ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart11a01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473298.1| Oryza sativa (japonica cultivar-group), predic... 167 4e-38
2emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromosome 4,... 167 4e-38
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 167 4e-38
4dbj|AK069219.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 4e-38
5dbj|AK061426.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 4e-38
6gb|AY110878.1| Zea mays CL16535_1 mRNA sequence 121 2e-24
7ref|NM_197235.1| Oryza sativa (japonica cultivar-group) putative... 50 0.007
8gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome... 50 0.007
9gb|AC011676.10| Homo sapiens chromosome , clone RP11-10J21, comp... 50 0.007
10gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 geno... 50 0.007
11dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
12dbj|AK111107.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
13gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 50 0.007
14ref|XM_479649.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.11
15ref|XM_507416.1| PREDICTED Oryza sativa (japonica cultivar-group... 46 0.11
16ref|XM_506615.2| PREDICTED Oryza sativa (japonica cultivar-group... 46 0.11
17dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
18dbj|AP004654.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
19dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
20dbj|AK104211.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.11
21dbj|AK070102.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.11
22dbj|AK061172.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.11
23gb|DQ124078.1| Coffea arabica clone MN-SSH1-D12 mRNA sequence 44 0.43
24gb|U39743.2| Caenorhabditis elegans cosmid R173, complete sequence 42 1.7
25gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.7
26dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
27dbj|AK072326.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
28gb|AC169088.2| Gallus gallus BAC clone CH261-100B3 from chromoso... 42 1.7
29gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
30emb|AL772419.4|CNS08C9X Oryza sativa chromosome 12, . BAC OJ1115... 42 1.7
31gb|AF268389.1| Salmonella enteritidis plasmid pJ Rep (rep) gene,... 40 6.8
32gb|AC145510.2| Gasterosteus aculeatus clone CH213-60G7, complete... 40 6.8
33ref|XM_765795.1| Giardia lamblia ATCC 50803 hypothetical protein... 40 6.8
34ref|XM_765796.1| Giardia lamblia ATCC 50803 phosphate dikinase (... 40 6.8
35gb|AC145764.2| Gasterosteus aculeatus clone CH213-118A19, comple... 40 6.8
36emb|Z54168.1|GDPPDKGN G.duodenalis gene for pyruvate phosphate d... 40 6.8
37gb|CP000088.1| Thermobifida fusca YX, complete genome 40 6.8
38emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 6.8
39emb|AL929354.1|PFA929354 Plasmodium falciparum strain 3D7, chrom... 40 6.8
40emb|AJ278573.1|SNA278573 Streptomyces natalensis pimaricin biosy... 40 6.8
41emb|AJ132222.1|SNA132222 Streptomyces natalensis pimS1 gene 40 6.8
42emb|AL663054.9| Mouse DNA sequence from clone RP23-480G5 on chro... 40 6.8
43dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 6.8
44gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome 40 6.8
45gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 6.8
46dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.8
47emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 40 6.8
48emb|AL929464.9| Zebrafish DNA sequence from clone CH211-255L14 i... 40 6.8
49gb|AC026351.29| Homo sapiens 12 BAC RP11-176O5 (Roswell Park Can... 40 6.8
50gb|BC083571.1| Rattus norvegicus progesterone receptor membrane ... 40 6.8
51dbj|AK115640.1| Ciona intestinalis cDNA, clone:cilv010n11, full ... 40 6.8
52gb|U43531.1|GLU43531 Giardia intestinalis pyruvate,phosphate dik... 40 6.8
53emb|Z25819.1|PRSSRRNA P.reichenowi small subunit rRNA (from A-ty... 40 6.8
54ref|NM_001008374.1| Rattus norvegicus progesterone receptor memb... 40 6.8
55gb|M19172.1|PFARGEA P.falciparum 18S ribosomal RNA in asexual pa... 40 6.8 
>ref|XM_473298.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 711

 Score =  167 bits (84), Expect = 4e-38
 Identities = 135/152 (88%)
 Strand = Plus / Minus

                                                                       
Query: 348 gcgacggcagcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttg 407
           |||||||| || ||||| |||||||||||||  ||| | ||||| ||  |||||||||| 
Sbjct: 659 gcgacggcggccacgacgacggcggcgccgaacagcgcgacgaccagccccgtgaagttc 600

                                                                       
Query: 408 accaggagcgcctccgggccgtacttgtcgagcccggagctctgcaggaaggtcatcttc 467
           ||||||| |||||||| ||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct: 599 accaggaacgcctccgcgccgtacttgtcgaggccggagctctggaggaaggtcagcttc 540

