacccga 800
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 285     gcacatccgcctcatcgccg 304
               ||||||||||||||||||||
Sbjct: 2921333 gcacatccgcctcatcgccg 2921314
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>gb|AC153760.3| Loxodonta africana clone VMRC15-151E6, complete sequence
          Length = 130127

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    gttgttgaaagaaattaaaa 36
             ||||||||||||||||||||
Sbjct: 43499 gttgttgaaagaaattaaaa 43480
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>gb|AC092491.6| Homo sapiens 12 BAC RP11-125G9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 103308

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    acacaggagcacaaaaaaca 55
             ||||||||||||||||||||
Sbjct: 74098 acacaggagcacaaaaaaca 74117
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>gb|AC069421.9| Homo sapiens 3 BAC RP11-528A4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 157289

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   gggctccaaccccactttcc 348
             ||||||||||||||||||||
Sbjct: 59304 gggctccaaccccactttcc 59285
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>dbj|AB168329.1| Macaca fascicularis testis cDNA clone: QtsA-11272, similar to human
           solute carrier family 1 (neutral amino acidtransporter),
           member 5 (SLC1A5), mRNA, RefSeq: NM_005628.1
          Length = 2879

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 387 ccccctgctgcctcgccttg 406
           ||||||||||||||||||||
Sbjct: 741 ccccctgctgcctcgccttg 722
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 460     gaggatggcggggttgaagg 479
               ||||||||||||||||||||
Sbjct: 1130947 gaggatggcggggttgaagg 1130928
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>ref|XM_391900.2| PREDICTED: Apis mellifera similar to CG8939-PA (LOC408348), mRNA
          Length = 2588

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 21   ttgaaagaaattaaaacaca 40
            ||||||||||||||||||||
Sbjct: 1335 ttgaaagaaattaaaacaca 1354
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>gb|AY552034.1| Hypancistrus sp. CAC-2004 RAG1 gene, exon 3 and partial cds
          Length = 938

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 144 tgacatcccccatgccatcg 163
           ||||||||||||||||||||
Sbjct: 366 tgacatcccccatgccatcg 347
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>gb|AC010730.11| Homo sapiens BAC clone RP11-357O18 from 2, complete sequence
          Length = 165951

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  gggctccaaccccactttcc 348
            ||||||||||||||||||||
Sbjct: 7627 gggctccaaccccactttcc 7608
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>gb|AC010736.13| Homo sapiens BAC clone RP11-436F6 from 2, complete sequence
          Length = 204267

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    ttgttgaaagaaattaaaac 37
             ||||||||||||||||||||
Sbjct: 48500 ttgttgaaagaaattaaaac 48481
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>gb|AC010967.3| Homo sapiens BAC clone RP11-7H13 from 2, complete sequence
          Length = 197328

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 327    gcgggctccaaccccacttt 346
              ||||||||||||||||||||
Sbjct: 106419 gcgggctccaaccccacttt 106438
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>gb|AC008268.3|AC008268 Homo sapiens BAC clone RP11-34G16 from 2, complete sequence
          Length = 187883

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 329   gggctccaaccccactttcc 348
             ||||||||||||||||||||
Sbjct: 85978 gggctccaaccccactttcc 85997
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>gb|AE003506.3| Drosophila melanogaster chromosome X, section 58 of 74 of the complete
              sequence
          Length = 302073

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     ttgaaagaaattaaaacaca 40
              ||||||||||||||||||||
Sbjct: 282277 ttgaaagaaattaaaacaca 282258
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>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica
          Length = 3066374

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 337    accccactttccgaacccga 356
              ||||||||||||||||||||
Sbjct: 146769 accccactttccgaacccga 146788


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,869,276
Number of Sequences: 3902068
Number of extensions: 3869276
Number of successful extensions: 77774
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77532
Number of HSP's gapped (non-prelim): 226
length of query: 480
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 458
effective length of database: 17,147,199,772
effective search space: 7853417495576
effective search space used: 7853417495576
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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