Clone Information

BLAST Search Result

Clone Name	rbart11a05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK073307.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	335	8e-89
2	dbj\|AK063917.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	335	8e-89
3	gb\|AY108935.1\| Zea mays PCO091688 mRNA sequence	323	3e-85
4	ref\|XM_480999.1\| Oryza sativa (japonica cultivar-group), mRNA	262	1e-66
5	gb\|AC107206.4\| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genom...	218	1e-53
6	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	218	1e-53
7	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	218	1e-53
8	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	167	4e-38
9	dbj\|AP005799.3\| Oryza sativa (japonica cultivar-group) genomic D...	167	4e-38
10	dbj\|AK059045.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	50	0.007
11	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.027
12	dbj\|AP006168.3\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.027
13	dbj\|AK072410.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.027
14	ref\|XM_476364.1\| Oryza sativa (japonica cultivar-group), mRNA	46	0.11
15	ref\|NM_194218.2\| Oryza sativa (japonica cultivar-group), mRNA	46	0.11
16	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.11
17	dbj\|AP005187.5\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.11
18	dbj\|AK109056.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	46	0.11
19	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.42
20	dbj\|AP005707.3\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.42
21	dbj\|AP005683.2\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.42
22	dbj\|AK060606.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.42
23	gb\|DP000063.1\| Oryctolagus cuniculus target 117 genomic scaffold	42	1.7
24	gb\|AC026398.5\| Homo sapiens chromosome 5 clone CTB-127M13, compl...	42	1.7
25	gb\|AF038840.1\|AF038840 Dendrobium crumenatum 1-aminocyclopropane...	42	1.7
26	gb\|AY598795.1\| Laelia anceps 1-aminocyclopropane-1-carboxylate o...	40	6.6
27	gb\|AY598794.1\| Cattleya intermedia 1-aminocyclopropane-1-carboxy...	40	6.6
28	gb\|AY598793.1\| Cattleya bicolor 1-aminocyclopropane-1-carboxylat...	40	6.6
29	emb\|AL589703.6\| Human DNA sequence from clone RP11-127L21 on chr...	40	6.6
30	gb\|AC026226.9\| Homo sapiens chromosome 10 clone RP11-81B10, comp...	40	6.6
31	gb\|AC068924.11\| Oryza sativa chromosome 10 BAC OSJNBa0026L12 gen...	40	6.6
32	gb\|AC004561.3\| Arabidopsis thaliana chromosome 2 clone F16P2 map...	40	6.6
33	gb\|AC016343.5\| Homo sapiens chromosome 15, clone RP11-142M4, com...	40	6.6
34	gb\|CP000248.1\| Novosphingobium aromaticivorans DSM 12444, comple...	40	6.6
35	dbj\|AK045273.1\| Mus musculus 9.5 days embryo parthenogenote cDNA...	40	6.6
36	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.6
37	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.6
38	gb\|AC003981.2\|AC003981 Genomic sequence for Arabidopsis thaliana...	40	6.6
39	gb\|AC051643.5\| Homo sapiens chromosome 15, clone RP11-615L8, com...	40	6.6
40	gb\|AC012190.3\|T22I11 Arabidopsis thaliana chromosome 1 BAC T22I1...	40	6.6
41	gb\|AC007887.9\|AC007887 Genomic sequence for Arabidopsis thaliana...	40	6.6
42	dbj\|AP005170.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.6
43	dbj\|AP004785.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.6
44	dbj\|AP005926.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.6
45	emb\|AL928908.16\| Zebrafish DNA sequence from clone DKEY-221L4 in...	40	6.6
46	gb\|AE005109.1\| Halobacterium sp. NRC-1 section 140 of 170 of the...	40	6.6
47	dbj\|AB010693.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	40	6.6
48	dbj\|AB028611.1\| Arabidopsis thaliana genomic DNA, chromosome 3, ...	40	6.6
49	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.6
50	emb\|AL606908.10\| Mouse DNA sequence from clone RP23-273D6 on chr...	40	6.6

>dbj|AK073307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026A10, full
            insert sequence
          Length = 1337

 Score =  335 bits (169), Expect = 8e-89
 Identities = 301/345 (87%)
 Strand = Plus / Minus

                                                                        
Query: 144  gatctgtacgttttcgacgtccagctttttgaagttgctgttcttcctggtgctgaagaa 203
            |||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1104 gatctggacgttctccacgtccagcttcttgaagttgctgttcttcctggtgctgaagaa 1045

                                                                        
Query: 204  gtggccccagttgtaggcgtcgtacctggcgggcctctcgtcgctcaccatctcctccaa 263
             | |||||||||||||| || ||||||||| || |||||||||||||| | |||||||| 
Sbjct: 1044 ttcgccccagttgtaggggttgtacctggccgggctctcgtcgctcacgacctcctccag 985

