ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart10g11 |
|---|---|
| Clone Library Name | barley_pub |
>PSD6_ORYSA (Q8W425) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory particle non-ATPase subunit 7) (OsRPN7) Length = 389 Score = 161 bits (407), Expect = 1e-39 Identities = 82/86 (95%), Positives = 84/86 (97%) Frame = -3 Query: 480 YSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARN 301 YSQFLESYKSVTMEAMA+AFGVTVDFID ELSRFIAAGKLHCKIDKVA VLETNRPDARN Sbjct: 304 YSQFLESYKSVTMEAMASAFGVTVDFIDLELSRFIAAGKLHCKIDKVACVLETNRPDARN 363 Query: 300 AFYQSTIKQGDFLLNRIQKLSRVIDL 223 AFYQ+TIKQGDFLLNRIQKLSRVIDL Sbjct: 364 AFYQATIKQGDFLLNRIQKLSRVIDL 389
>PSD6_ARATH (Q93Y35) Probable 26S proteasome non-ATPase regulatory subunit 6| Length = 387 Score = 160 bits (404), Expect = 2e-39 Identities = 80/86 (93%), Positives = 84/86 (97%) Frame = -3 Query: 480 YSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARN 301 YSQFLESYKSVT+EAMA AFGV+VDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDA+N Sbjct: 302 YSQFLESYKSVTVEAMAKAFGVSVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDAKN 361 Query: 300 AFYQSTIKQGDFLLNRIQKLSRVIDL 223 A YQ+TIKQGDFLLNRIQKLSRVIDL Sbjct: 362 ALYQATIKQGDFLLNRIQKLSRVIDL 387
>PSD6_MOUSE (Q99JI4) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (p42A) Length = 389 Score = 129 bits (324), Expect = 4e-30 Identities = 63/86 (73%), Positives = 75/86 (87%) Frame = -3 Query: 480 YSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARN 301 YSQ LESY+S+T+ MA AFGV VDFIDQELSRFIAAG+LHCKIDKV ++ETNRPD++N Sbjct: 304 YSQLLESYRSLTLGYMAEAFGVGVDFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKN 363 Query: 300 AFYQSTIKQGDFLLNRIQKLSRVIDL 223 YQ TIK+GD LLNR+QKLSRVI++ Sbjct: 364 WQYQETIKKGDLLLNRVQKLSRVINM 389
>PSD6_HUMAN (Q15008) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (p42A) (Proteasome regulatory particle subunit p44S10) (Phosphonoformate immuno-associated protein 4) (Breast cancer-associated protein SGA-113M) Length = 389 Score = 127 bits (320), Expect = 1e-29 Identities = 62/86 (72%), Positives = 75/86 (87%) Frame = -3 Query: 480 YSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARN 301 YSQ LESY+S+T+ MA AFGV V+FIDQELSRFIAAG+LHCKIDKV ++ETNRPD++N Sbjct: 304 YSQLLESYRSLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKN 363 Query: 300 AFYQSTIKQGDFLLNRIQKLSRVIDL 223 YQ TIK+GD LLNR+QKLSRVI++ Sbjct: 364 WQYQETIKKGDLLLNRVQKLSRVINM 389
>PSD6_DROME (Q9V3G7) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (Rpn7 protein) Length = 389 Score = 127 bits (319), Expect = 2e-29 Identities = 59/86 (68%), Positives = 77/86 (89%) Frame = -3 Query: 480 YSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARN 301 Y+Q LESY+S+T++ MA +FGVTV++IDQEL+RFIAAG+LH K+D+V G++ETNRPD +N Sbjct: 304 YTQLLESYRSLTLQYMAESFGVTVEYIDQELARFIAAGRLHAKVDRVGGIVETNRPDNKN 363 Query: 300 AFYQSTIKQGDFLLNRIQKLSRVIDL 223 YQ+TIKQGD LLNRIQKLSRVI++ Sbjct: 364 WQYQATIKQGDLLLNRIQKLSRVINI 389
>RPN7_SCHPO (Q10335) Probable 26S proteasome regulatory subunit rpn7| Length = 409 Score = 100 bits (248), Expect = 3e-21 Identities = 47/91 (51%), Positives = 69/91 (75%) Frame = -3 Query: 480 YSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARN 301 Y+Q LESY+++++++MAA+FGV+VD+ID++L+ FI KL+C ID+V GV+ TNRPD +N Sbjct: 319 YAQLLESYRALSIDSMAASFGVSVDYIDRDLASFIPDNKLNCVIDRVNGVVFTNRPDEKN 378 Query: 300 AFYQSTIKQGDFLLNRIQKLSRVIDL*AFFV 208 YQ +KQGD LLN++QK + AF V Sbjct: 379 RQYQEVVKQGDVLLNKLQKYQATVMRGAFKV 409