                                           
Query: 468 tccaggaacccgagctccgccgtcgccagcgt 499
           ||||||| ||||||||||||||||||||||||
Sbjct: 539 tccaggagcccgagctccgccgtcgccagcgt 508
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>emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24,
             complete sequence
          Length = 121056

 Score =  167 bits (84), Expect = 4e-38
 Identities = 135/152 (88%)
 Strand = Plus / Plus

                                                                         
Query: 348   gcgacggcagcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttg 407
             |||||||| || ||||| |||||||||||||  ||| | ||||| ||  |||||||||| 
Sbjct: 87576 gcgacggcggccacgacgacggcggcgccgaacagcgcgacgaccagccccgtgaagttc 87635

                                                                         
Query: 408   accaggagcgcctccgggccgtacttgtcgagcccggagctctgcaggaaggtcatcttc 467
             ||||||| |||||||| ||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct: 87636 accaggaacgcctccgcgccgtacttgtcgaggccggagctctggaggaaggtcagcttc 87695

                                             
Query: 468   tccaggaacccgagctccgccgtcgccagcgt 499
             ||||||| ||||||||||||||||||||||||
Sbjct: 87696 tccaggagcccgagctccgccgtcgccagcgt 87727
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  167 bits (84), Expect = 4e-38
 Identities = 135/152 (88%)
 Strand = Plus / Plus

                                                                            
Query: 348      gcgacggcagcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttg 407
                |||||||| || ||||| |||||||||||||  ||| | ||||| ||  |||||||||| 
Sbjct: 26648018 gcgacggcggccacgacgacggcggcgccgaacagcgcgacgaccagccccgtgaagttc 26648077

                                                                            
Query: 408      accaggagcgcctccgggccgtacttgtcgagcccggagctctgcaggaaggtcatcttc 467
                ||||||| |||||||| ||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct: 26648078 accaggaacgcctccgcgccgtacttgtcgaggccggagctctggaggaaggtcagcttc 26648137

                                                
Query: 468      tccaggaacccgagctccgccgtcgccagcgt 499
                ||||||| ||||||||||||||||||||||||
Sbjct: 26648138 tccaggagcccgagctccgccgtcgccagcgt 26648169
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>dbj|AK069219.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012J01, full
           insert sequence
          Length = 1046

 Score =  167 bits (84), Expect = 4e-38
 Identities = 135/152 (88%)
 Strand = Plus / Minus

                                                                       
Query: 348 gcgacggcagcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttg 407
           |||||||| || ||||| |||||||||||||  ||| | ||||| ||  |||||||||| 
Sbjct: 842 gcgacggcggccacgacgacggcggcgccgaacagcgcgacgaccagccccgtgaagttc 783

                                                                       
Query: 408 accaggagcgcctccgggccgtacttgtcgagcccggagctctgcaggaaggtcatcttc 467
           ||||||| |||||||| ||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct: 782 accaggaacgcctccgcgccgtacttgtcgaggccggagctctggaggaaggtcagcttc 723

                                           
Query: 468 tccaggaacccgagctccgccgtcgccagcgt 499
           ||||||| ||||||||||||||||||||||||
Sbjct: 722 tccaggagcccgagctccgccgtcgccagcgt 691
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>dbj|AK061426.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-G12, full
           insert sequence
          Length = 1078

 Score =  167 bits (84), Expect = 4e-38
 Identities = 135/152 (88%)
 Strand = Plus / Minus

                                                                       
Query: 348 gcgacggcagcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttg 407
           |||||||| || ||||| |||||||||||||  ||| | ||||| ||  |||||||||| 
Sbjct: 840 gcgacggcggccacgacgacggcggcgccgaacagcgcgacgaccagccccgtgaagttc 781

                                                                       
Query: 408 accaggagcgcctccgggccgtacttgtcgagcccggagctctgcaggaaggtcatcttc 467
           ||||||| |||||||| ||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct: 780 accaggaacgcctccgcgccgtacttgtcgaggccggagctctggaggaaggtcagcttc 721

                                           
Query: 468 tccaggaacccgagctccgccgtcgccagcgt 499
           ||||||| ||||||||||||||||||||||||
Sbjct: 720 tccaggagcccgagctccgccgtcgccagcgt 689
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>gb|AY110878.1| Zea mays CL16535_1 mRNA sequence
          Length = 1068

 Score =  121 bits (61), Expect = 2e-24
 Identities = 91/103 (88%)
 Strand = Plus / Minus