                                                                        
Query: 264  cggctcgaccatggcgtcgctgccggggttgaagaagtagggcatggagaacctctcctt 323
             ||||| ||||||| || ||   | |||||||||||| | || |||||||||||||||||
Sbjct: 984  tggctccaccatggtgtggcccgccgggttgaagaagaaagggatggagaacctctcctt 925

                                                                        
Query: 324  gtccgagttgacggacaccctgtgctcggcgctctcgtacctgtcgttgctccacacctg 383
             |||  ||| || | ||||| |||||| ||||||||||||||||| ||||||||||||||
Sbjct: 924  ctccacgttcaccgccacccggtgctccgcgctctcgtacctgtcattgctccacacctg 865

                                                                        
Query: 384  gatgatgtcgccgacgttaatgacgtaggagtccgggacgggcctaacgcgcacccactc 443
            |||||||||||||||||| |||| | ||||||  ||||||||||| ||||||||||||||
Sbjct: 864  gatgatgtcgccgacgttgatgatgaaggagtgagggacgggcctgacgcgcacccactc 805

                                                         
Query: 444  gccgtcggagcggtggcggacgtcgagcccgccaacgtcgtcctg 488
            ||||||||| ||| ||||||||||||| ||||| || ||||||||
Sbjct: 804  gccgtcggatcggcggcggacgtcgaggccgccgacatcgtcctg 760

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>dbj|AK063917.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-B03, full
            insert sequence
          Length = 1449

 Score =  335 bits (169), Expect = 8e-89
 Identities = 301/345 (87%)
 Strand = Plus / Minus

                                                                        
Query: 144  gatctgtacgttttcgacgtccagctttttgaagttgctgttcttcctggtgctgaagaa 203
            |||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1210 gatctggacgttctccacgtccagcttcttgaagttgctgttcttcctggtgctgaagaa 1151

                                                                        
Query: 204  gtggccccagttgtaggcgtcgtacctggcgggcctctcgtcgctcaccatctcctccaa 263
             | |||||||||||||| || ||||||||| || |||||||||||||| | |||||||| 
Sbjct: 1150 ttcgccccagttgtaggggttgtacctggccgggctctcgtcgctcacgacctcctccag 1091

                                                                        
Query: 264  cggctcgaccatggcgtcgctgccggggttgaagaagtagggcatggagaacctctcctt 323
             ||||| ||||||| || ||   | |||||||||||| | || |||||||||||||||||
Sbjct: 1090 tggctccaccatggtgtggcccgccgggttgaagaagaaagggatggagaacctctcctt 1031

                                                                        
Query: 324  gtccgagttgacggacaccctgtgctcggcgctctcgtacctgtcgttgctccacacctg 383
             |||  ||| || | ||||| |||||| ||||||||||||||||| ||||||||||||||
Sbjct: 1030 ctccacgttcaccgccacccggtgctccgcgctctcgtacctgtcattgctccacacctg 971

                                                                        
Query: 384  gatgatgtcgccgacgttaatgacgtaggagtccgggacgggcctaacgcgcacccactc 443
            |||||||||||||||||| |||| | ||||||  ||||||||||| ||||||||||||||
Sbjct: 970  gatgatgtcgccgacgttgatgatgaaggagtgagggacgggcctgacgcgcacccactc 911

                                                         
Query: 444  gccgtcggagcggtggcggacgtcgagcccgccaacgtcgtcctg 488
            ||||||||| ||| ||||||||||||| ||||| || ||||||||
Sbjct: 910  gccgtcggatcggcggcggacgtcgaggccgccgacatcgtcctg 866

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>gb|AY108935.1| Zea mays PCO091688 mRNA sequence
          Length = 1084

 Score =  323 bits (163), Expect = 3e-85
 Identities = 283/323 (87%)
 Strand = Plus / Minus

                                                                       
Query: 166 agctttttgaagttgctgttcttcctggtgctgaagaagtggccccagttgtaggcgtcg 225
           ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 796 agcttcttgaagttgctgttcttcctggtgctgaagaagtcgccccagttgtaggcgtcg 737

                                                                       
Query: 226 tacctggcgggcctctcgtcgctcaccatctcctccaacggctcgaccatggcgtcgctg 285
           |||||||  ||    || | |||||||| |||||||| |||||| ||||||| || | | 
Sbjct: 736 tacctgggcggatcgtccttgctcaccagctcctccaccggctccaccatggtgtaggtc 677