>PSD6_CAEEL (Q20585) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit rpn-7) Length = 410 Score = 98.2 bits (243), Expect = 1e-20 Identities = 48/85 (56%), Positives = 62/85 (72%) Frame = -3 Query: 480 YSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARN 301 Y QFL YK+V ++ MA FGV+ FID+EL R IA G+L C+ID V GV+E N D++N Sbjct: 325 YEQFLTPYKTVRIDMMAKDFGVSRAFIDRELHRLIATGQLQCRIDAVNGVIEVNHRDSKN 384 Query: 300 AFYQSTIKQGDFLLNRIQKLSRVID 226 Y++ IK GD LLNRIQKL+RVI+ Sbjct: 385 HLYKAVIKDGDILLNRIQKLARVIN 409
>RPN7_YEAST (Q06103) 26S proteasome regulatory subunit RPN7| Length = 429 Score = 94.7 bits (234), Expect = 1e-19 Identities = 43/86 (50%), Positives = 65/86 (75%) Frame = -3 Query: 480 YSQFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARN 301 Y+Q LESYK++++++MA+AFGV+V F+D +L +FI +L+C ID+V G++ETNRPD +N Sbjct: 338 YAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKN 397 Query: 300 AFYQSTIKQGDFLLNRIQKLSRVIDL 223 A Y +KQGD LL ++QK + L Sbjct: 398 AQYHLLVKQGDGLLTKLQKYGAAVRL 423
>CSN1_MOUSE (Q99LD4) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| (SGN1) (JAB1-containing signalosome subunit 1) (G protein pathway suppressor 1) (GPS1 protein) Length = 471 Score = 43.5 bits (101), Expect = 3e-04 Identities = 21/68 (30%), Positives = 36/68 (52%) Frame = -3 Query: 474 QFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAF 295 Q+ Y S M MAAAF TV ++ EL++ I G ++ +ID + +L D R+ Sbjct: 356 QYFSPYVSADMHKMAAAFNTTVAALEDELTQLILEGLINARIDSHSKILYARDVDQRSTT 415 Query: 294 YQSTIKQG 271 ++ ++ G Sbjct: 416 FEKSLLMG 423
>CSN1_RAT (P97834) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| (SGN1) (JAB1-containing signalosome subunit 1) (G protein pathway suppressor 1) (MFH protein) Length = 471 Score = 43.1 bits (100), Expect = 4e-04 Identities = 21/68 (30%), Positives = 36/68 (52%) Frame = -3 Query: 474 QFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAF 295 Q+ Y S M MAAAF TV ++ EL++ I G ++ +ID + +L D R+ Sbjct: 356 QYFSPYVSADMHKMAAAFNTTVAALEDELTQVILEGLINARIDSHSKILYARDVDQRSTT 415 Query: 294 YQSTIKQG 271 ++ ++ G Sbjct: 416 FEKSLLMG 423
>CSN1_ARATH (P45432) COP9 signalosome complex subunit 1 (CSN complex subunit 1)| (Constitutive photomorphogenesis protein 11) (FUSCA protein 6) (FUSCA6) Length = 441 Score = 40.0 bits (92), Expect = 0.003 Identities = 20/69 (28%), Positives = 35/69 (50%) Frame = -3 Query: 474 QFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAF 295 Q+ + SV + MA AF +V +++EL I ++ +ID +L D RNA Sbjct: 345 QYTLPFVSVDLSRMADAFKTSVSGLEKELEALITDNQIQARIDSHNKILYARHADQRNAT 404 Query: 294 YQSTIKQGD 268 +Q ++ G+ Sbjct: 405 FQKVLQMGN 413
>CSN1_DROME (Q9VVU5) COP9 signalosome complex subunit 1b (Signalosome subunit| 1b) (Dch1-2) Length = 525 Score = 38.9 bits (89), Expect = 0.007 Identities = 19/68 (27%), Positives = 33/68 (48%) Frame = -3 Query: 474 QFLESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAF 295 Q+ Y S M MA AF +V ++ E+ + I G++ +ID +L D RN+ Sbjct: 405 QYFSPYMSADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSHNKILFAKEADQRNST 464 Query: 294 YQSTIKQG 271 ++ + G Sbjct: 465 FERALIMG 472
>PSD12_MOUSE (Q9D8W5) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 38.5 bits (88), Expect = 0.009 Identities = 20/77 (25%), Positives = 39/77 (50%) Frame = -3 Query: 459 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 280 Y +TM+ MA ++VD + LS + + K+D++AGV+ RP N Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWS 428 Query: 279 KQGDFLLNRIQKLSRVI 229 ++ + L++ + K + +I Sbjct: 429 QKLNSLMSLVNKTTHLI 445
>PSD12_PONPY (Q5RBI3) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 38.1 bits (87), Expect = 0.012 Identities = 19/77 (24%), Positives = 39/77 (50%) Frame = -3 Query: 459 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 280 Y +TM+ MA ++VD + LS + + K+D++AG++ RP N Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWS 428 Query: 279 KQGDFLLNRIQKLSRVI 229 ++ + L++ + K + +I Sbjct: 429 QKLNSLMSLVNKTTHLI 445
