ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart10g12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188589.1| Oryza sativa (japonica cultivar-group), predic... 170 2e-39
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 170 2e-39
3dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic D... 170 2e-39
4dbj|AK069655.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 2e-39
5dbj|AK059778.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 2e-39
6gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 78 3e-11
7ref|XM_479013.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.002
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
10dbj|AP003915.4| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
11dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
12dbj|AP004564.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
13dbj|AP004764.2| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
14emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete ch... 50 0.006
15gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR c... 50 0.006
16gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 50 0.006
17gb|AY842251.1| Chlamydomonas reinhardtii hydroxypyruvate reducta... 46 0.098
18ref|XM_470988.1| Oryza sativa (japonica cultivar-group), predic... 44 0.39
19gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 44 0.39
20dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
21dbj|AK070553.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.39
22emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4,... 44 0.39
23gb|CP000249.1| Frankia sp. CcI3, complete genome 42 1.5
24emb|BX927065.8| Zebrafish DNA sequence from clone CH211-242M18 i... 42 1.5
25gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 6.0
26gb|AC186172.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 6.0
27emb|BX005403.15| Zebrafish DNA sequence from clone DKEY-81J11 in... 40 6.0
28gb|AC122255.2| Mus musculus BAC clone RP23-178F22 from chromosom... 40 6.0
29gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 6.0
30emb|AL391148.1|ATT21H19 Arabidopsis thaliana DNA chromosome 5, B... 40 6.0
31gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 6.0
32dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001 40 6.0
33emb|BX001025.23| Zebrafish DNA sequence from clone CH211-240D20,... 40 6.0
34emb|BX248236.16| Zebrafish DNA sequence from clone CH211-207B24 ... 40 6.0
35gb|AC119881.10| Mus musculus chromosome 3, clone RP24-428N8, com... 40 6.0
36gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.0
37emb|BX004878.8| Zebrafish DNA sequence from clone DKEY-11H2 in l... 40 6.0
38emb|AL954129.11| Zebrafish DNA sequence from clone CH211-200P22 ... 40 6.0
39gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 6.0
40emb|BX927146.27| Zebrafish DNA sequence from clone DKEY-277I15 i... 40 6.0
41emb|AL935316.7| Zebrafish DNA sequence from clone CH211-239C9 in... 40 6.0
42emb|AL683897.5| Mouse DNA sequence from clone RP23-208E23 on chr... 40 6.0
43emb|Z30348.1|BMCOLGMR B.mori mRNA for collagen 40 6.0 
>ref|NM_188589.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 951

 Score =  170 bits (86), Expect = 2e-39
 Identities = 212/254 (83%)
 Strand = Plus / Minus

                                                                       
Query: 194 acatgcgcctccaggttacccaggacaaggtccgccatcgcctggcgtgtctcgtgcgtc 253
           ||||||||||||||||| || || || ||||| ||||| |||  ||| ||||||||||||
Sbjct: 917 acatgcgcctccaggttgccgagcaccaggtcggccatggccgtgcgcgtctcgtgcgtc 858

                                                                       
Query: 254 ccgctccccacgtggggcaccagcacgacgttgtcgagcgcgaacagcgcctcgggcacg 313
            |||| ||||| || |||||||||||||||||||| | | ||| ||||||||||||||||
Sbjct: 857 gcgctgcccacatgcggcaccagcacgacgttgtccatcccgagcagcgcctcgggcacg 798

                                                                       
Query: 314 ttgggctcgtcctcgaacacgtcaaggcccgccccgccgaggcgcccctcgacgagggcc 373
           || |||||||||||||||||||| || || || |||||||| || || ||| | || |||
Sbjct: 797 ttcggctcgtcctcgaacacgtccagcccggcgccgccgagccggccgtcggccagcgcc 738

                                                                       
Query: 374 gagaccagctcaggctcgtcgacgtgagggccgcgaccgatgtttatgagcacgccctta 433
           |  |||| | | | |||||||||||| || || || |||||||| || ||||||||| | 
Sbjct: 737 gccaccatcgccgcctcgtcgacgtgcggcccccggccgatgttgatcagcacgcccctg 678

                         
Query: 434 ggccccagcgcctc 447
           ||||||||||||||
Sbjct: 677 ggccccagcgcctc 664
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  170 bits (86), Expect = 2e-39
 Identities = 212/254 (83%)
 Strand = Plus / Plus