                                                                       
Query: 286 ccggggttgaagaagtagggcatggagaacctctccttgtccgagttgacggacaccctg 345
            | ||||||||||||||||||||||||||||||||| |  ||||||| || ||||||| |
Sbjct: 676 gccgggttgaagaagtagggcatggagaacctctccctcgccgagttcaccgacacccgg 617

                                                                       
Query: 346 tgctcggcgctctcgtacctgtcgttgctccacacctggatgatgtcgccgacgttaatg 405
           ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 616 tgctccgcgctctcgtacctgtcgttgctccacacctggatgaggtcgccgacgttgatg 557

                                                                       
Query: 406 acgtaggagtccgggacgggcctaacgcgcacccactcgccgtcggagcggtggcggacg 465
           | | | ||||| || |||||||| ||||| ||||||||||||||||||||  | ||||||
Sbjct: 556 atgaacgagtcgggcacgggcctgacgcggacccactcgccgtcggagcgccgccggacg 497

                                  
Query: 466 tcgagcccgccaacgtcgtcctg 488
           |||||||| || |||||||||||
Sbjct: 496 tcgagccccccgacgtcgtcctg 474

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>ref|XM_480999.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 939

 Score =  262 bits (132), Expect = 1e-66
 Identities = 300/356 (84%)
 Strand = Plus / Minus

                                                                       
Query: 133 ctgaagtgtgcgatctgtacgttttcgacgtccagctttttgaagttgctgttcttcctg 192
           ||||| || |||||||| | ||| || ||||||||||| ||||||| ||  |||||||||
Sbjct: 911 ctgaaatgcgcgatctggatgttgtccacgtccagcttcttgaagtcgccattcttcctg 852

                                                                       
Query: 193 gtgctgaagaagtggccccagttgtaggcgtcgtacctggcgggcctctcgtcgctcacc 252
           ||||||||||| | |||||||  |||||  | ||||||||| || ||||| || ||||| 
Sbjct: 851 gtgctgaagaattcgccccagcagtagggattgtacctggccgggctctcctcactcacg 792

                                                                       
Query: 253 atctcctccaacggctcgaccatggcgtcgctgccggggttgaagaagtagggcatggag 312
           ||||||||||| ||||| ||||||| || |||  | |||| ||||||| | |||||||||
Sbjct: 791 atctcctccaatggctccaccatggtgtagctcgccgggtagaagaagaatggcatggag 732

                                                                       
Query: 313 aacctctccttgtccgagttgacggacaccctgtgctcggcgctctcgtacctgtcgttg 372
           ||||||||||| |||  ||| |  | ||||| |||||| ||||||||||||||||| |||
Sbjct: 731 aacctctccttctccacgttcatcgccacccggtgctccgcgctctcgtacctgtcattg 672

                                                                       
Query: 373 ctccacacctggatgatgtcgccgacgttaatgacgtaggagtccgggacgggcctaacg 432
           |||||||||||||||||||||||||||||||||| | |||| |  ||||  ||||| |||
Sbjct: 671 ctccacacctggatgatgtcgccgacgttaatgatgaaggactgagggataggcctgacg 612

                                                                   
Query: 433 cgcacccactcgccgtcggagcggtggcggacgtcgagcccgccaacgtcgtcctg 488
           |||||||||||||||||| | ||| ||||||||||||| ||||| ||| |||||||
Sbjct: 611 cgcacccactcgccgtcgcatcggcggcggacgtcgaggccgccgacggcgtcctg 556

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>gb|AC107206.4| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete
             sequence
          Length = 154558

 Score =  218 bits (110), Expect = 1e-53
 Identities = 209/242 (86%)
 Strand = Plus / Plus

                                                                         
Query: 144   gatctgtacgttttcgacgtccagctttttgaagttgctgttcttcctggtgctgaagaa 203
             |||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 94441 gatctggacgttctccacgtccagcttcttgaagttgctgttcttcctggtgctgaagaa 94500

                                                                         
Query: 204   gtggccccagttgtaggcgtcgtacctggcgggcctctcgtcgctcaccatctcctccaa 263
              | |||||||||||||| || ||||||||| || |||||||||||||| | |||||||| 
Sbjct: 94501 ttcgccccagttgtaggggttgtacctggccgggctctcgtcgctcacgacctcctccag 94560

                                                                         
Query: 264   cggctcgaccatggcgtcgctgccggggttgaagaagtagggcatggagaacctctcctt 323
              ||||| ||||||| || ||   | |||||||||||| | || |||||||||||||||||
Sbjct: 94561 tggctccaccatggtgtggcccgccgggttgaagaagaaagggatggagaacctctcctt 94620

