ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart11a07 |
|---|---|
| Clone Library Name | barley_pub |
>IF5A_SENVE (Q9SC12) Eukaryotic translation initiation factor 5A (eIF-5A)| Length = 159 Score = 80.1 bits (196), Expect = 3e-15 Identities = 35/44 (79%), Positives = 42/44 (95%) Frame = -3 Query: 467 KLPTDDAILTQLKDGFAEGKDLALTVMSAMGEEQICAVKDVGPR 336 KLPTDDA+LTQ+KDGF EGKDL ++VMSAMGEEQICA+KD+GP+ Sbjct: 116 KLPTDDALLTQIKDGFGEGKDLVVSVMSAMGEEQICALKDIGPK 159
>IF5A2_MEDSA (Q945F4) Eukaryotic translation initiation factor 5A-2 (eIF-5A-2)| Length = 159 Score = 79.3 bits (194), Expect = 4e-15 Identities = 34/44 (77%), Positives = 43/44 (97%) Frame = -3 Query: 467 KLPTDDAILTQLKDGFAEGKDLALTVMSAMGEEQICAVKDVGPR 336 KLPTDD++LTQ+KDGFA+GKDL ++VMSAMGEEQICA+KD+GP+ Sbjct: 116 KLPTDDSLLTQIKDGFADGKDLVVSVMSAMGEEQICALKDIGPK 159
>IF5A2_NICPL (P24922) Eukaryotic translation initiation factor 5A-2 (eIF-5A-2)| (eIF-4D) Length = 159 Score = 78.2 bits (191), Expect = 1e-14 Identities = 34/44 (77%), Positives = 42/44 (95%) Frame = -3 Query: 467 KLPTDDAILTQLKDGFAEGKDLALTVMSAMGEEQICAVKDVGPR 336 +LPTDD +LTQ+KDGFAEGKDL ++VMSAMGEEQICA+KD+GP+ Sbjct: 116 RLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159
>IF5A5_SOLTU (P56337) Eukaryotic translation initiation factor 5A-5 (eIF-5A-5)| (eIF-4D) Length = 159 Score = 77.0 bits (188), Expect = 2e-14 Identities = 33/44 (75%), Positives = 40/44 (90%) Frame = -3 Query: 467 KLPTDDAILTQLKDGFAEGKDLALTVMSAMGEEQICAVKDVGPR 336 +LPTDD +L Q+KDGFAEGKDL L+VMSAMGEEQIC +KD+GP+ Sbjct: 116 RLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159
>IF5A1_LYCES (Q9AXQ6) Eukaryotic translation initiation factor 5A-1 (eIF-5A-1)| Length = 159 Score = 77.0 bits (188), Expect = 2e-14 Identities = 33/44 (75%), Positives = 40/44 (90%) Frame = -3 Query: 467 KLPTDDAILTQLKDGFAEGKDLALTVMSAMGEEQICAVKDVGPR 336 +LPTDD +L Q+KDGFAEGKDL L+VMSAMGEEQIC +KD+GP+ Sbjct: 116 RLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159
>IF5A1_MEDSA (P26564) Eukaryotic translation initiation factor 5A-1 (eIF-5A-1)| (eIF-4D) Length = 161 Score = 77.0 bits (188), Expect = 2e-14 Identities = 34/42 (80%), Positives = 41/42 (97%) Frame = -3 Query: 467 KLPTDDAILTQLKDGFAEGKDLALTVMSAMGEEQICAVKDVG 342 KLPTDD++LTQ+KDGFAEGKDL ++VMSAMGEEQICA+KD+G Sbjct: 117 KLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIG 158
>IF5A1_TOBAC (P69040) Eukaryotic translation initiation factor 5A-1 (eIF-5A-1)| (eIF-4D) Length = 159 Score = 74.3 bits (181), Expect = 1e-13 Identities = 33/44 (75%), Positives = 39/44 (88%) Frame = -3 Query: 467 KLPTDDAILTQLKDGFAEGKDLALTVMSAMGEEQICAVKDVGPR 336 +LPTDD +L +KDGFAEGKDL L+VMSAMGEEQIC +KDVGP+ Sbjct: 116 RLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159
>IF5A1_NICPL (P69039) Eukaryotic translation initiation factor 5A-1 (eIF-5A-1)| (eIF-4D) Length = 159 Score = 74.3 bits (181), Expect = 1e-13 Identities = 33/44 (75%), Positives = 39/44 (88%) Frame = -3 Query: 467 KLPTDDAILTQLKDGFAEGKDLALTVMSAMGEEQICAVKDVGPR 336 +LPTDD +L +KDGFAEGKDL L+VMSAMGEEQIC +KDVGP+ Sbjct: 116 RLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159