                                                                           
Query: 194     acatgcgcctccaggttacccaggacaaggtccgccatcgcctggcgtgtctcgtgcgtc 253
               ||||||||||||||||| || || || ||||| ||||| |||  ||| ||||||||||||
Sbjct: 7099294 acatgcgcctccaggttgccgagcaccaggtcggccatggccgtgcgcgtctcgtgcgtc 7099353

                                                                           
Query: 254     ccgctccccacgtggggcaccagcacgacgttgtcgagcgcgaacagcgcctcgggcacg 313
                |||| ||||| || |||||||||||||||||||| | | ||| ||||||||||||||||
Sbjct: 7099354 gcgctgcccacatgcggcaccagcacgacgttgtccatcccgagcagcgcctcgggcacg 7099413

                                                                           
Query: 314     ttgggctcgtcctcgaacacgtcaaggcccgccccgccgaggcgcccctcgacgagggcc 373
               || |||||||||||||||||||| || || || |||||||| || || ||| | || |||
Sbjct: 7099414 ttcggctcgtcctcgaacacgtccagcccggcgccgccgagccggccgtcggccagcgcc 7099473

                                                                           
Query: 374     gagaccagctcaggctcgtcgacgtgagggccgcgaccgatgtttatgagcacgccctta 433
               |  |||| | | | |||||||||||| || || || |||||||| || ||||||||| | 
Sbjct: 7099474 gccaccatcgccgcctcgtcgacgtgcggcccccggccgatgttgatcagcacgcccctg 7099533

                             
Query: 434     ggccccagcgcctc 447
               ||||||||||||||
Sbjct: 7099534 ggccccagcgcctc 7099547
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>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0452F10
          Length = 145120

 Score =  170 bits (86), Expect = 2e-39
 Identities = 212/254 (83%)
 Strand = Plus / Plus

                                                                         
Query: 194   acatgcgcctccaggttacccaggacaaggtccgccatcgcctggcgtgtctcgtgcgtc 253
             ||||||||||||||||| || || || ||||| ||||| |||  ||| ||||||||||||
Sbjct: 86874 acatgcgcctccaggttgccgagcaccaggtcggccatggccgtgcgcgtctcgtgcgtc 86933

                                                                         
Query: 254   ccgctccccacgtggggcaccagcacgacgttgtcgagcgcgaacagcgcctcgggcacg 313
              |||| ||||| || |||||||||||||||||||| | | ||| ||||||||||||||||
Sbjct: 86934 gcgctgcccacatgcggcaccagcacgacgttgtccatcccgagcagcgcctcgggcacg 86993

                                                                         
Query: 314   ttgggctcgtcctcgaacacgtcaaggcccgccccgccgaggcgcccctcgacgagggcc 373
             || |||||||||||||||||||| || || || |||||||| || || ||| | || |||
Sbjct: 86994 ttcggctcgtcctcgaacacgtccagcccggcgccgccgagccggccgtcggccagcgcc 87053

                                                                         
Query: 374   gagaccagctcaggctcgtcgacgtgagggccgcgaccgatgtttatgagcacgccctta 433
             |  |||| | | | |||||||||||| || || || |||||||| || ||||||||| | 
Sbjct: 87054 gccaccatcgccgcctcgtcgacgtgcggcccccggccgatgttgatcagcacgcccctg 87113

                           
Query: 434   ggccccagcgcctc 447
             ||||||||||||||
Sbjct: 87114 ggccccagcgcctc 87127
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>dbj|AK069655.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031I17, full
            insert sequence
          Length = 1397

 Score =  170 bits (86), Expect = 2e-39
 Identities = 212/254 (83%)
 Strand = Plus / Minus

                                                                        
Query: 194  acatgcgcctccaggttacccaggacaaggtccgccatcgcctggcgtgtctcgtgcgtc 253
            ||||||||||||||||| || || || ||||| ||||| |||  ||| ||||||||||||
Sbjct: 1175 acatgcgcctccaggttgccgagcaccaggtcggccatggccgtgcgcgtctcgtgcgtc 1116

                                                                        
Query: 254  ccgctccccacgtggggcaccagcacgacgttgtcgagcgcgaacagcgcctcgggcacg 313
             |||| ||||| || |||||||||||||||||||| | | ||| ||||||||||||||||
Sbjct: 1115 gcgctgcccacatgcggcaccagcacgacgttgtccatcccgagcagcgcctcgggcacg 1056