>PSD12_HUMAN (O00232) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 38.1 bits (87), Expect = 0.012 Identities = 19/77 (24%), Positives = 39/77 (50%) Frame = -3 Query: 459 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 280 Y +TM+ MA ++VD + LS + + K+D++AG++ RP N Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWS 428 Query: 279 KQGDFLLNRIQKLSRVI 229 ++ + L++ + K + +I Sbjct: 429 QKLNSLMSLVNKTTHLI 445
>CRT_CLOAB (P52046) 3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) (Crotonase)| Length = 261 Score = 30.4 bits (67), Expect = 2.6 Identities = 17/42 (40%), Positives = 25/42 (59%) Frame = -3 Query: 354 KIDKVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVI 229 K KVA V+ NRP A NA T+K+ D+++ I+ S V+ Sbjct: 10 KEGKVA-VVTINRPKALNALNSDTLKEMDYVIGEIENDSEVL 50
>TRME_PHOLL (Q7MAX1) tRNA modification GTPase trmE| Length = 454 Score = 30.0 bits (66), Expect = 3.3 Identities = 17/47 (36%), Positives = 28/47 (59%) Frame = -3 Query: 411 VDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQG 271 +DF D+E+ F++ GK+ K+D+V LE R AR S +++G Sbjct: 174 IDFPDEEID-FLSDGKIEAKLDEVIVELERVRSQARQG---SLLREG 216
>DUS2_BACSU (O31546) Probable tRNA-dihydrouridine synthase 2 (EC 1.-.-.-)| Length = 325 Score = 29.6 bits (65), Expect = 4.4 Identities = 11/27 (40%), Positives = 20/27 (74%) Frame = -1 Query: 482 SIRSSLSHTRV*QWRQWLPHLV*QLIS 402 S+++ L +T V +WR+WL H++ Q I+ Sbjct: 141 SVKTRLGYTDVDEWREWLTHILKQDIA 167
>HXK4_RAT (P17712) Glucokinase (EC 2.7.1.2) (Hexokinase-4) (Hexokinase type| IV) (HK IV) (HK4) (Hexokinase-D) Length = 465 Score = 29.3 bits (64), Expect = 5.7 Identities = 21/79 (26%), Positives = 35/79 (44%) Frame = +2 Query: 242 SFCMRFSRKSPCLMVDW*KAFRASGRFVSRTPATLSILQ*SFPAAIKRDNSWSMKSTVTP 421 SF +R ++++W K F+ASG + L AIKR + M Sbjct: 151 SFPVRHEDLDKGILLNWTKGFKASGAEGNNIVGLLR-------DAIKRRGDFEMDVVAMV 203 Query: 422 NAAAIASIVTLLYDSRNCE 478 N +A++++ Y+ R CE Sbjct: 204 N-DTVATMISCYYEDRQCE 221
>HXK4_MOUSE (P52792) Glucokinase (EC 2.7.1.2) (Hexokinase-4) (Hexokinase type| IV) (HK IV) (HK4) (Hexokinase-D) Length = 465 Score = 28.9 bits (63), Expect = 7.5 Identities = 21/79 (26%), Positives = 35/79 (44%) Frame = +2 Query: 242 SFCMRFSRKSPCLMVDW*KAFRASGRFVSRTPATLSILQ*SFPAAIKRDNSWSMKSTVTP 421 SF +R ++++W K F+ASG + L AIKR + M Sbjct: 151 SFPVRHEDIDKGILLNWTKGFKASGAEGNNIVGLLR-------DAIKRRGDFEMDVVAMV 203 Query: 422 NAAAIASIVTLLYDSRNCE 478 N +A++++ Y+ R CE Sbjct: 204 N-DTVATMISCYYEDRQCE 221
>LANC2_MOUSE (Q9JJK2) LanC-like protein 2 (Testis-specific adriamycin| sensitivity protein) Length = 450 Score = 28.5 bits (62), Expect = 9.7 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%) Frame = -2 Query: 178 YPTQAS-----LTRLCFGSCGVLAVLHFAFQIDQRERGVVFF*KSEDLTCNLTIWIKGI 17 YP+ S L C G+ GV+ VL A+Q+ + E+ + E + C+ IW +G+ Sbjct: 306 YPSSLSNETDRLVHWCHGAPGVIHVLLQAYQVFKEEKYL-----KEAMECSDVIWQRGL 359
>TTDN1_MOUSE (Q9D011) TTD nonphotosensitive 1 protein homolog| Length = 178 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = +3 Query: 258 SAGSLPA*WSTGRRHSVHQVGSSPGHQQPY 347 S G P +S S HQ G SPG QQ Y Sbjct: 81 SPGGYPGSYSRSPAGSQHQFGYSPGQQQTY 110 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,339,178 Number of Sequences: 219361 Number of extensions: 1403745 Number of successful extensions: 3479 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3420 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3477 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