>IF5A3_ARATH (Q9C505) Eukaryotic translation initiation factor 5A-3 (eIF-5A-3)| Length = 158 Score = 73.9 bits (180), Expect = 2e-13 Identities = 32/44 (72%), Positives = 42/44 (95%) Frame = -3 Query: 467 KLPTDDAILTQLKDGFAEGKDLALTVMSAMGEEQICAVKDVGPR 336 KLPTD+A+LTQLK+GF EGKD+ ++VMSAMGEEQ+CA+K+VGP+ Sbjct: 115 KLPTDEALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKEVGPK 158
>IF5A4_SOLTU (P56336) Eukaryotic translation initiation factor 5A-4 (eIF-5A-4)| (eIF-4D) Length = 159 Score = 73.2 bits (178), Expect = 3e-13 Identities = 32/44 (72%), Positives = 42/44 (95%) Frame = -3 Query: 467 KLPTDDAILTQLKDGFAEGKDLALTVMSAMGEEQICAVKDVGPR 336 +LPTDD++L+Q+KDGFAEGKDL ++VMSAMGEEQI A+KD+GP+ Sbjct: 116 RLPTDDSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159
>IF5A1_SOLTU (P56333) Eukaryotic translation initiation factor 5A-1/2| (eIF-5A-1/2) (eIF-4D) Length = 160 Score = 72.8 bits (177), Expect = 4e-13 Identities = 33/44 (75%), Positives = 39/44 (88%) Frame = -3 Query: 467 KLPTDDAILTQLKDGFAEGKDLALTVMSAMGEEQICAVKDVGPR 336 +LPTDDA+L Q+K GF EGKDL L+VMSAMGEEQICAVKD+G + Sbjct: 116 RLPTDDALLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTK 159
>IF5A_MANES (Q9AXJ4) Eukaryotic translation initiation factor 5A (eIF-5A)| Length = 160 Score = 72.4 bits (176), Expect = 5e-13 Identities = 30/44 (68%), Positives = 42/44 (95%) Frame = -3 Query: 467 KLPTDDAILTQLKDGFAEGKDLALTVMSAMGEEQICAVKDVGPR 336 +LPTD+ +L+Q+KDGFAEGKDL ++VMSAMGEE+IC++KD+GP+ Sbjct: 116 RLPTDENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPK 159
>IF5A4_LYCES (Q9AXQ3) Eukaryotic translation initiation factor 5A-4 (eIF-5A-4)| Length = 160 Score = 71.2 bits (173), Expect = 1e-12 Identities = 32/44 (72%), Positives = 38/44 (86%) Frame = -3 Query: 467 KLPTDDAILTQLKDGFAEGKDLALTVMSAMGEEQICAVKDVGPR 336 +LPTDD +L Q+K GF EGKDL L+VMSAMGEEQICAVKD+G + Sbjct: 116 RLPTDDTLLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTK 159
>IF5A_MAIZE (P80639) Eukaryotic translation initiation factor 5A (eIF-5A)| (eIF-4D) Length = 160 Score = 68.9 bits (167), Expect = 6e-12 Identities = 29/44 (65%), Positives = 38/44 (86%) Frame = -3 Query: 467 KLPTDDAILTQLKDGFAEGKDLALTVMSAMGEEQICAVKDVGPR 336 +LPTD+ ++ Q+K+GF GKDL +TV SAMGEEQICA+KDVGP+ Sbjct: 117 RLPTDETLVAQIKEGFESGKDLVVTVQSAMGEEQICALKDVGPK 160
>IF5A3_LYCES (Q9AXQ4) Eukaryotic translation initiation factor 5A-3 (eIF-5A-3)| Length = 159 Score = 67.8 bits (164), Expect = 1e-11 Identities = 30/44 (68%), Positives = 40/44 (90%) Frame = -3 Query: 467 KLPTDDAILTQLKDGFAEGKDLALTVMSAMGEEQICAVKDVGPR 336 +LPTD+ +L+ +KDGFAEGKDL ++VMSAMGEEQI A+KD+GP+ Sbjct: 116 RLPTDENLLSLIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159
>IF5A3_SOLTU (P56335) Eukaryotic translation initiation factor 5A-3 (eIF-5A-3)| (eIF-4D) Length = 160 Score = 66.2 bits (160), Expect = 4e-11 Identities = 29/44 (65%), Positives = 39/44 (88%) Frame = -3 Query: 467 KLPTDDAILTQLKDGFAEGKDLALTVMSAMGEEQICAVKDVGPR 336 +LPTD+++L Q+KDGF EGKDL ++VMSAMGEEQI A+KD+G + Sbjct: 116 RLPTDESLLKQVKDGFQEGKDLVVSVMSAMGEEQINAIKDIGTK 159
