>COG1_MOUSE (Q9Z160) Conserved oligomeric Golgi complex component 1 (Low|
           density lipoprotein receptor defect B-complementing
           protein)
          Length = 980

 Score = 34.3 bits (77), Expect = 0.085
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
 Frame = +2

Query: 71  HINIFKIY--CNRFSQQQRLVSSTSADEPILMHFLVVSPQLSTVSYF----VHQNKRLCT 232
           H+   ++Y  C       +L SS S   PIL  F ++  Q++  S+F    +H++K L  
Sbjct: 139 HLQATQLYLLCCHLHSLLQLDSSNSRYSPILSRFPILIRQVAAASHFRSTILHESKMLLK 198

Query: 233 CMYVLNQAV 259
           C  V +QAV
Sbjct: 199 CQAVSDQAV 207

>COG1_HUMAN (Q8WTW3) Conserved oligomeric Golgi complex component 1|
          Length = 980

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +2

Query: 71  HINIFKIYCNRFSQQQRLVSSTSADEPILMHFLVVSPQLSTVSYF----VHQNKRLCTCM 238
           H     + C       +L SS+S   P+L  F ++  Q++  S+F    +H++K L  C 
Sbjct: 142 HATQLYLLCCHLHSLLQLDSSSSRYSPVLSRFPILIRQVAAASHFRSTILHESKMLLKCQ 201

Query: 239 YVLNQAV 259
            V +QAV
Sbjct: 202 GVSDQAV 208

>PUR4_RALSO (Q8XYN6) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)|
           (FGAM synthase) (FGAMS) (Formylglycinamide ribotide
           amidotransferase) (FGARAT) (Formylglycinamide ribotide
           synthetase)
          Length = 1369

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -1

Query: 227 RGACFGVRSTRQSTVEATRPESASRSAHLHSLMIPVVVAVR 105
           +G   G+   R+   EATR   A+ +AHLH  M  +VVA R
Sbjct: 119 KGLLRGLTGGRKQLDEATR---AAVAAHLHDRMTEIVVATR 156

>BTNL2_MOUSE (O70355) Butyrophilin-like protein 2 precursor (Fragment)|
          Length = 452

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -1

Query: 251 DSVRTYRCRGACFGVRSTRQSTV---EATRPESASRSAHLHSLMIPVVVAVRID 99
           DSV T  C     G+R T+++T+   E  + E AS S   HS   PV V   I+
Sbjct: 211 DSVETISCFIYSHGLRETQEATIALSERLQTELASVSVIGHSQPSPVQVGENIE 264

>ATG18_PICPA (Q8X1F5) Autophagy-related protein 18 (Glucose-induced selective|
           autophagy protein 12)
          Length = 543

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +2

Query: 86  KIYCNRFSQQQRLVSSTSADEPILMHFLVVSPQLSTVSYFVHQNKRLCTCMY 241
           KIYC  FSQ  R V ++SA E + +  L      +T+     +N++L    Y
Sbjct: 274 KIYCLSFSQDNRFVCASSATETVHIFRLGQDEANNTMPSRWSKNQKLALQRY 325

>TIM8A_RAT (Q9WVA1) Mitochondrial import inner membrane translocase subunit|
           Tim8 A (Deafness dystonia protein 1 homolog)
          Length = 97

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 128 SSTSADEPILMHFLVVSPQLSTVSYFVHQNKRLC 229
           S+ +A +P L HF+ V  Q       VHQ   LC
Sbjct: 10  SALAAVDPQLQHFIEVETQKQRFQQLVHQMTELC 43

>SYV_MYCMO (Q6KID2) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 839

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 13  NTLILIHGFTPY*SKHLYF 69
           N LIL+H F P+ + HLYF
Sbjct: 659 NFLILLHPFLPFLTDHLYF 677

>YNC3_YEAST (P53971) RING finger protein YNL023C|
          Length = 965

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +2

Query: 32   TASRLINLNIYISHINIFKIYCNRFSQQQRLVSSTSAD-----EPILMHFLVVSPQ 184
            T ++LIN  +  +   +     N F  Q  +  +T+ D     EP L H LVV+PQ
Sbjct: 833  TTAKLINFEVQDTEPKVEVAKKNGFLVQNLVAGNTAEDLRRFFEPHLKHTLVVNPQ 888


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,022,936
Number of Sequences: 219361
Number of extensions: 554225
Number of successful extensions: 1469
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1469
length of database: 80,573,946
effective HSP length: 66
effective length of database: 66,096,120
effective search space used: 1586306880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)