                                                                       
Query: 396 gccgtgaagttgaccaggagcgcctccgggccgtacttgtcgagcccggagctctgcagg 455
           ||||||||||||||||||| |||||| | |||||||||||||||      ||||| ||||
Sbjct: 801 gccgtgaagttgaccaggaacgcctcggcgccgtacttgtcgagnnnnnngctctccagg 742

                                                      
Query: 456 aaggtcatcttctccaggaacccgagctccgccgtcgccagcg 498
           ||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 741 aaggtcagcttctccaggaacccgagctccgcggtcgccagcg 699
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>ref|NM_197235.1| Oryza sativa (japonica cultivar-group) putative cytochrome b-561
           (OSJNBb0073N24.15), mRNA
          Length = 693

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 453 aggaaggtcatcttctccaggaacccgagctccgccg 489
           |||||||| | ||||||||||||||| ||||||||||
Sbjct: 536 aggaaggtgagcttctccaggaaccccagctccgccg 500
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>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0062C05 map S21174S, complete sequence
          Length = 178867

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 453   aggaaggtcatcttctccaggaacccgagctccgccg 489
             |||||||| | ||||||||||||||| ||||||||||
Sbjct: 34668 aggaaggtgagcttctccaggaaccccagctccgccg 34704
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>gb|AC011676.10| Homo sapiens chromosome , clone RP11-10J21, complete sequence
          Length = 197630

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 451    gcaggaaggtcatcttctccaggaa 475
              |||||||||||||||||||||||||
Sbjct: 135415 gcaggaaggtcatcttctccaggaa 135391
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>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete
              sequence
          Length = 130058

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                   
Query: 453    aggaaggtcatcttctccaggaacccgagctccgccg 489
              |||||||| | ||||||||||||||| ||||||||||
Sbjct: 100526 aggaaggtgagcttctccaggaaccccagctccgccg 100562
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                     
Query: 453      aggaaggtcatcttctccaggaacccgagctccgccg 489
                |||||||| | ||||||||||||||| ||||||||||
Sbjct: 18739248 aggaaggtgagcttctccaggaaccccagctccgccg 18739284
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>dbj|AK111107.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-A03, full
           insert sequence
          Length = 946

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 453 aggaaggtcatcttctccaggaacccgagctccgccg 489
           |||||||| | ||||||||||||||| ||||||||||
Sbjct: 615 aggaaggtgagcttctccaggaaccccagctccgccg 579
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                     
Query: 453      aggaaggtcatcttctccaggaacccgagctccgccg 489
                |||||||| | ||||||||||||||| ||||||||||
Sbjct: 18750101 aggaaggtgagcttctccaggaaccccagctccgccg 18750137
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>ref|XM_479649.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 968

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 357 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 416
           |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 743 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 684

                  
Query: 417 gcctccg 423
           |||||||
Sbjct: 683 gcctccg 677
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>ref|XM_507416.1| PREDICTED Oryza sativa (japonica cultivar-group), B1147B12.18 mRNA
          Length = 1107

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 357 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 416
           |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 753 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 694

                  
Query: 417 gcctccg 423
           |||||||
Sbjct: 693 gcctccg 687
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>ref|XM_506615.2| PREDICTED Oryza sativa (japonica cultivar-group), B1147B12.18 mRNA
          Length = 1158

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 357 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 416
           |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 749 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 690

                  
Query: 417 gcctccg 423
           |||||||
Sbjct: 689 gcctccg 683
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
             complete sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                         
Query: 357   gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 416
             |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 89838 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 89897

                    
Query: 417   gcctccg 423
             |||||||
Sbjct: 89898 gcctccg 89904
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>dbj|AP004654.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0015C07
          Length = 149079

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                        
Query: 357  gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 416
            |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 5173 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 5232

                   
Query: 417  gcctccg 423
            |||||||
Sbjct: 5233 gcctccg 5239
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>dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1147B12
          Length = 127902

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                         
Query: 357   gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 416
             |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 89838 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 89897

                    
Query: 417   gcctccg 423
             |||||||
Sbjct: 89898 gcctccg 89904
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>dbj|AK104211.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-D02, full
           insert sequence
          Length = 1107

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 357 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 416
           |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 753 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 694

                  
Query: 417 gcctccg 423
           |||||||
Sbjct: 693 gcctccg 687
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>dbj|AK070102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047K10, full
           insert sequence
          Length = 968

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 357 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 416
           |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 743 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 684

                  
Query: 417 gcctccg 423
           |||||||
Sbjct: 683 gcctccg 677
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>dbj|AK061172.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-B08, full
           insert sequence
          Length = 1160

