Clone Information

BLAST Search Result

Clone Name	rbart11a01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	STA5A_SHEEP (P42231) Signal transducer and activator of transcri...	30	4.7
2	CBIO1_MYCMS (Q6MSQ2) Cobalt import ATP-binding protein cbiO 1	29	6.2
3	CCPR_YARLI (Q6C0Z6) Cytochrome c peroxidase, mitochondrial precu...	29	8.1

>STA5A_SHEEP (P42231) Signal transducer and activator of transcription 5A|
           (Mammary gland factor)
          Length = 794

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 144 RTVQLIHTNQT*ILCSPPISWNQSHTWSLLEQTRRS 251
           +T+QL+   QT IL    I W + H W  +E   RS
Sbjct: 236 KTLQLLRKQQTIILDDELIQWKRRHDWRGMEAPPRS 271

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>CBIO1_MYCMS (Q6MSQ2) Cobalt import ATP-binding protein cbiO 1|
          Length = 303

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -3

Query: 240 FVPRETTCVIGSTRSGVST--EFTSGLCVS 157
           F   + TCVIG+T SG ST  + T+GL +S
Sbjct: 48  FKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 77

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>CCPR_YARLI (Q6C0Z6) Cytochrome c peroxidase, mitochondrial precursor (EC|
           1.11.1.5) (CCP)
          Length = 340

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 194 PDLVEPITHVVSLGTNQTFNNQQHVALYGTRLL 292
           PD  +  THV ++   Q FN+Q+ VAL G   L
Sbjct: 194 PDASQGATHVRNVFNRQGFNDQEMVALIGAHAL 226


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,773,396
Number of Sequences: 219361
Number of extensions: 960788
Number of successful extensions: 2412
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2412
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result