                                                                        
Query: 314  ttgggctcgtcctcgaacacgtcaaggcccgccccgccgaggcgcccctcgacgagggcc 373
            || |||||||||||||||||||| || || || |||||||| || || ||| | || |||
Sbjct: 1055 ttcggctcgtcctcgaacacgtccagcccggcgccgccgagccggccgtcggccagcgcc 996

                                                                        
Query: 374  gagaccagctcaggctcgtcgacgtgagggccgcgaccgatgtttatgagcacgccctta 433
            |  |||| | | | |||||||||||| || || || |||||||| || ||||||||| | 
Sbjct: 995  gccaccatcgccgcctcgtcgacgtgcggcccccggccgatgttgatcagcacgcccctg 936

                          
Query: 434  ggccccagcgcctc 447
            ||||||||||||||
Sbjct: 935  ggccccagcgcctc 922
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>dbj|AK059778.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B03, full
            insert sequence
          Length = 1275

 Score =  170 bits (86), Expect = 2e-39
 Identities = 212/254 (83%)
 Strand = Plus / Minus

                                                                        
Query: 194  acatgcgcctccaggttacccaggacaaggtccgccatcgcctggcgtgtctcgtgcgtc 253
            ||||||||||||||||| || || || ||||| ||||| |||  ||| ||||||||||||
Sbjct: 1051 acatgcgcctccaggttgccgagcaccaggtcggccatggccgtgcgcgtctcgtgcgtc 992

                                                                        
Query: 254  ccgctccccacgtggggcaccagcacgacgttgtcgagcgcgaacagcgcctcgggcacg 313
             |||| ||||| || |||||||||||||||||||| | | ||| ||||||||||||||||
Sbjct: 991  gcgctgcccacatgcggcaccagcacgacgttgtccatcccgagcagcgcctcgggcacg 932

                                                                        
Query: 314  ttgggctcgtcctcgaacacgtcaaggcccgccccgccgaggcgcccctcgacgagggcc 373
            || |||||||||||||||||||| || || || |||||||| || || ||| | || |||
Sbjct: 931  ttcggctcgtcctcgaacacgtccagcccggcgccgccgagccggccgtcggccagcgcc 872

                                                                        
Query: 374  gagaccagctcaggctcgtcgacgtgagggccgcgaccgatgtttatgagcacgccctta 433
            |  |||| | | | |||||||||||| || || || |||||||| || ||||||||| | 
Sbjct: 871  gccaccatcgccgcctcgtcgacgtgcggcccccggccgatgttgatcagcacgcccctg 812

                          
Query: 434  ggccccagcgcctc 447
            ||||||||||||||
Sbjct: 811  ggccccagcgcctc 798
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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                           
Query: 242     gtctcgtgcgtcccgctccccacgtggggcaccagcacgacgttgtcgagcgcgaacagc 301
               ||||| ||||| |||||  ||||||| |||| |||||| |||||||||||||||||||  
Sbjct: 1827226 gtctcatgcgtgccgctggccacgtgcggcagcagcaccacgttgtcgagcgcgaacaat 1827167

                                                  
Query: 302     gcctcgggcacgttgggctcgtcctcgaacacgtc 336
               || ||||||||||  ||||||  ||||||||||||
Sbjct: 1827166 gcttcgggcacgtgcggctcgcgctcgaacacgtc 1827132
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>ref|XM_479013.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 414

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 308 ggcacgttgggctcgtcctcgaacac 333
           ||||||||||||||||||||||||||
Sbjct: 281 ggcacgttgggctcgtcctcgaacac 256
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 308      ggcacgttgggctcgtcctcgaacac 333
                ||||||||||||||||||||||||||
Sbjct: 21702922 ggcacgttgggctcgtcctcgaacac 21702897
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 308      ggcacgttgggctcgtcctcgaacac 333
                ||||||||||||||||||||||||||
Sbjct: 24318225 ggcacgttgggctcgtcctcgaacac 24318200
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>dbj|AP003915.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1579_C03
          Length = 122851

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 308   ggcacgttgggctcgtcctcgaacac 333
             ||||||||||||||||||||||||||
Sbjct: 51418 ggcacgttgggctcgtcctcgaacac 51393
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>dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0453E05
          Length = 137364

