ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart10g10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ536029.1|PAM536029 Phalaenopsis amabilis microsatellite DN... 42 0.90
2gb|AC092931.8| Homo sapiens 3 BAC RP11-131O20 (Roswell Park Canc... 42 0.90
3emb|BX511260.11| Zebrafish DNA sequence from clone CH211-121A2, ... 42 0.90
4gb|AC010032.10| Drosophila melanogaster 3L BAC RP98-2N23 (Roswel... 42 0.90
5gb|AC091127.3| Drosophila melanogaster 3L BAC RP98-27E18 (Roswel... 42 0.90
6ref|NM_167852.1| Drosophila melanogaster bric a brac 1 CG9097-RB... 42 0.90
7gb|AC093795.3| Homo sapiens BAC clone RP11-299P3 from 4, complet... 42 0.90
8emb|BX255909.5| Zebrafish DNA sequence from clone CH211-235O3 in... 42 0.90
9gb|AE003470.4| Drosophila melanogaster chromosome 3L, section 4 ... 42 0.90
10emb|AL807829.21| Zebrafish DNA sequence from clone CH211-246M4 i... 42 0.90
11emb|CR555293.8| Zebrafish DNA sequence from clone DKEY-23P14 in ... 42 0.90
12gb|U06228.1|DDU06228 Dictyostelium discoideum CRAC (dagA) gene, ... 42 0.90
13emb|AJ252082.1|DME252082 Drosophila melanogaster mRNA for BAB-I ... 42 0.90
14gb|AC146546.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.5
15gb|AC146525.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.5
16gb|AC010919.11| Drosophila melanogaster clone BACR32K23, complet... 40 3.5
17ref|XM_416085.1| PREDICTED: Gallus gallus similar to Carboxypept... 40 3.5
18gb|AY249159.1| Uncultured bacterium clone T-45 ammonia monooxyge... 40 3.5
19gb|AC123830.5| Mus musculus BAC clone RP24-125B17 from chromosom... 40 3.5
20emb|CR848674.8| Zebrafish DNA sequence from clone DKEY-73G17 in ... 40 3.5
21emb|CR524827.16| Zebrafish DNA sequence from clone CH211-167H17 ... 40 3.5
22gb|AC112520.5| Mus musculus BAC clone RP23-2N4 from 12, complete... 40 3.5
23gb|AC142394.19| Medicago truncatula clone mth2-11d4, complete se... 40 3.5
24emb|AL137017.9| Human DNA sequence from clone RP11-120J1 on chro... 40 3.5
25gb|AC147435.22| Medicago truncatula clone mth2-19c18, complete s... 40 3.5
26emb|BX470244.6| Zebrafish DNA sequence from clone CH211-8G12 in ... 40 3.5
27gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, geno... 40 3.5
28emb|BX855621.15| Zebrafish DNA sequence from clone CH211-225C13,... 40 3.5
29dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5
30dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5
31gb|AC010534.7|AC010534 Homo sapiens chromosome 16 clone RP11-259... 40 3.5
32gb|AC018846.5| Homo sapiens chromosome 16 clone RP11-370P15, com... 40 3.5
33emb|BX935129.1| Gallus gallus finished cDNA, clone ChEST533b18 40 3.5
34dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5
35dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5
36dbj|AK173976.1| Ciona intestinalis cDNA, clone:ciad005f09, full ... 40 3.5
37gb|AE003500.4| Drosophila melanogaster chromosome X, section 52 ... 40 3.5
38gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.5
39ref|XM_674619.1| Plasmodium berghei strain ANKA dynactin 4 (PB00... 40 3.5 
>emb|AJ536029.1|PAM536029 Phalaenopsis amabilis microsatellite DNA, clone sc7-AG-151
          Length = 691

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 6   caaatgtaatactttaattttgatt 30
           ||||||||||| |||||||||||||
Sbjct: 437 caaatgtaatattttaattttgatt 461
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>gb|AC092931.8| Homo sapiens 3 BAC RP11-131O20 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 152737

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 46   tattaatctaaacatttatatttca 70
            ||||||| |||||||||||||||||
Sbjct: 7762 tattaatttaaacatttatatttca 7786
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>emb|BX511260.11| Zebrafish DNA sequence from clone CH211-121A2, complete sequence
          Length = 190733

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 80    atctttaaaatatattgcaat 100
             |||||||||||||||||||||
Sbjct: 58813 atctttaaaatatattgcaat 58793
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>gb|AC010032.10| Drosophila melanogaster 3L BAC RP98-2N23 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 192399

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 12     taatactttaattttgattca 32
              |||||||||||||||||||||
Sbjct: 191610 taatactttaattttgattca 191630
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>gb|AC091127.3| Drosophila melanogaster 3L BAC RP98-27E18 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 177835