                                                                         
Query: 324   gtccgagttgacggacaccctgtgctcggcgctctcgtacctgtcgttgctccacacctg 383
              |||  ||| || | ||||| |||||| ||||||||||||||||| ||||||||||||||
Sbjct: 94621 ctccacgttcaccgccacccggtgctccgcgctctcgtacctgtcattgctccacacctg 94680

               
Query: 384   ga 385
             ||
Sbjct: 94681 ga 94682



 Score =  131 bits (66), Expect = 2e-27
 Identities = 99/110 (90%)
 Strand = Plus / Plus

                                                                         
Query: 379   acctggatgatgtcgccgacgttaatgacgtaggagtccgggacgggcctaacgcgcacc 438
             ||||||||||||||||||||||| |||| | ||||||  ||||||||||| |||||||||
Sbjct: 95247 acctggatgatgtcgccgacgttgatgatgaaggagtgagggacgggcctgacgcgcacc 95306

                                                               
Query: 439   cactcgccgtcggagcggtggcggacgtcgagcccgccaacgtcgtcctg 488
             |||||||||||||| ||| ||||||||||||| ||||| || ||||||||
Sbjct: 95307 cactcgccgtcggatcggcggcggacgtcgaggccgccgacatcgtcctg 95356

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  218 bits (110), Expect = 1e-53
 Identities = 209/242 (86%)
 Strand = Plus / Plus

                                                                            
Query: 144      gatctgtacgttttcgacgtccagctttttgaagttgctgttcttcctggtgctgaagaa 203
                |||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 23257960 gatctggacgttctccacgtccagcttcttgaagttgctgttcttcctggtgctgaagaa 23258019

                                                                            
Query: 204      gtggccccagttgtaggcgtcgtacctggcgggcctctcgtcgctcaccatctcctccaa 263
                 | |||||||||||||| || ||||||||| || |||||||||||||| | |||||||| 
Sbjct: 23258020 ttcgccccagttgtaggggttgtacctggccgggctctcgtcgctcacgacctcctccag 23258079

                                                                            
Query: 264      cggctcgaccatggcgtcgctgccggggttgaagaagtagggcatggagaacctctcctt 323
                 ||||| ||||||| || ||   | |||||||||||| | || |||||||||||||||||
Sbjct: 23258080 tggctccaccatggtgtggcccgccgggttgaagaagaaagggatggagaacctctcctt 23258139

                                                                            
Query: 324      gtccgagttgacggacaccctgtgctcggcgctctcgtacctgtcgttgctccacacctg 383
                 |||  ||| || | ||||| |||||| ||||||||||||||||| ||||||||||||||
Sbjct: 23258140 ctccacgttcaccgccacccggtgctccgcgctctcgtacctgtcattgctccacacctg 23258199

                  
Query: 384      ga 385
                ||
Sbjct: 23258200 ga 23258201



 Score =  131 bits (66), Expect = 2e-27
 Identities = 99/110 (90%)
 Strand = Plus / Plus

                                                                            
Query: 379      acctggatgatgtcgccgacgttaatgacgtaggagtccgggacgggcctaacgcgcacc 438
                ||||||||||||||||||||||| |||| | ||||||  ||||||||||| |||||||||
Sbjct: 23258766 acctggatgatgtcgccgacgttgatgatgaaggagtgagggacgggcctgacgcgcacc 23258825

                                                                  
Query: 439      cactcgccgtcggagcggtggcggacgtcgagcccgccaacgtcgtcctg 488
                |||||||||||||| ||| ||||||||||||| ||||| || ||||||||
Sbjct: 23258826 cactcgccgtcggatcggcggcggacgtcgaggccgccgacatcgtcctg 23258875

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  218 bits (110), Expect = 1e-53
 Identities = 209/242 (86%)
 Strand = Plus / Plus

                                                                            
Query: 144      gatctgtacgttttcgacgtccagctttttgaagttgctgttcttcctggtgctgaagaa 203
                |||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 23250988 gatctggacgttctccacgtccagcttcttgaagttgctgttcttcctggtgctgaagaa 23251047

                                                                            
Query: 204      gtggccccagttgtaggcgtcgtacctggcgggcctctcgtcgctcaccatctcctccaa 263
                 | |||||||||||||| || ||||||||| || |||||||||||||| | |||||||| 
Sbjct: 23251048 ttcgccccagttgtaggggttgtacctggccgggctctcgtcgctcacgacctcctccag 23251107

                                                                            
Query: 264      cggctcgaccatggcgtcgctgccggggttgaagaagtagggcatggagaacctctcctt 323
                 ||||| ||||||| || ||   | |||||||||||| | || |||||||||||||||||
Sbjct: 23251108 tggctccaccatggtgtggcccgccgggttgaagaagaaagggatggagaacctctcctt 23251167