>IF5A2_LYCES (Q9AXQ5) Eukaryotic translation initiation factor 5A-2 (eIF-5A-2)| Length = 160 Score = 65.9 bits (159), Expect = 5e-11 Identities = 31/44 (70%), Positives = 38/44 (86%) Frame = -3 Query: 467 KLPTDDAILTQLKDGFAEGKDLALTVMSAMGEEQICAVKDVGPR 336 +LPTD+ +L Q+KDGF EGKDL ++VMSAMGEEQI AVKDVG + Sbjct: 116 RLPTDENLLKQVKDGFQEGKDLVVSVMSAMGEEQINAVKDVGTK 159
>IF5A1_ARATH (Q9XI91) Eukaryotic translation initiation factor 5A-1 (eIF-5A-1)| Length = 158 Score = 65.5 bits (158), Expect = 7e-11 Identities = 29/44 (65%), Positives = 37/44 (84%) Frame = -3 Query: 467 KLPTDDAILTQLKDGFAEGKDLALTVMSAMGEEQICAVKDVGPR 336 KLP DD +L Q+K GF +GKDL ++VMSAMGEEQI A+KD+GP+ Sbjct: 115 KLPNDDTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158
>IF5A_DIACA (Q9AXQ7) Eukaryotic translation initiation factor 5A (eIF-5A)| Length = 160 Score = 63.5 bits (153), Expect = 2e-10 Identities = 29/41 (70%), Positives = 35/41 (85%) Frame = -3 Query: 467 KLPTDDAILTQLKDGFAEGKDLALTVMSAMGEEQICAVKDV 345 KLP D+A++ Q+K+GF GKDL L+VM AMGEEQICAVKDV Sbjct: 116 KLPADEALVKQMKEGFEAGKDLILSVMCAMGEEQICAVKDV 156
>IF5A2_ARATH (Q93VP3) Eukaryotic translation initiation factor 5A-2 (eIF-5A-2)| Length = 159 Score = 63.5 bits (153), Expect = 2e-10 Identities = 28/42 (66%), Positives = 36/42 (85%) Frame = -3 Query: 467 KLPTDDAILTQLKDGFAEGKDLALTVMSAMGEEQICAVKDVG 342 KLPTDD + Q++ GF EGKD+ ++VMS+MGEEQICAVK+VG Sbjct: 115 KLPTDDGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVG 156
>IF5A2_SCHPO (Q9UST4) Eukaryotic translation initiation factor 5A-2 (eIF-5A-2)| Length = 157 Score = 39.3 bits (90), Expect = 0.005 Identities = 17/30 (56%), Positives = 24/30 (80%) Frame = -3 Query: 437 QLKDGFAEGKDLALTVMSAMGEEQICAVKD 348 ++++GF EGKDL +TV+SAMGEE A +D Sbjct: 124 EIEEGFEEGKDLIITVVSAMGEEIALACRD 153
>IF5A1_SCHPO (P56289) Eukaryotic translation initiation factor 5A-1 (eIF-5A-1)| Length = 157 Score = 38.5 bits (88), Expect = 0.009 Identities = 16/30 (53%), Positives = 24/30 (80%) Frame = -3 Query: 437 QLKDGFAEGKDLALTVMSAMGEEQICAVKD 348 ++++GF EG+DL +TV+SAMGEE A +D Sbjct: 124 EIEEGFDEGRDLIITVVSAMGEETALACRD 153
>IF5A_SPOFR (P62925) Eukaryotic translation initiation factor 5A (eIF-5A)| Length = 160 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/39 (46%), Positives = 25/39 (64%) Frame = -3 Query: 467 KLPTDDAILTQLKDGFAEGKDLALTVMSAMGEEQICAVK 351 K+P D + TQL+ F GK+L TV+ + GEE + AVK Sbjct: 116 KIPDGD-LGTQLRSDFDSGKELLCTVLKSCGEECVIAVK 153
>IF5A_SPOEX (P62924) Eukaryotic translation initiation factor 5A (eIF-5A)| Length = 160 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/39 (46%), Positives = 25/39 (64%) Frame = -3 Query: 467 KLPTDDAILTQLKDGFAEGKDLALTVMSAMGEEQICAVK 351 K+P D + TQL+ F GK+L TV+ + GEE + AVK Sbjct: 116 KIPDGD-LGTQLRSDFDSGKELLCTVLKSCGEECVIAVK 153
>IF5A_CANAL (O94083) Eukaryotic translation initiation factor 5A (eIF-5A)| (eIF-4D) Length = 157 Score = 33.9 bits (76), Expect = 0.21 Identities = 15/30 (50%), Positives = 22/30 (73%) Frame = -3 Query: 437 QLKDGFAEGKDLALTVMSAMGEEQICAVKD 348 +L+ F EGKDL +T++SAMGEE + K+ Sbjct: 122 KLQSEFDEGKDLIVTIISAMGEEAAISYKE 151