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 12     taatactttaattttgattca 32
              |||||||||||||||||||||
Sbjct: 109119 taatactttaattttgattca 109139
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>ref|NM_167852.1| Drosophila melanogaster bric a brac 1 CG9097-RB, transcript variant B
            (bab1), mRNA
          Length = 4964

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 12   taatactttaattttgattca 32
            |||||||||||||||||||||
Sbjct: 3594 taatactttaattttgattca 3574
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>gb|AC093795.3| Homo sapiens BAC clone RP11-299P3 from 4, complete sequence
          Length = 183917

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 46     tattaatctaaacatttatatttca 70
              ||||||| |||||||||||||||||
Sbjct: 122186 tattaatttaaacatttatatttca 122162
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>emb|BX255909.5| Zebrafish DNA sequence from clone CH211-235O3 in linkage group 19,
              complete sequence
          Length = 180994

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 80     atctttaaaatatattgcaat 100
              |||||||||||||||||||||
Sbjct: 120109 atctttaaaatatattgcaat 120129
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>gb|AE003470.4| Drosophila melanogaster chromosome 3L, section 4 of 83 of the complete
              sequence
          Length = 318699

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 12     taatactttaattttgattca 32
              |||||||||||||||||||||
Sbjct: 123766 taatactttaattttgattca 123786
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>emb|AL807829.21| Zebrafish DNA sequence from clone CH211-246M4 in linkage group 9,
            complete sequence
          Length = 166114

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 75   taaacatctttaaaatatatt 95
            |||||||||||||||||||||
Sbjct: 7178 taaacatctttaaaatatatt 7158
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>emb|CR555293.8| Zebrafish DNA sequence from clone DKEY-23P14 in linkage group 11,
             complete sequence
          Length = 220631

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 48    ttaatctaaacatttatattt 68
             |||||||||||||||||||||
Sbjct: 66523 ttaatctaaacatttatattt 66543
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>gb|U06228.1|DDU06228 Dictyostelium discoideum CRAC (dagA) gene, complete cds
          Length = 2695

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 1   acaatcaaatgtaatactttaattt 25
           ||||||||||||||| |||||||||
Sbjct: 214 acaatcaaatgtaatgctttaattt 190
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>emb|AJ252082.1|DME252082 Drosophila melanogaster mRNA for BAB-I protein (bab-I gene)
          Length = 4967

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 12   taatactttaattttgattca 32
            |||||||||||||||||||||
Sbjct: 3598 taatactttaattttgattca 3578
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>gb|AC146546.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062M03
              map near S6115, complete sequence
          Length = 138223

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 55     aaacatttatatttcacacataaa 78
              |||||||||||| |||||||||||
Sbjct: 119347 aaacatttatatatcacacataaa 119370
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>gb|AC146525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0060D22
              map near S6115, complete sequence
          Length = 139929

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 55     aaacatttatatttcacacataaa 78
              |||||||||||| |||||||||||
Sbjct: 111497 aaacatttatatatcacacataaa 111474
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>gb|AC010919.11| Drosophila melanogaster clone BACR32K23, complete sequence
          Length = 198967

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   cctctgcacctgtatgtacg 242
             ||||||||||||||||||||
Sbjct: 68232 cctctgcacctgtatgtacg 68251
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>ref|XM_416085.1| PREDICTED: Gallus gallus similar to Carboxypeptidase M precursor
            (LOC417843), mRNA
          Length = 2520

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 1    acaatcaaatgtaatactttaatt 24
            |||||||||||| |||||||||||
Sbjct: 1487 acaatcaaatgttatactttaatt 1510
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>gb|AY249159.1| Uncultured bacterium clone T-45 ammonia monooxygenase (amoA) gene,
           partial cds
          Length = 417

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 228 gcacctgtatgtacgtactg 247
           ||||||||||||||||||||
Sbjct: 204 gcacctgtatgtacgtactg 223
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>gb|AC123830.5| Mus musculus BAC clone RP24-125B17 from chromosome 7, complete sequence
          Length = 186045

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    acacataaacatctttaaaa 89
             ||||||||||||||||||||
Sbjct: 72442 acacataaacatctttaaaa 72423
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>emb|CR848674.8| Zebrafish DNA sequence from clone DKEY-73G17 in linkage group 16,
             complete sequence
          Length = 149652

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    acacataaacatctttaaaa 89
             ||||||||||||||||||||
Sbjct: 79952 acacataaacatctttaaaa 79971
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>emb|CR524827.16| Zebrafish DNA sequence from clone CH211-167H17 in linkage group 16,
            complete sequence
          Length = 153848

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 70   acacataaacatctttaaaa 89
            ||||||||||||||||||||
Sbjct: 5874 acacataaacatctttaaaa 5893
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>gb|AC112520.5| Mus musculus BAC clone RP23-2N4 from 12, complete sequence
          Length = 233153

