ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart11b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IPYR_ORYSA (O22537) Soluble inorganic pyrophosphatase (EC 3.6.1.... 65 6e-11
2IPYR_SOLTU (Q43187) Soluble inorganic pyrophosphatase (EC 3.6.1.... 59 3e-09
3IPYR_MAIZE (O48556) Soluble inorganic pyrophosphatase (EC 3.6.1.... 59 3e-09
4IPYR_HORVD (O23979) Soluble inorganic pyrophosphatase (EC 3.6.1.... 59 3e-09
5IPYR_ARATH (P21216) Soluble inorganic pyrophosphatase (EC 3.6.1.... 50 2e-06
6IPYR_METTH (O26363) Inorganic pyrophosphatase (EC 3.6.1.1) (Pyro... 30 2.3
7RADC_XYLFT (Q87F21) DNA repair protein radC homolog 29 5.0
8RADC_XYLFA (Q9PGZ8) DNA repair protein radC homolog 29 5.0

>IPYR_ORYSA (O22537) Soluble inorganic pyrophosphatase (EC 3.6.1.1)|
           (Pyrophosphate phospho-hydrolase) (PPase)
          Length = 214

 Score = 65.1 bits (157), Expect = 6e-11
 Identities = 30/41 (73%), Positives = 35/41 (85%)
 Frame = -2

Query: 415 YKKNENKEVAVNDFLPSEDAYEAIQHSMDLYATYICEVLRR 293
           YKKNENKEVAVN+FLP+EDA  AI++SMDLY  YI E LR+
Sbjct: 174 YKKNENKEVAVNEFLPAEDAINAIKYSMDLYGAYIIESLRK 214



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>IPYR_SOLTU (Q43187) Soluble inorganic pyrophosphatase (EC 3.6.1.1)|
           (Pyrophosphate phospho-hydrolase) (PPase)
          Length = 211

 Score = 59.3 bits (142), Expect = 3e-09
 Identities = 28/41 (68%), Positives = 32/41 (78%)
 Frame = -2

Query: 415 YKKNENKEVAVNDFLPSEDAYEAIQHSMDLYATYICEVLRR 293
           YKKNENK+VAV+DFLP   A  AIQ+SMDLYA YI   LR+
Sbjct: 171 YKKNENKDVAVDDFLPPNSAVNAIQYSMDLYAEYILHSLRK 211



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>IPYR_MAIZE (O48556) Soluble inorganic pyrophosphatase (EC 3.6.1.1)|
           (Pyrophosphate phospho-hydrolase) (PPase)
          Length = 214

 Score = 59.3 bits (142), Expect = 3e-09
 Identities = 29/41 (70%), Positives = 34/41 (82%)
 Frame = -2

Query: 415 YKKNENKEVAVNDFLPSEDAYEAIQHSMDLYATYICEVLRR 293
           YKKNENKEVAV+ FLP+  A EAIQ+SMDLYA YI + LR+
Sbjct: 174 YKKNENKEVAVDAFLPATTAREAIQYSMDLYAQYILQSLRQ 214



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>IPYR_HORVD (O23979) Soluble inorganic pyrophosphatase (EC 3.6.1.1)|
           (Pyrophosphate phospho-hydrolase) (PPase)
          Length = 215

 Score = 59.3 bits (142), Expect = 3e-09
 Identities = 29/41 (70%), Positives = 34/41 (82%)
 Frame = -2

Query: 415 YKKNENKEVAVNDFLPSEDAYEAIQHSMDLYATYICEVLRR 293
           YKKNENKEVAV+ FLP+  A EAIQ+SMDLYA YI + LR+
Sbjct: 175 YKKNENKEVAVDAFLPATTAREAIQYSMDLYAQYILQSLRQ 215



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>IPYR_ARATH (P21216) Soluble inorganic pyrophosphatase (EC 3.6.1.1)|
           (Pyrophosphate phospho-hydrolase) (PPase)
          Length = 218

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 25/41 (60%), Positives = 31/41 (75%)
 Frame = -2

Query: 415 YKKNENKEVAVNDFLPSEDAYEAIQHSMDLYATYICEVLRR 293
           YKKNENK+V V  FLP++ A +AI+ SMDLYA YI   L+R
Sbjct: 178 YKKNENKKVDVEAFLPAQAAIDAIKDSMDLYAAYIKAGLQR 218



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>IPYR_METTH (O26363) Inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate|
           phospho-hydrolase) (PPase)
          Length = 176

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 415 YKKNENKEVAVNDFLPSEDAYEAIQHSMDLY 323
           YKK E K+     +  +E A+EA+ HS++LY
Sbjct: 140 YKKLEGKKTETLGWEGAEKAFEAVNHSIELY 170



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>RADC_XYLFT (Q87F21) DNA repair protein radC homolog|
          Length = 224

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 368 IGGRIRGHPALHGSLCHLHLRGP--EKVDNRSGDAMPLAG 255
           +G  +RGH A+  +   LH  GP  E +D   GD M L G
Sbjct: 34  LGSGLRGHDAVQTARNLLHTHGPLRELLDRPPGDLMRLPG 73



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>RADC_XYLFA (Q9PGZ8) DNA repair protein radC homolog|
          Length = 224

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 368 IGGRIRGHPALHGSLCHLHLRGP--EKVDNRSGDAMPLAG 255
           +G  +RGH A+  +   LH  GP  E +D   GD M L G
Sbjct: 34  LGSGLRGHDAVQTARNLLHTHGPLRELLDRPPGDLMRLPG 73


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,580,233
Number of Sequences: 219361
Number of extensions: 1071532
Number of successful extensions: 2262
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2262
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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