ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart11a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ICAM2_HUMAN (P13598) Intercellular adhesion molecule 2 precursor... 29 5.2
2FTHS_ENTFA (Q834D6) Formate--tetrahydrofolate ligase (EC 6.3.4.3... 28 8.9

>ICAM2_HUMAN (P13598) Intercellular adhesion molecule 2 precursor (ICAM-2)|
           (CD102 antigen)
          Length = 275

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = -2

Query: 266 STTCLTGS-GKRSEFLSVLLVSQEAAWKRYCP---SYDAIFVCK*YCQRKTEFISSSL 105
           STTC     G     L+ +L+ ++A WK Y     S+D +  C   C  K E ++S++
Sbjct: 49  STTCNQPEVGGLETSLNKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNV 106



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>FTHS_ENTFA (Q834D6) Formate--tetrahydrofolate ligase (EC 6.3.4.3)|
           (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
          Length = 556

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -1

Query: 405 EKLVQKQQYFQNLSKHIHLKGRYDAVISVAI 313
           E L   Q+ F NL KHI    RYD  + VAI
Sbjct: 348 ENLPALQKGFANLEKHIQNMQRYDVPVVVAI 378


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,142,553
Number of Sequences: 219361
Number of extensions: 1358520
Number of successful extensions: 3333
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3333
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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