>IF5A2_YEAST (P23301) Eukaryotic translation initiation factor 5A-2 (eIF-5A-2)| (eIF-4D) (Hypusine-containing protein HP2) Length = 156 Score = 33.9 bits (76), Expect = 0.21 Identities = 15/29 (51%), Positives = 21/29 (72%) Frame = -3 Query: 434 LKDGFAEGKDLALTVMSAMGEEQICAVKD 348 L+ F EGKDL +T++SAMGEE + K+ Sbjct: 123 LQTAFDEGKDLMVTIISAMGEEAAISFKE 151
>IF5A1_YEAST (P19211) Eukaryotic translation initiation factor 5A-1 (eIF-5A-1)| (eIF-4D) (Hypusine-containing protein HP1) Length = 156 Score = 33.5 bits (75), Expect = 0.28 Identities = 17/39 (43%), Positives = 25/39 (64%) Frame = -3 Query: 434 LKDGFAEGKDLALTVMSAMGEEQICAVKDVGPR*LPRSE 318 ++ F EGKDL +T++SAMGEE + K+ PRS+ Sbjct: 123 MQAAFDEGKDLMVTIISAMGEEAAISFKEA-----PRSD 156
>IF5A_DROME (Q9GU68) Eukaryotic translation initiation factor 5A (eIF-5A)| Length = 159 Score = 31.6 bits (70), Expect = 1.0 Identities = 15/29 (51%), Positives = 19/29 (65%) Frame = -3 Query: 437 QLKDGFAEGKDLALTVMSAMGEEQICAVK 351 QL+ F GKDL TV+ A GEE + A+K Sbjct: 124 QLRLDFDSGKDLLCTVLKACGEECVIAIK 152
>GR36C_DROME (Q8INZ2) Putative gustatory receptor 36c| Length = 390 Score = 31.2 bits (69), Expect = 1.4 Identities = 18/52 (34%), Positives = 26/52 (50%) Frame = +2 Query: 65 WHTVCTVPDQSIIDTKYIYKTIGNTRVPNVTDDR*W*ADVLHPAITALDSGL 220 W T+ + S I YIY GNT + N R A++LH + A+ +GL Sbjct: 37 WSTLYAIALDSCIFALYIYHWTGNTNIVNAIFGR---ANMLHEYVVAILTGL 85
>TOP3B_MOUSE (Q9Z321) DNA topoisomerase 3-beta-1 (EC 5.99.1.2) (DNA| topoisomerase III beta-1) Length = 862 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 5/39 (12%) Frame = -2 Query: 399 ADCHVGHGGGADLRS-----QGRRPQVTSSERRGQDKLS 298 A CH H GG R +GRRP + RR +DK+S Sbjct: 817 ASCHPMHRGGPGRRQGRGRGRGRRPPGKPNPRRPKDKMS 855
>FBIC_MYCLE (Q9CBX6) FO synthase (EC 2.5.1.-)| (7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase) Length = 863 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 6/41 (14%) Frame = -3 Query: 446 ILTQLKDGFAEGKDLALTVMSAMGEE--QICA----VKDVG 342 +L + +DGFA D A+ M+A GE+ +CA V+DVG Sbjct: 36 VLRRARDGFALNIDEAVVAMTARGEDLADLCASAARVRDVG 76
>EXP13_ARATH (Q9M9P0) Alpha-expansin 13 precursor (AtEXPA13) (At-EXP13) (AtEx13)| (Ath-ExpAlpha-1.22) Length = 266 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = -2 Query: 429 GWIC*GEGFGADCHVGHGGGADLRSQGRRPQVTSSER 319 GW+ G +G + H+ ADLR+Q +VTSS+R Sbjct: 207 GWLPMGRNWGQNWHIN----ADLRNQALSFEVTSSDR 239
>DIHR_ACHDO (Q16983) Diuretic hormone receptor precursor (DH-R)| Length = 441 Score = 28.5 bits (62), Expect = 8.9 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -1 Query: 94 LIWDGANCMPETP 56 + WDG NC PETP Sbjct: 64 IAWDGVNCWPETP 76 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,099,091 Number of Sequences: 219361 Number of extensions: 1363204 Number of successful extensions: 3448 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 3284 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3448 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