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 357 gcgacgaccacggcggcgccgaggagcaccacgacgagggccgtgaagttgaccaggagc 416
           |||| ||| |||||| |||||||||| |  || || || |||||||||||||| || |||
Sbjct: 749 gcgaggacgacggcgacgccgaggaggaggaccaccagcgccgtgaagttgacgagtagc 690

                  
Query: 417 gcctccg 423
           |||||||
Sbjct: 689 gcctccg 683
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>gb|DQ124078.1| Coffea arabica clone MN-SSH1-D12 mRNA sequence
          Length = 227

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 393 agggccgtgaagttgaccagga 414
           ||||||||||||||||||||||
Sbjct: 144 agggccgtgaagttgaccagga 165
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>gb|U39743.2| Caenorhabditis elegans cosmid R173, complete sequence
          Length = 34861

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 121  agtgcagttttcagtaatcaa 141
            |||||||||||||||||||||
Sbjct: 6299 agtgcagttttcagtaatcaa 6319
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 358     cgacgaccacggcggcgccga 378
               |||||||||||||||||||||
Sbjct: 3806661 cgacgaccacggcggcgccga 3806641
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 357      gcgacgaccacggcggcgccg 377
                |||||||||||||||||||||
Sbjct: 10623378 gcgacgaccacggcggcgccg 10623398
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>dbj|AK072326.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026M23, full
           insert sequence
          Length = 3395

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 357 gcgacgaccacggcggcgccg 377
           |||||||||||||||||||||
Sbjct: 322 gcgacgaccacggcggcgccg 342
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>gb|AC169088.2| Gallus gallus BAC clone CH261-100B3 from chromosome ul, complete sequence
          Length = 214859

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 438    agcccggagctctgcaggaag 458
              |||||||||||||||||||||
Sbjct: 103661 agcccggagctctgcaggaag 103681
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 357      gcgacgaccacggcggcgccg 377
                |||||||||||||||||||||
Sbjct: 10623260 gcgacgaccacggcggcgccg 10623280
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>emb|AL772419.4|CNS08C9X Oryza sativa chromosome 12, . BAC OJ1115_G02 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 112916

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 357   gcgacgaccacggcggcgccg 377
             |||||||||||||||||||||
Sbjct: 86681 gcgacgaccacggcggcgccg 86701
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>gb|AF268389.1| Salmonella enteritidis plasmid pJ Rep (rep) gene, complete cds
          Length = 2096

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 340 ccgcgggagcgacggcagcg 359
           ||||||||||||||||||||
Sbjct: 567 ccgcgggagcgacggcagcg 586
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>gb|AC145510.2| Gasterosteus aculeatus clone CH213-60G7, complete sequence
          Length = 183847

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 476    cccgagctccgccgtcgccagcgt 499
              ||||||||||||| ||||||||||
Sbjct: 177195 cccgagctccgccttcgccagcgt 177172
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>ref|XM_765795.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_56_51041_50559) partial mRNA
          Length = 483

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 442 cggagctctgcaggaaggtc 461
           ||||||||||||||||||||
Sbjct: 268 cggagctctgcaggaaggtc 249
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>ref|XM_765796.1| Giardia lamblia ATCC 50803 phosphate dikinase (GLP_56_50716_53370)
           partial mRNA
          Length = 2655

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 442 cggagctctgcaggaaggtc 461
           ||||||||||||||||||||
Sbjct: 59  cggagctctgcaggaaggtc 78
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>gb|AC145764.2| Gasterosteus aculeatus clone CH213-118A19, complete sequence
          Length = 192556

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 476    cccgagctccgccgtcgccagcgt 499
              ||||||||||||| ||||||||||
Sbjct: 110030 cccgagctccgccttcgccagcgt 110053
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>emb|Z54168.1|GDPPDKGN G.duodenalis gene for pyruvate phosphate dikinase
          Length = 4212

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 442  cggagctctgcaggaaggtc 461
            ||||||||||||||||||||
Sbjct: 1209 cggagctctgcaggaaggtc 1228
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 376     cgaggagcaccacgacgagg 395
               ||||||||||||||||||||
Sbjct: 1219685 cgaggagcaccacgacgagg 1219666
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 360     acgaccacggcggcgccgag 379
               ||||||||||||||||||||
Sbjct: 2117350 acgaccacggcggcgccgag 2117331
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>emb|AL929354.1|PFA929354 Plasmodium falciparum strain 3D7, chromosome 5, segment 4/4
          Length = 340552