                                                                            
Query: 324      gtccgagttgacggacaccctgtgctcggcgctctcgtacctgtcgttgctccacacctg 383
                 |||  ||| || | ||||| |||||| ||||||||||||||||| ||||||||||||||
Sbjct: 23251168 ctccacgttcaccgccacccggtgctccgcgctctcgtacctgtcattgctccacacctg 23251227

                  
Query: 384      ga 385
                ||
Sbjct: 23251228 ga 23251229



 Score =  131 bits (66), Expect = 2e-27
 Identities = 99/110 (90%)
 Strand = Plus / Plus

                                                                            
Query: 379      acctggatgatgtcgccgacgttaatgacgtaggagtccgggacgggcctaacgcgcacc 438
                ||||||||||||||||||||||| |||| | ||||||  ||||||||||| |||||||||
Sbjct: 23251794 acctggatgatgtcgccgacgttgatgatgaaggagtgagggacgggcctgacgcgcacc 23251853

                                                                  
Query: 439      cactcgccgtcggagcggtggcggacgtcgagcccgccaacgtcgtcctg 488
                |||||||||||||| ||| ||||||||||||| ||||| || ||||||||
Sbjct: 23251854 cactcgccgtcggatcggcggcggacgtcgaggccgccgacatcgtcctg 23251903

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  167 bits (84), Expect = 4e-38
 Identities = 210/252 (83%)
 Strand = Plus / Plus

                                                                           
Query: 133     ctgaagtgtgcgatctgtacgttttcgacgtccagctttttgaagttgctgttcttcctg 192
               ||||| || |||||||| | ||| || ||||||||||| ||||||| ||  |||||||||
Sbjct: 9159653 ctgaaatgcgcgatctggatgttgtccacgtccagcttcttgaagtcgccattcttcctg 9159712

                                                                           
Query: 193     gtgctgaagaagtggccccagttgtaggcgtcgtacctggcgggcctctcgtcgctcacc 252
               ||||||||||| | |||||||  |||||  | ||||||||| || ||||| || ||||| 
Sbjct: 9159713 gtgctgaagaattcgccccagcagtagggattgtacctggccgggctctcctcactcacg 9159772

                                                                           
Query: 253     atctcctccaacggctcgaccatggcgtcgctgccggggttgaagaagtagggcatggag 312
               ||||||||||| ||||| ||||||| || |||  | |||| ||||||| | |||||||||
Sbjct: 9159773 atctcctccaatggctccaccatggtgtagctcgccgggtagaagaagaatggcatggag 9159832

                                                                           
Query: 313     aacctctccttgtccgagttgacggacaccctgtgctcggcgctctcgtacctgtcgttg 372
               ||||||||||| |||  ||| |  | ||||| |||||| ||||||||||||||||| |||
Sbjct: 9159833 aacctctccttctccacgttcatcgccacccggtgctccgcgctctcgtacctgtcattg 9159892

                           
Query: 373     ctccacacctgg 384
               ||||||||||||
Sbjct: 9159893 ctccacacctgg 9159904



 Score =  107 bits (54), Expect = 3e-20
 Identities = 96/110 (87%)
 Strand = Plus / Plus

                                                                           
Query: 379     acctggatgatgtcgccgacgttaatgacgtaggagtccgggacgggcctaacgcgcacc 438
               |||||||||||||||||||||||||||| | |||| |  ||||  ||||| |||||||||
Sbjct: 9160264 acctggatgatgtcgccgacgttaatgatgaaggactgagggataggcctgacgcgcacc 9160323

                                                                 
Query: 439     cactcgccgtcggagcggtggcggacgtcgagcccgccaacgtcgtcctg 488
               |||||||||||| | ||| ||||||||||||| ||||| ||| |||||||
Sbjct: 9160324 cactcgccgtcgcatcggcggcggacgtcgaggccgccgacggcgtcctg 9160373

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>dbj|AP005799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0012K14
          Length = 155544

 Score =  167 bits (84), Expect = 4e-38
 Identities = 210/252 (83%)
 Strand = Plus / Plus

                                                                         
Query: 133   ctgaagtgtgcgatctgtacgttttcgacgtccagctttttgaagttgctgttcttcctg 192
             ||||| || |||||||| | ||| || ||||||||||| ||||||| ||  |||||||||
Sbjct: 95147 ctgaaatgcgcgatctggatgttgtccacgtccagcttcttgaagtcgccattcttcctg 95206

                                                                         
Query: 193   gtgctgaagaagtggccccagttgtaggcgtcgtacctggcgggcctctcgtcgctcacc 252
             ||||||||||| | |||||||  |||||  | ||||||||| || ||||| || ||||| 
Sbjct: 95207 gtgctgaagaattcgccccagcagtagggattgtacctggccgggctctcctcactcacg 95266

