Clone Name | rbart11a09 |
---|---|
Clone Library Name | barley_pub |
>GUN1_PERAE (P05522) Endoglucanase 1 precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Abscission cellulase 1) Length = 494 Score = 86.3 bits (212), Expect = 4e-17 Identities = 42/69 (60%), Positives = 51/69 (73%) Frame = -3 Query: 507 PARIGCKAGAAYYGSSAPNPNLLVGAVVGGPSNTSDNFPDARAVFQQSEPTTYINAPLLG 328 P I C AG Y SS PNPN+LVGA++GGP N D+F D R +QQSEP TYINAPL+G Sbjct: 424 PNSIPCNAGFQYLYSSPPNPNILVGAILGGPDNR-DSFSDDRNNYQQSEPATYINAPLVG 482 Query: 327 LLAYFSAHP 301 LA+F+A+P Sbjct: 483 ALAFFAANP 491
>GUN2_PERAE (P23666) Endoglucanase 2 (EC 3.2.1.4) (Endo-1,4-beta-glucanase)| (Abscission cellulase 2) (Fragment) Length = 130 Score = 85.1 bits (209), Expect = 1e-16 Identities = 41/69 (59%), Positives = 53/69 (76%) Frame = -3 Query: 507 PARIGCKAGAAYYGSSAPNPNLLVGAVVGGPSNTSDNFPDARAVFQQSEPTTYINAPLLG 328 P I C AG Y SS+PNPN+LVGA++GGP ++ D+F D R +QQSEP TYINAPL+G Sbjct: 60 PNPIPCNAGFQYLYSSSPNPNILVGAILGGP-DSRDSFSDDRNNYQQSEPATYINAPLVG 118 Query: 327 LLAYFSAHP 301 LA+F+A+P Sbjct: 119 ALAFFAANP 127
>GUN9_ARATH (Q9C9H5) Probable family 9 endoglucanase At1g71380 precursor (EC| 3.2.1.4) Length = 484 Score = 70.5 bits (171), Expect = 3e-12 Identities = 32/64 (50%), Positives = 43/64 (67%) Frame = -3 Query: 498 IGCKAGAAYYGSSAPNPNLLVGAVVGGPSNTSDNFPDARAVFQQSEPTTYINAPLLGLLA 319 +GC G + + PNPN+L GA+VGGP N +D +PD R + +EP TYINA +G LA Sbjct: 418 LGCNGGFQSFYTQNPNPNILTGAIVGGP-NQNDGYPDQRDDYSHAEPATYINAAFVGPLA 476 Query: 318 YFSA 307 YF+A Sbjct: 477 YFAA 480
>GUN_PHAVU (P22503) Endoglucanase precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Abscission cellulase) Length = 496 Score = 70.1 bits (170), Expect = 3e-12 Identities = 33/64 (51%), Positives = 47/64 (73%), Gaps = 1/64 (1%) Frame = -3 Query: 507 PARIGCKAGAA-YYGSSAPNPNLLVGAVVGGPSNTSDNFPDARAVFQQSEPTTYINAPLL 331 PA++GC AG + YY S+ PNPN VGA+VGGP +++D F DAR+ + +EPTTYINA + Sbjct: 428 PAKVGCNAGLSDYYNSANPNPNTHVGAIVGGP-DSNDRFNDARSDYSHAEPTTYINAAFV 486 Query: 330 GLLA 319 ++ Sbjct: 487 ASIS 490
>GUNB_CELFI (P26225) Endoglucanase B precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase B) (Cellulase B) Length = 1045 Score = 33.5 bits (75), Expect = 0.34 Identities = 17/47 (36%), Positives = 27/47 (57%) Frame = -3 Query: 459 APNPNLLVGAVVGGPSNTSDNFPDARAVFQQSEPTTYINAPLLGLLA 319 A + ++L GA+VGGP + +D + D+R + +E T NA LA Sbjct: 426 AQSRHVLYGALVGGPGSPNDAYTDSRQDYVANEVATDYNAGFTSALA 472
>FAT_DROME (P33450) Cadherin-related tumor suppressor precursor (Protein fat)| Length = 5147 Score = 33.5 bits (75), Expect = 0.34 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = +1 Query: 106 YRNNNTGAARQRDGSAHRSPYKTRTTNQACVPRPTTAKEGH-STALPAASSGPHISS 273 +++ N+G+ +Q+ H +P+ TR P PT+A H ST L S +SS Sbjct: 4791 HKHQNSGSQQQQQQHRHTAPFVTRNQGGQPPPPPTSASRTHQSTPLARLSPSSELSS 4847
>GUNI_CLOTM (Q02934) Endoglucanase 1 precursor (EC 3.2.1.4) (Endoglucanase I)| (EGI) (Endo-1,4-beta-glucanase) (Cellulase I) Length = 879 Score = 32.0 bits (71), Expect = 1.0 Identities = 18/43 (41%), Positives = 27/43 (62%) Frame = -3 Query: 447 NLLVGAVVGGPSNTSDNFPDARAVFQQSEPTTYINAPLLGLLA 319 ++L GA+VGGP +T DN+ D + + +E NA +GLLA Sbjct: 468 HVLYGALVGGPDST-DNYTDDISNYTCNEVACDYNAGFVGLLA 509
>EXO84_ASPFU (Q4WM32) Exocyst complex component exo84| Length = 683 Score = 32.0 bits (71), Expect = 1.0 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Frame = +1 Query: 70 TGKDRHPLHVEIYRNNNTGAARQR---DGSAHRSPYKTRTTNQACVP 201 T K R P+H+ + ++ AA++R D S HR P T+ + C P Sbjct: 276 TWKPRRPVHIVLLNDHLLVAAKKRKRVDASNHRGPVPTKLVAEECWP 322
