ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart11b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZSWM4_MOUSE (Q8C7B8) Zinc finger SWIM domain-containing protein 4 31 2.4
2BRSK2_HUMAN (Q8IWQ3) BR serine/threonine-protein kinase 2 (EC 2.... 29 6.9
3HEM6_SOYBN (P35055) Coproporphyrinogen III oxidase, chloroplast ... 29 6.9
4NAS9_CAEEL (P91137) Zinc metalloproteinase nas-9 precursor (EC 3... 29 9.0
5HEM6_TOBAC (Q42946) Coproporphyrinogen III oxidase, chloroplast ... 29 9.0

>ZSWM4_MOUSE (Q8C7B8) Zinc finger SWIM domain-containing protein 4|
          Length = 1101

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 239 VCIILAPRTKPRSKSEWWVLSGSVDRTPV 153
           VC+IL+P  KP  +S W  L G+ D+  V
Sbjct: 337 VCVILSPHCKPDERSGWLQLLGTWDKLDV 365



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>BRSK2_HUMAN (Q8IWQ3) BR serine/threonine-protein kinase 2 (EC 2.7.11.1)|
           (Serine/threonine-protein kinase 29) (SAD1B)
          Length = 736

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -1

Query: 508 NPRGSPMGMD--TAMATGKLSTVGTPTPLPP 422
           +PRGSP+     T + T K S  GTP P PP
Sbjct: 435 SPRGSPLPTPKGTPVHTPKESPAGTPNPTPP 465



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>HEM6_SOYBN (P35055) Coproporphyrinogen III oxidase, chloroplast precursor (EC|
           1.3.3.3) (Coproporphyrinogenase) (Coprogen oxidase)
          Length = 385

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 257 YFSDDVVCIILAPRTKPRSKSEWWVLSGSVDRTPVYIY 144
           YF  D      AP+  P +  +WW   G  D TP YI+
Sbjct: 192 YFETD------APKDAPGAPRQWW-FGGGTDLTPAYIF 222



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>NAS9_CAEEL (P91137) Zinc metalloproteinase nas-9 precursor (EC 3.4.24.21)|
           (Nematode astacin 9)
          Length = 546

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
 Frame = +1

Query: 49  HSKQRFPNHPRISTKLLPRYTGAPHRTAPKIAYIYTGVLSTLPLKTHHSDLDR------G 210
           H  +R+P HP+     LP++T  P      I Y    +L  +P    H  L        G
Sbjct: 106 HFCRRYPGHPKCQRGQLPQFTDVP-TIINTIIYNAGDLLPRVPTLNIHDPLAGLNSELVG 164

Query: 211 FVRGARI----MHTTSSEKYHDNCFSY 279
           F++  +     + +    + HD+C S+
Sbjct: 165 FIKSLQSQFGQLSSQQRNEIHDSCRSF 191



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>HEM6_TOBAC (Q42946) Coproporphyrinogen III oxidase, chloroplast precursor (EC|
           1.3.3.3) (Coproporphyrinogenase) (Coprogen oxidase)
          Length = 397

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 257 YFSDDVVCIILAPRTKPRSKSEWWVLSGSVDRTPVYIY 144
           YF  D      AP+  P +  +WW   G  D TP YI+
Sbjct: 204 YFETD------APKDAPGAPRQWW-FGGGTDFTPAYIF 234


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,419,222
Number of Sequences: 219361
Number of extensions: 1461341
Number of successful extensions: 3802
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3799
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3985467738
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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