                                                                         
Query: 253   atctcctccaacggctcgaccatggcgtcgctgccggggttgaagaagtagggcatggag 312
             ||||||||||| ||||| ||||||| || |||  | |||| ||||||| | |||||||||
Sbjct: 95267 atctcctccaatggctccaccatggtgtagctcgccgggtagaagaagaatggcatggag 95326

                                                                         
Query: 313   aacctctccttgtccgagttgacggacaccctgtgctcggcgctctcgtacctgtcgttg 372
             ||||||||||| |||  ||| |  | ||||| |||||| ||||||||||||||||| |||
Sbjct: 95327 aacctctccttctccacgttcatcgccacccggtgctccgcgctctcgtacctgtcattg 95386

                         
Query: 373   ctccacacctgg 384
             ||||||||||||
Sbjct: 95387 ctccacacctgg 95398



 Score =  107 bits (54), Expect = 3e-20
 Identities = 96/110 (87%)
 Strand = Plus / Plus

                                                                         
Query: 379   acctggatgatgtcgccgacgttaatgacgtaggagtccgggacgggcctaacgcgcacc 438
             |||||||||||||||||||||||||||| | |||| |  ||||  ||||| |||||||||
Sbjct: 95758 acctggatgatgtcgccgacgttaatgatgaaggactgagggataggcctgacgcgcacc 95817

                                                               
Query: 439   cactcgccgtcggagcggtggcggacgtcgagcccgccaacgtcgtcctg 488
             |||||||||||| | ||| ||||||||||||| ||||| ||| |||||||
Sbjct: 95818 cactcgccgtcgcatcggcggcggacgtcgaggccgccgacggcgtcctg 95867

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>dbj|AK059045.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-D08, full
           insert sequence
          Length = 1741

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                        
Query: 339 caccctgtgctcggcgctctcgtacctgtcgttgctccacacctg 383
           ||||||||||||  |||||| |||||||| |||||||||| ||||
Sbjct: 989 caccctgtgctccacgctcttgtacctgttgttgctccacgcctg 945

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                        
Query: 339      caccctgtgctcggcgctctcgtacctgtcgttgctccac 378
                ||||||||||||  |||||| |||||||| ||||||||||
Sbjct: 25218445 caccctgtgctccacgctcttgtacctgttgttgctccac 25218484

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>dbj|AP006168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1469H02
          Length = 136602

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                      
Query: 339    caccctgtgctcggcgctctcgtacctgtcgttgctccac 378
              ||||||||||||  |||||| |||||||| ||||||||||
Sbjct: 118838 caccctgtgctccacgctcttgtacctgttgttgctccac 118877

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>dbj|AK072410.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083A20, full
            insert sequence
          Length = 2655

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 339  caccctgtgctcggcgctctcgtacctgtcgttgctccac 378
            ||||||||||||  |||||| |||||||| ||||||||||
Sbjct: 2208 caccctgtgctccacgctcttgtacctgttgttgctccac 2169

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>ref|XM_476364.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1077

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                       
Query: 339 caccctgtgctcggcgctctcgtacctgtcgttgctccacacctggatgatgtcgccgac 398
           ||||||||||||  |||||| ||||   |||||||||||| |||| | || |||||||||
Sbjct: 221 caccctgtgctccacgctcttgtacacatcgttgctccacgcctgcaggaggtcgccgac 280

              
Query: 399 gtt 401
           |||
Sbjct: 281 gtt 283

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>ref|NM_194218.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1729

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 339  caccctgtgctcggcgctctcgtacctgtcgttgctccacacctggatgatgtcgccgac 398
            ||||||||||||  |||||| ||||   |||||||||||| |||| | || |||||||||
Sbjct: 1218 caccctgtgctccacgctcttgtacacatcgttgctccacgcctgcaggaggtcgccgac 1159

               
Query: 399  gtt 401
            |||
Sbjct: 1158 gtt 1156

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                          
Query: 339    caccctgtgctcggcgctctcgtacctgtcgttgctccacacctggatgatgtcgccgac 398
              ||||||||||||  |||||| ||||   |||||||||||| |||| | || |||||||||
Sbjct: 218032 caccctgtgctccacgctcttgtacacatcgttgctccacgcctgcaggaggtcgccgac 217973

                 
Query: 399    gtt 401
              |||
Sbjct: 217972 gtt 217970

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>dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0446F04
          Length = 175390

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                         
Query: 339   caccctgtgctcggcgctctcgtacctgtcgttgctccacacctggatgatgtcgccgac 398
             ||||||||||||  |||||| ||||   |||||||||||| |||| | || |||||||||
Sbjct: 52896 caccctgtgctccacgctcttgtacacatcgttgctccacgcctgcaggaggtcgccgac 52837