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 18     tatttgtatctttgatgctt 37
              ||||||||||||||||||||
Sbjct: 288346 tatttgtatctttgatgctt 288365
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>emb|AJ278573.1|SNA278573 Streptomyces natalensis pimaricin biosynthetic gene cluster
          Length = 84985

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 409   ccaggagcgcctccgggccg 428
             ||||||||||||||||||||
Sbjct: 60989 ccaggagcgcctccgggccg 61008
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>emb|AJ132222.1|SNA132222 Streptomyces natalensis pimS1 gene
          Length = 20394

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 409   ccaggagcgcctccgggccg 428
             ||||||||||||||||||||
Sbjct: 20164 ccaggagcgcctccgggccg 20145
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>emb|AL663054.9| Mouse DNA sequence from clone RP23-480G5 on chromosome 11 Contains the
             5' end of the Myo1d gene for myosin ID, a novel gene and a
             mitochondrial ribosomal protein L27 (Mrpl27) pseudogene,
             complete sequence
          Length = 82452

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    atcactgtatttgtatcttt 30
             ||||||||||||||||||||
Sbjct: 63974 atcactgtatttgtatcttt 63993
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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 356     agcgacgaccacggcggcgc 375
               ||||||||||||||||||||
Sbjct: 3028884 agcgacgaccacggcggcgc 3028903
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>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 358     cgacgaccacggcggcgccg 377
               ||||||||||||||||||||
Sbjct: 2489130 cgacgaccacggcggcgccg 2489111
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 361    cgaccacggcggcgccgagg 380
              ||||||||||||||||||||
Sbjct: 462681 cgaccacggcggcgccgagg 462662
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 358     cgacgaccacggcggcgccgaggagcac 385
               ||||||||||||||| ||||||| ||||
Sbjct: 1127665 cgacgaccacggcggagccgaggggcac 1127638
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>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib
          Length = 2013089

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 476     cccgagctccgccgtcgccagcgt 499
               |||||||||||| |||||||||||
Sbjct: 1568981 cccgagctccgctgtcgccagcgt 1568958
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>emb|AL929464.9| Zebrafish DNA sequence from clone CH211-255L14 in linkage group 25,
             complete sequence
          Length = 193619

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   acacacaaaccagacgtgaa 180
             ||||||||||||||||||||
Sbjct: 36775 acacacaaaccagacgtgaa 36756
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>gb|AC026351.29| Homo sapiens 12 BAC RP11-176O5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 179350

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   cagacgttcaacaatcagca 261
             ||||||||||||||||||||
Sbjct: 96679 cagacgttcaacaatcagca 96698
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>gb|BC083571.1| Rattus norvegicus progesterone receptor membrane component 2, mRNA
           (cDNA clone MGC:93874 IMAGE:7112203), complete cds
          Length = 1974

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 cgcgggagcgacggcagcga 360
           ||||||||||||||||||||
Sbjct: 88  cgcgggagcgacggcagcga 107
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>dbj|AK115640.1| Ciona intestinalis cDNA, clone:cilv010n11, full insert sequence
          Length = 2701

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 404 gttgaccaggagcgcctccg 423
           ||||||||||||||||||||
Sbjct: 461 gttgaccaggagcgcctccg 480
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>gb|U43531.1|GLU43531 Giardia intestinalis pyruvate,phosphate dikinase gene, complete cds
          Length = 2803

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 442 cggagctctgcaggaaggtc 461
           ||||||||||||||||||||
Sbjct: 185 cggagctctgcaggaaggtc 204
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>emb|Z25819.1|PRSSRRNA P.reichenowi small subunit rRNA (from A-type allele) (partial)
          Length = 2066

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 18   tatttgtatctttgatgctt 37
            ||||||||||||||||||||
Sbjct: 1754 tatttgtatctttgatgctt 1773
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>ref|NM_001008374.1| Rattus norvegicus progesterone receptor membrane component 2
           (Pgrmc2), mRNA
          Length = 1974

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 cgcgggagcgacggcagcga 360
           ||||||||||||||||||||
Sbjct: 88  cgcgggagcgacggcagcga 107
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>gb|M19172.1|PFARGEA P.falciparum 18S ribosomal RNA in asexual parasites
          Length = 2090

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 18   tatttgtatctttgatgctt 37
            ||||||||||||||||||||
Sbjct: 1751 tatttgtatctttgatgctt 1770


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,362,046
Number of Sequences: 3902068
Number of extensions: 3362046
Number of successful extensions: 67856
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67182
Number of HSP's gapped (non-prelim): 673
length of query: 500
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 478
effective length of database: 17,147,199,772
effective search space: 8196361491016
effective search space used: 8196361491016
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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