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 308    ggcacgttgggctcgtcctcgaacac 333
              ||||||||||||||||||||||||||
Sbjct: 129776 ggcacgttgggctcgtcctcgaacac 129751
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>dbj|AP004564.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0479C12
          Length = 136799

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 308   ggcacgttgggctcgtcctcgaacac 333
             ||||||||||||||||||||||||||
Sbjct: 70492 ggcacgttgggctcgtcctcgaacac 70467
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>dbj|AP004764.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0708B04
          Length = 170523

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 308    ggcacgttgggctcgtcctcgaacac 333
              ||||||||||||||||||||||||||
Sbjct: 163096 ggcacgttgggctcgtcctcgaacac 163071
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>emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete chromosome; segment 11/12
          Length = 333800

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                          
Query: 298   cagcgcctcgggcacgttgggctcgtcctcgaacacgtcaaggcc 342
             |||||||||||| || |||||||||| |||||| ||||| |||||
Sbjct: 49413 cagcgcctcgggaacattgggctcgttctcgaagacgtcgaggcc 49457
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>gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR class RGA, HCBT-like
             putative defense response protein, and putative alliin
             lyase genes, complete cds; and unknown genes
          Length = 106618

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 311   acgttgggctcgtcctcgaacacgtcaag 339
             ||||||||||||| |||||||||||||||
Sbjct: 88546 acgttgggctcgtgctcgaacacgtcaag 88574
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                               
Query: 317    ggctcgtcctcgaacacgtcaaggcccgccccg 349
              |||||||||||||||||||| || |||||||||
Sbjct: 853138 ggctcgtcctcgaacacgtcgagccccgccccg 853106
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>gb|AY842251.1| Chlamydomonas reinhardtii hydroxypyruvate reductase mRNA, partial
           cds
          Length = 931

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 316 gggctcgtcctcgaacacgtcaaggcc 342
           ||||||||||||||||||||| |||||
Sbjct: 774 gggctcgtcctcgaacacgtccaggcc 748
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>ref|XM_470988.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 981

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 308 ggcacgttgggctcgtcctcgaacac 333
           ||||||||||||||||| ||||||||
Sbjct: 824 ggcacgttgggctcgtcgtcgaacac 799
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 317     ggctcgtcctcgaacacgtcaaggcccgcc 346
               |||||| | |||||||||||||||||||||
Sbjct: 3235190 ggctcgccttcgaacacgtcaaggcccgcc 3235219
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 308    ggcacgttgggctcgtcctcgaacac 333
              ||||||||||||||||| ||||||||
Sbjct: 437415 ggcacgttgggctcgtcgtcgaacac 437390
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>dbj|AK070553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023059A13, full
           insert sequence
          Length = 1100

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 308 ggcacgttgggctcgtcctcgaacac 333
           ||||||||||||||||| ||||||||
Sbjct: 866 ggcacgttgggctcgtcgtcgaacac 841
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>emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085F13,
             complete sequence
          Length = 130249

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 308   ggcacgttgggctcgtcctcgaacac 333
             ||||||||||||||||| ||||||||
Sbjct: 76167 ggcacgttgggctcgtcgtcgaacac 76142
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 278     acgacgttgtcgagcgcgaacagcg 302
               ||||||||||||||| |||||||||
Sbjct: 4344160 acgacgttgtcgagcccgaacagcg 4344184
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>emb|BX927065.8| Zebrafish DNA sequence from clone CH211-242M18 in linkage group 18,
             complete sequence
          Length = 58110

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 6     aagaaatcaaatttattaacc 26
             |||||||||||||||||||||
Sbjct: 39809 aagaaatcaaatttattaacc 39829
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 226     cgccatcgcctggcgtgtctcgtgcgtc 253
               ||||||||| ||||| ||||||||||||
Sbjct: 2060854 cgccatcgcatggcgcgtctcgtgcgtc 2060881
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>gb|AC186172.1| Ornithorhynchus anatinus chromosome UNK clone OABb-43A1, complete
              sequence
          Length = 180865

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    tcctcatatacaacacacga 132
              ||||||||||||||||||||
Sbjct: 116863 tcctcatatacaacacacga 116882
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>emb|BX005403.15| Zebrafish DNA sequence from clone DKEY-81J11 in linkage group 17,
             complete sequence
          Length = 74369