                
Query: 399   gtt 401
             |||
Sbjct: 52836 gtt 52834

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>dbj|AK109056.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-E10, full
           insert sequence
          Length = 1076

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                       
Query: 339 caccctgtgctcggcgctctcgtacctgtcgttgctccacacctggatgatgtcgccgac 398
           ||||||||||||  |||||| ||||   |||||||||||| |||| | || |||||||||
Sbjct: 221 caccctgtgctccacgctcttgtacacatcgttgctccacgcctgcaggaggtcgccgac 280

              
Query: 399 gtt 401
           |||
Sbjct: 281 gtt 283

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 264      cggctcgaccatggcgtcgctg 285
                ||||||||||||||||||||||
Sbjct: 14402714 cggctcgaccatggcgtcgctg 14402693



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 375     ccacacctggatgatgtcgc 394
               ||||||||||||||||||||
Sbjct: 8465466 ccacacctggatgatgtcgc 8465485

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>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0465E03
          Length = 151206

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 264   cggctcgaccatggcgtcgctg 285
             ||||||||||||||||||||||
Sbjct: 94517 cggctcgaccatggcgtcgctg 94496

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>dbj|AP005683.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OJ1585_D02
          Length = 103172

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 264  cggctcgaccatggcgtcgctg 285
            ||||||||||||||||||||||
Sbjct: 2279 cggctcgaccatggcgtcgctg 2258

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>dbj|AK060606.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-B10, full
           insert sequence
          Length = 1752

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 264 cggctcgaccatggcgtcgctg 285
           ||||||||||||||||||||||
Sbjct: 91  cggctcgaccatggcgtcgctg 112

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>gb|DP000063.1| Oryctolagus cuniculus target 117 genomic scaffold
          Length = 489372

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 169    tttttgaagttgctgttcttc 189
              |||||||||||||||||||||
Sbjct: 461046 tttttgaagttgctgttcttc 461026

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>gb|AC026398.5| Homo sapiens chromosome 5 clone CTB-127M13, complete sequence
          Length = 88783

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 169   tttttgaagttgctgttcttc 189
             |||||||||||||||||||||
Sbjct: 44642 tttttgaagttgctgttcttc 44662

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>gb|AF038840.1|AF038840 Dendrobium crumenatum 1-aminocyclopropane-1-carboxylate oxidase
           mRNA, complete cds
          Length = 1544

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 276 ggcgtcgctgccggggttgaagaag 300
           ||||||||||||||||||| |||||
Sbjct: 944 ggcgtcgctgccggggttgtagaag 920

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>gb|AY598795.1| Laelia anceps 1-aminocyclopropane-1-carboxylate oxidase mRNA,
           complete cds
          Length = 1050

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 276 ggcgtcgctgccggggttgaagaa 299
           ||||||||||||||||||| ||||
Sbjct: 732 ggcgtcgctgccggggttgtagaa 709

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>gb|AY598794.1| Cattleya intermedia 1-aminocyclopropane-1-carboxylate oxidase mRNA,
           complete cds
          Length = 1024

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 276 ggcgtcgctgccggggttgaagaa 299
           ||||||||||||||||||| ||||
Sbjct: 731 ggcgtcgctgccggggttgtagaa 708

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>gb|AY598793.1| Cattleya bicolor 1-aminocyclopropane-1-carboxylate oxidase mRNA,
           complete cds
          Length = 1300

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 276 ggcgtcgctgccggggttgaagaa 299
           ||||||||||||||||||| ||||
Sbjct: 997 ggcgtcgctgccggggttgtagaa 974

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>emb|AL589703.6| Human DNA sequence from clone RP11-127L21 on chromosome 9 Contains a
            novel gene and a pseudogene similar to part of tubulin
            beta chain, complete sequence
          Length = 48697

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 171  tttgaagttgctgttcttcc 190
            ||||||||||||||||||||
Sbjct: 3732 tttgaagttgctgttcttcc 3751

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>gb|AC026226.9| Homo sapiens chromosome 10 clone RP11-81B10, complete sequence
          Length = 158556

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   tttttgaagttgctgttctt 188
             ||||||||||||||||||||
Sbjct: 91702 tttttgaagttgctgttctt 91683

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>gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 genomic sequence, complete
             sequence
          Length = 152172

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    gtagtactattacaaatggt 67
             ||||||||||||||||||||
Sbjct: 61789 gtagtactattacaaatggt 61808

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>gb|AC004561.3| Arabidopsis thaliana chromosome 2 clone F16P2 map ve014, complete
             sequence
          Length = 131743