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     aatactttaattttgattca 32
              ||||||||||||||||||||
Sbjct: 178015 aatactttaattttgattca 178034
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>gb|AC142394.19| Medicago truncatula clone mth2-11d4, complete sequence
          Length = 111262

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 37    ttcacgccttattaatctaaacatttat 64
             |||||||||||||||||| ||| |||||
Sbjct: 45458 ttcacgccttattaatctcaacttttat 45485
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>emb|AL137017.9| Human DNA sequence from clone RP11-120J1 on chromosome 9 Contains the
             3' end of a novel gene and a CpG island, complete sequence
          Length = 167585

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    cacacataaacatctttaaa 88
             ||||||||||||||||||||
Sbjct: 20537 cacacataaacatctttaaa 20556
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>gb|AC147435.22| Medicago truncatula clone mth2-19c18, complete sequence
          Length = 137284

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 37    ttcacgccttattaatctaaacatttat 64
             |||||||||||||||||| ||| |||||
Sbjct: 35792 ttcacgccttattaatctcaacttttat 35819
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>emb|BX470244.6| Zebrafish DNA sequence from clone CH211-8G12 in linkage group 21,
              complete sequence
          Length = 200867

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      aaatgtaatactttaatttt 26
              ||||||||||||||||||||
Sbjct: 164194 aaatgtaatactttaatttt 164213
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>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence
          Length = 190469

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     aaatatattgcaatcgattc 106
              ||||||||||||||||||||
Sbjct: 177851 aaatatattgcaatcgattc 177832
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>emb|BX855621.15| Zebrafish DNA sequence from clone CH211-225C13, complete sequence
          Length = 178447

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     aaacatctttaaaatatatt 95
              ||||||||||||||||||||
Sbjct: 177366 aaacatctttaaaatatatt 177347
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 55       aaacatttatatttcacacataaa 78
                |||||||||||| |||||||||||
Sbjct: 12264000 aaacatttatatatcacacataaa 12264023
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 91       atattgcaatcgattctcac 110
                ||||||||||||||||||||
Sbjct: 29745597 atattgcaatcgattctcac 29745578
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>gb|AC010534.7|AC010534 Homo sapiens chromosome 16 clone RP11-259E8, complete sequence
          Length = 146385

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 59     atttatatttcacacataaacatctttaaaat 90
              ||||||||||||||||||| || ||| |||||
Sbjct: 142429 atttatatttcacacataagcaacttcaaaat 142460
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>gb|AC018846.5| Homo sapiens chromosome 16 clone RP11-370P15, complete sequence
          Length = 175519

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 59     atttatatttcacacataaacatctttaaaat 90
              ||||||||||||||||||| || ||| |||||
Sbjct: 152029 atttatatttcacacataagcaacttcaaaat 151998
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>emb|BX935129.1| Gallus gallus finished cDNA, clone ChEST533b18
          Length = 921

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 1   acaatcaaatgtaatactttaatt 24
           |||||||||||| |||||||||||
Sbjct: 650 acaatcaaatgttatactttaatt 673
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>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ2056_H01
          Length = 123428

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 91   atattgcaatcgattctcac 110
            ||||||||||||||||||||
Sbjct: 1942 atattgcaatcgattctcac 1923
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>dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1191_G08
          Length = 172832

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     atattgcaatcgattctcac 110
              ||||||||||||||||||||
Sbjct: 114576 atattgcaatcgattctcac 114557
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>dbj|AK173976.1| Ciona intestinalis cDNA, clone:ciad005f09, full insert sequence
          Length = 498

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 49  taatctaaacatttatattt 68
           ||||||||||||||||||||
Sbjct: 306 taatctaaacatttatattt 325
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>gb|AE003500.4| Drosophila melanogaster chromosome X, section 52 of 74 of the complete
              sequence
          Length = 303344

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 223    cctctgcacctgtatgtacg 242
              ||||||||||||||||||||
Sbjct: 236146 cctctgcacctgtatgtacg 236165
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 55       aaacatttatatttcacacataaa 78
                |||||||||||| |||||||||||
Sbjct: 12343307 aaacatttatatatcacacataaa 12343330
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>ref|XM_674619.1| Plasmodium berghei strain ANKA dynactin 4 (PB000986.01.0), partial
           mRNA
          Length = 663

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  aaaatatattgcaatcgatt 105
           ||||||||||||||||||||
Sbjct: 12  aaaatatattgcaatcgatt 31


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,849,924
Number of Sequences: 3902068
Number of extensions: 2849924
Number of successful extensions: 66767
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66643
Number of HSP's gapped (non-prelim): 124
length of query: 272
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 250
effective length of database: 17,147,199,772
effective search space: 4286799943000
effective search space used: 4286799943000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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