>GUNF_CLOTM (P26224) Endoglucanase F precursor (EC 3.2.1.4) (EGF)| (Endo-1,4-beta-glucanase) (Cellulase F) Length = 739 Score = 31.6 bits (70), Expect = 1.3 Identities = 18/43 (41%), Positives = 26/43 (60%) Frame = -3 Query: 447 NLLVGAVVGGPSNTSDNFPDARAVFQQSEPTTYINAPLLGLLA 319 ++LVGA+VGGP SD++ D +Q +E NA +G LA Sbjct: 420 HILVGALVGGPDG-SDSYVDRLDDYQCNEVANDYNAGFVGALA 461
>GLI1_MOUSE (P47806) Zinc finger protein GLI1 (Glioma-associated oncogene| homolog) Length = 1111 Score = 30.0 bits (66), Expect = 3.8 Identities = 18/49 (36%), Positives = 22/49 (44%) Frame = +2 Query: 149 QPIAARTKQGLPTRLAFLGPRPLKRATPPHCPQRVAGHIYLQSVPSDWG 295 +P AR LP LGP P P HC Q+V+ Y P +WG Sbjct: 742 EPYEARGPGSLP-----LGPGPPTNYGPGHCAQQVS---YPDPTPENWG 782
>RIMB1_HUMAN (O95153) Peripheral-type benzodiazepine receptor-associated protein 1| (PRAX-1) (Peripheral benzodiazepine receptor-interacting protein) (PBR-IP) (RIM-binding protein 1) (RIM-BP1) Length = 1857 Score = 30.0 bits (66), Expect = 3.8 Identities = 20/50 (40%), Positives = 25/50 (50%) Frame = +1 Query: 70 TGKDRHPLHVEIYRNNNTGAARQRDGSAHRSPYKTRTTNQACVPRPTTAK 219 TG+ + PL R TG AR +DGS R P K V RP+TA+ Sbjct: 1568 TGRAKEPLS----RATETGEARGQDGSGRRGPQKRGVR----VLRPSTAE 1609
>TBCE_HUMAN (Q15813) Tubulin-specific chaperone E (Tubulin-folding cofactor E)| Length = 527 Score = 29.3 bits (64), Expect = 6.5 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 3/53 (5%) Frame = -1 Query: 239 NAVEWPSLAVVGRGTQAWLVVLVLY--GLRWADPSRCLA-APVLLFLYISTCN 90 N +++PS +V+ GT + L VLVL G+ WA+ RC+A P L LY+ + N Sbjct: 189 NKLKFPSGSVL-TGTLSVLKVLVLNQTGITWAEVLRCVAGCPGLEELYLESNN 240
>ICP47_CHV1E (Q8JP02) ICP47 protein (Infected cell protein 47) (Immediate-early| protein IE12) (Immediate-early-5) (Vmw12) (US12 protein) Length = 81 Score = 28.9 bits (63), Expect = 8.5 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%) Frame = +1 Query: 82 RHPLHVEIYRNNNTGAARQRDGSAHRSPYKTRT-----TNQACVPRPTTAKEGHSTALPA 246 R+ HV++ R A +R +A + R QA P+P+T + H +A A Sbjct: 19 RYQAHVDLRRELRAYADEERREAARAIAHPERPLLPPPATQAAPPQPSTREAAHPSAPTA 78 Query: 247 ASS 255 ASS Sbjct: 79 ASS 81
>MAP2_RAT (P15146) Microtubule-associated protein 2 (MAP 2) (MAP-2)| Length = 1861 Score = 28.9 bits (63), Expect = 8.5 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +1 Query: 172 TRTTNQACVPRPTTAKEGHSTALPAA 249 TR T+ +CV R TTA G S P+A Sbjct: 1501 TRPTHLSCVKRKTTATSGESAQAPSA 1526
>MUC4_HUMAN (Q99102) Mucin-4 (Tracheobronchial mucin) (Fragment)| Length = 610 Score = 28.9 bits (63), Expect = 8.5 Identities = 19/59 (32%), Positives = 28/59 (47%) Frame = +1 Query: 79 DRHPLHVEIYRNNNTGAARQRDGSAHRSPYKTRTTNQACVPRPTTAKEGHSTALPAASS 255 D PLHV + +TG A ++ S T T V P++A GH+T+LP + Sbjct: 200 DTTPLHVTDASSVSTGHATPLHVTS-LSSVSTGDTTPLPVTSPSSASSGHATSLPVTDA 257 Score = 28.9 bits (63), Expect = 8.5 Identities = 19/59 (32%), Positives = 28/59 (47%) Frame = +1 Query: 79 DRHPLHVEIYRNNNTGAARQRDGSAHRSPYKTRTTNQACVPRPTTAKEGHSTALPAASS 255 D PLHV + +TG A ++ S T T V P++A GH+T+LP + Sbjct: 72 DTTPLHVTDASSVSTGHATPLHVTS-LSSVSTGDTTPLPVTSPSSASSGHATSLPVTDA 129 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,264,456 Number of Sequences: 219361 Number of extensions: 1160580 Number of successful extensions: 3828 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3585 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3821 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)