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    cataaggttggaattaatac 32
             ||||||||||||||||||||
Sbjct: 85519 cataaggttggaattaatac 85500

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>gb|AC016343.5| Homo sapiens chromosome 15, clone RP11-142M4, complete sequence
          Length = 177386

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   tttttgaagttgctgttctt 188
             ||||||||||||||||||||
Sbjct: 29399 tttttgaagttgctgttctt 29418

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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 264     cggctcgaccatggcgtcgc 283
               ||||||||||||||||||||
Sbjct: 1716746 cggctcgaccatggcgtcgc 1716765

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>dbj|AK045273.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length
           enriched library, clone:B130054L12
           product:unclassifiable, full insert sequence
          Length = 3126

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 179 tgctgttcttcctggtgctg 198
           ||||||||||||||||||||
Sbjct: 825 tgctgttcttcctggtgctg 844

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 48       gtagtactattacaaatggt 67
                ||||||||||||||||||||
Sbjct: 19314592 gtagtactattacaaatggt 19314573

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 434     gcacccactcgccgtcggag 453
               ||||||||||||||||||||
Sbjct: 7055756 gcacccactcgccgtcggag 7055775

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>gb|AC003981.2|AC003981 Genomic sequence for Arabidopsis thaliana BAC F22O13 from chromosome I,
             complete sequence
          Length = 133843

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    cataaggttggaattaatac 32
             ||||||||||||||||||||
Sbjct: 94416 cataaggttggaattaatac 94435

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>gb|AC051643.5| Homo sapiens chromosome 15, clone RP11-615L8, complete sequence
          Length = 158682

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 169    tttttgaagttgctgttctt 188
              ||||||||||||||||||||
Sbjct: 134423 tttttgaagttgctgttctt 134442

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>gb|AC012190.3|T22I11 Arabidopsis thaliana chromosome 1 BAC T22I11 sequence, complete
             sequence
          Length = 68986

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    cataaggttggaattaatac 32
             ||||||||||||||||||||
Sbjct: 59525 cataaggttggaattaatac 59544

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>gb|AC007887.9|AC007887 Genomic sequence for Arabidopsis thaliana BAC F15O4 from chromosome I,
             complete sequence
          Length = 158096

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    cataaggttggaattaatac 32
             ||||||||||||||||||||
Sbjct: 31351 cataaggttggaattaatac 31332

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>dbj|AP005170.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0080E19
          Length = 152755

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 434   gcacccactcgccgtcggag 453
             ||||||||||||||||||||
Sbjct: 76543 gcacccactcgccgtcggag 76562

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>dbj|AP004785.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBb0061B07
          Length = 124766

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 434    gcacccactcgccgtcggag 453
              ||||||||||||||||||||
Sbjct: 115183 gcacccactcgccgtcggag 115202

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>dbj|AP005926.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0054E15
          Length = 142898

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 375   ccacacctggatgatgtcgc 394
             ||||||||||||||||||||
Sbjct: 90815 ccacacctggatgatgtcgc 90834

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>emb|AL928908.16| Zebrafish DNA sequence from clone DKEY-221L4 in linkage group 17,
             complete sequence
          Length = 229790

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   agttgctgttcttcctggtg 195
             ||||||||||||||||||||
Sbjct: 20937 agttgctgttcttcctggtg 20956

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>gb|AE005109.1| Halobacterium sp. NRC-1 section 140 of 170 of the complete genome
          Length = 12026

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 264  cggctcgaccatggcgtcgctgcc 287
            |||| |||||||||||||||||||
Sbjct: 4039 cggcgcgaccatggcgtcgctgcc 4016

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>dbj|AB010693.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21C13
          Length = 75709

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    cataaggttggaattaatac 32
             ||||||||||||||||||||
Sbjct: 24037 cataaggttggaattaatac 24056

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>dbj|AB028611.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MFE16
          Length = 82646

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    cataaggttggaattaatac 32
             ||||||||||||||||||||
Sbjct: 24542 cataaggttggaattaatac 24561

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 48       gtagtactattacaaatggt 67
                ||||||||||||||||||||
Sbjct: 19325868 gtagtactattacaaatggt 19325849

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>emb|AL606908.10| Mouse DNA sequence from clone RP23-273D6 on chromosome 4, complete
              sequence
          Length = 212360

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    tgctgttcttcctggtgctg 198
              ||||||||||||||||||||
Sbjct: 132693 tgctgttcttcctggtgctg 132674


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,408,180
Number of Sequences: 3902068
Number of extensions: 3408180
Number of successful extensions: 66217
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65843
Number of HSP's gapped (non-prelim): 366
length of query: 488
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 466
effective length of database: 17,147,199,772
effective search space: 7990595093752
effective search space used: 7990595093752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result