ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart10h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ETOL1_ARATH (Q9ZQX6) ETO1-like protein 1 (Ethylene overproducer ... 30 1.5
2TRPF_CAMJE (Q9PIF3) N-(5'-phosphoribosyl)anthranilate isomerase ... 30 1.5
3PER23_ARATH (O80912) Peroxidase 23 precursor (EC 1.11.1.7) (Atpe... 28 5.9
4PER22_ARATH (P24102) Peroxidase 22 precursor (EC 1.11.1.7) (Atpe... 28 5.9
5MAAZ4_SCHCO (P37938) Mating-type protein A-alpha Z4 28 7.7

>ETOL1_ARATH (Q9ZQX6) ETO1-like protein 1 (Ethylene overproducer 1-like protein|
           1)
          Length = 888

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +1

Query: 40  GLLHFKRSQIVVQTIDRTKHQIIYCITRALDLMHTARTHISSDHQLISLQPPGWIL 207
           G+L+F++S ++++         + C   A+  +  AR H SSDH+ +  +  GWIL
Sbjct: 603 GVLYFRQSLLLLR---------LNCPEAAMRSLQLAREHASSDHERLVYE--GWIL 647



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>TRPF_CAMJE (Q9PIF3) N-(5'-phosphoribosyl)anthranilate isomerase (EC 5.3.1.24)|
           (PRAI)
          Length = 199

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 16  LNCGRNILGLLHFKRSQIVVQTIDRTKHQIIYCITRA-LDLMHTARTHISSDHQLISLQ 189
           L   RN+  + H K  ++V   +D    QI+ CI  A LD +   RT    + +++ +Q
Sbjct: 39  LEQARNLSAIFHEKDKKVVGVFVDENLEQILRCIKEAKLDGIQIYRTITKEEFEILKVQ 97



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>PER23_ARATH (O80912) Peroxidase 23 precursor (EC 1.11.1.7) (Atperox P23)|
           (ATP34)
          Length = 349

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = -3

Query: 304 GEIRRNCRVINP 269
           GEIR+NCRV+NP
Sbjct: 323 GEIRQNCRVVNP 334



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>PER22_ARATH (P24102) Peroxidase 22 precursor (EC 1.11.1.7) (Atperox P22)|
           (ATPEa) (Basic peroxidase E)
          Length = 349

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = -3

Query: 304 GEIRRNCRVINP 269
           GEIR+NCRV+NP
Sbjct: 323 GEIRQNCRVVNP 334



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>MAAZ4_SCHCO (P37938) Mating-type protein A-alpha Z4|
          Length = 940

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = -1

Query: 306 RARSGATAGSSTLPTPLVPAPFTIIFSRDHQVLQDPTRWLQAD*LVVT---RDMCTCSVH 136
           R+RS  +  S    +  +P P   + S   +V  DPT W+  D    T   RD+   +  
Sbjct: 583 RSRSSPSVSSPPSVSVSLPLPSRGVPSGGIKVTGDPTPWVNWDLEAHTQAPRDLTAATKS 642

Query: 135 EVECSSDAI 109
              CS DA+
Sbjct: 643 SAGCSVDAV 651


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,361,293
Number of Sequences: 219361
Number of extensions: 759829
Number of successful extensions: 1730
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1730
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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