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     gaaatcaaatttattaacct 27
             ||||||||||||||||||||
Sbjct: 52333 gaaatcaaatttattaacct 52352
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>gb|AC122255.2| Mus musculus BAC clone RP23-178F22 from chromosome 3, complete sequence
          Length = 185132

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     aggaagaaatcaaatttatt 22
             ||||||||||||||||||||
Sbjct: 63092 aggaagaaatcaaatttatt 63111
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 173     gtcagcagcggcttcttcag 192
               ||||||||||||||||||||
Sbjct: 1114228 gtcagcagcggcttcttcag 1114247
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>emb|AL391148.1|ATT21H19 Arabidopsis thaliana DNA chromosome 5, BAC clone T21H19 (ESSA project)
          Length = 77311

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    tttcattatgatcccggaaa 86
             ||||||||||||||||||||
Sbjct: 45755 tttcattatgatcccggaaa 45774
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 269     ggcaccagcacgacgttgtcgagc 292
               |||||||||||| |||||||||||
Sbjct: 1454649 ggcaccagcacgtcgttgtcgagc 1454672
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>dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001
          Length = 2005935

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 283    gttgtcgagcgcgaacagcg 302
              ||||||||||||||||||||
Sbjct: 195709 gttgtcgagcgcgaacagcg 195690
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>emb|BX001025.23| Zebrafish DNA sequence from clone CH211-240D20, complete sequence
          Length = 179475

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      agaaatcaaatttattaacc 26
              ||||||||||||||||||||
Sbjct: 110909 agaaatcaaatttattaacc 110928
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>emb|BX248236.16| Zebrafish DNA sequence from clone CH211-207B24 in linkage group 3,
             complete sequence
          Length = 228572

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     agaaatcaaatttattaacc 26
             ||||||||||||||||||||
Sbjct: 88131 agaaatcaaatttattaacc 88112
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>gb|AC119881.10| Mus musculus chromosome 3, clone RP24-428N8, complete sequence
          Length = 167095

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      aggaagaaatcaaatttatt 22
              ||||||||||||||||||||
Sbjct: 119707 aggaagaaatcaaatttatt 119726
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 288    cgagcgcgaacagcgcctcg 307
              ||||||||||||||||||||
Sbjct: 817553 cgagcgcgaacagcgcctcg 817572
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>emb|BX004878.8| Zebrafish DNA sequence from clone DKEY-11H2 in linkage group 6,
             complete sequence
          Length = 254657

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     agaaatcaaatttattaacc 26
             ||||||||||||||||||||
Sbjct: 85434 agaaatcaaatttattaacc 85415
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>emb|AL954129.11| Zebrafish DNA sequence from clone CH211-200P22 in linkage group 24,
              complete sequence
          Length = 161275

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      gaaatcaaatttattaacct 27
              ||||||||||||||||||||
Sbjct: 130269 gaaatcaaatttattaacct 130250
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 45      tttaccgaccgacgacaaca 64
               ||||||||||||||||||||
Sbjct: 1037720 tttaccgaccgacgacaaca 1037701
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>emb|BX927146.27| Zebrafish DNA sequence from clone DKEY-277I15 in linkage group 22,
             complete sequence
          Length = 70937

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     gaaatcaaatttattaacct 27
             ||||||||||||||||||||
Sbjct: 55018 gaaatcaaatttattaacct 55037
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>emb|AL935316.7| Zebrafish DNA sequence from clone CH211-239C9 in linkage group 3,
             complete sequence
          Length = 174887

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     agaaatcaaatttattaacc 26
             ||||||||||||||||||||
Sbjct: 21752 agaaatcaaatttattaacc 21771
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>emb|AL683897.5| Mouse DNA sequence from clone RP23-208E23 on chromosome 2, complete
             sequence
          Length = 187308

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    atgatcccggaaaagaaaac 93
             ||||||||||||||||||||
Sbjct: 29621 atgatcccggaaaagaaaac 29602
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>emb|Z30348.1|BMCOLGMR B.mori mRNA for collagen
          Length = 1993

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 205 caggttacccaggacaaggt 224
           ||||||||||||||||||||
Sbjct: 707 caggttacccaggacaaggt 726


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,303,093
Number of Sequences: 3902068
Number of extensions: 3303093
Number of successful extensions: 62548
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61640
Number of HSP's gapped (non-prelim): 903
length of query: 448
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 426
effective length of database: 17,147,199,772
effective search space: 7304707102872
effective search space used: 7304707102872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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