ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart10g09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479304.1| Oryza sativa (japonica cultivar-group), mRNA 105 1e-19
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
3dbj|AP003765.5| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
4dbj|AP004671.2| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
5dbj|AK058442.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
6ref|NM_196310.1| Oryza sativa (japonica cultivar-group) putative... 48 0.026
7gb|AC091734.3| Genomic Sequence for Oryza sativa, Nipponbare str... 48 0.026
8gb|AC092388.5| Oryza sativa chromosome 10 BAC OSJNBa0011L09 geno... 48 0.026
9dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.026
10dbj|AK108245.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.026
11gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 48 0.026
12emb|BX649535.7| Zebrafish DNA sequence from clone DKEY-234E12 in... 46 0.10
13ref|XM_470569.1| Oryza sativa (japonica cultivar-group), predic... 44 0.41
14gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.41
15emb|AL136136.7| Human DNA sequence from clone RP11-141E20 on chr... 44 0.41
16gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nippon... 44 0.41
17dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.41
18gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.41
19dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.41
20dbj|AK120569.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.41
21dbj|AK119613.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.41
22ref|XM_467865.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.6
23ref|XM_506981.1| PREDICTED Oryza sativa (japonica cultivar-group... 42 1.6
24emb|X75026.1|DMRNACE D.melanogaster mRNA for cyclin E type I 42 1.6
25ref|NM_165125.2| Drosophila melanogaster Cyclin E CG3938-RE, tra... 42 1.6
26ref|NM_165124.2| Drosophila melanogaster Cyclin E CG3938-RD, tra... 42 1.6
27ref|NM_165123.2| Drosophila melanogaster Cyclin E CG3938-RC, tra... 42 1.6
28ref|NM_057612.4| Drosophila melanogaster Cyclin E CG3938-RB, tra... 42 1.6
29ref|NM_057611.4| Drosophila melanogaster Cyclin E CG3938-RA, tra... 42 1.6
30gb|AY061233.1| Drosophila melanogaster LD17578 full length cDNA 42 1.6
31emb|BX682233.6| Zebrafish DNA sequence from clone CH211-177P5 in... 42 1.6
32dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
33gb|AC104172.5| Homo sapiens BAC clone RP11-575G3 from 2, complet... 42 1.6
34gb|AY069507.2| Drosophila melanogaster LD22682 full insert cDNA 42 1.6
35gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.6
36dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
37emb|AL844887.10| Zebrafish DNA sequence from clone DKEY-66C10, c... 42 1.6
38dbj|AK106639.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
39dbj|AK064105.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
40gb|AE003648.2| Drosophila melanogaster chromosome 2L, section 57... 42 1.6
41emb|AL954832.12| Zebrafish DNA sequence from clone DKEY-15O4, co... 42 1.6
42gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
43ref|XM_869493.1| PREDICTED: Bos taurus hypothetical protein LOC6... 40 6.4
44gb|AC124836.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
45gb|AC148311.2| Pan troglodytes BAC clone RP43-29P9 from 7, compl... 40 6.4
46gb|AC087232.2| Caenorhabditis elegans cosmid Y92H12BR, complete ... 40 6.4
47gb|AC073273.9| Homo sapiens BAC clone RP11-643A21 from 7, comple... 40 6.4
48ref|XM_537946.2| PREDICTED: Canis familiaris similar to tubulin,... 40 6.4
49gb|AC146511.3| Pan troglodytes BAC clone RP43-72N15 from 7, comp... 40 6.4
50gb|AC149293.21| Medicago truncatula clone mth2-78c5, complete se... 40 6.4
51gb|AC147780.10| Medicago truncatula clone mth2-36n9, complete se... 40 6.4
52emb|BX005072.20| Human DNA sequence from clone XXyac-59F3 on chr... 40 6.4
53emb|AL450334.15| Human DNA sequence from clone RP11-556L1 on chr... 40 6.4
54gb|AC101941.11| Mus musculus chromosome 7, clone RP24-112F21, co... 40 6.4
55gb|AC124657.5| Homo sapiens chromosome 11, clone RP11-624D11, co... 40 6.4
56dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 6.4
57gb|AC013284.9| Homo sapiens chromosome 10 clone RP11-13E1, compl... 40 6.4
58gb|AC026739.7| Homo sapiens chromosome 5 clone CTD-2580L4, compl... 40 6.4
59gb|AC021233.9| Homo sapiens chromosome 11, clone RP11-215H22, co... 40 6.4
60gb|AC026708.6| Homo sapiens chromosome 5 clone CTD-2078B5, compl... 40 6.4
61gb|AY123703.1| Gemella morbillorum strain ATCC 27824 Cpn60 (cpn6... 40 6.4
62gb|BC109693.1| Bos taurus cDNA clone MGC:134403 IMAGE:8059952, c... 40 6.4
63ref|NM_001037902.1| Caenorhabditis elegans Y92H12BR.3b (Y92H12BR... 40 6.4
64ref|NM_001037901.1| Caenorhabditis elegans Y92H12BR.3a (Y92H12BR... 40 6.4
65dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
66dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
67gb|AC091167.19| Homo sapiens chromosome 15, clone RP11-697E2, co... 40 6.4
68dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 6.4
69dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 6.4
70dbj|AP004862.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
71gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 6.4 
>ref|XM_479304.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1283

 Score =  105 bits (53), Expect = 1e-19
 Identities = 83/93 (89%)
 Strand = Plus / Minus

                                                                        
Query: 117  gcatgtggacatgatgggcggcgcggcgaacgggccgtcgagcaccccgcgggccatgat 176
            |||| ||||||||||||||||  |||||||||||||||||||||| ||||| ||||||||
Sbjct: 1201 gcatctggacatgatgggcgggtcggcgaacgggccgtcgagcacgccgcgcgccatgat 1142

                                             
Query: 177  cttgtacgcggcctctgtcatgtgcaggccgtc 209
            |  |||| | ||||| |||||||||||||||||
Sbjct: 1141 ccggtacaccgcctccgtcatgtgcaggccgtc 1109



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 441 gtcgttgagccaccggaggcagcccgtggc 470
           ||||||||||| ||||||||||||||||||
Sbjct: 850 gtcgttgagcccccggaggcagcccgtggc 821
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  105 bits (53), Expect = 1e-19
 Identities = 83/93 (89%)
 Strand = Plus / Plus

                                                                            
Query: 117      gcatgtggacatgatgggcggcgcggcgaacgggccgtcgagcaccccgcgggccatgat 176
                |||| ||||||||||||||||  |||||||||||||||||||||| ||||| ||||||||
Sbjct: 26674140 gcatctggacatgatgggcgggtcggcgaacgggccgtcgagcacgccgcgcgccatgat 26674199

                                                 
Query: 177      cttgtacgcggcctctgtcatgtgcaggccgtc 209
                |  |||| | ||||| |||||||||||||||||
Sbjct: 26674200 ccggtacaccgcctccgtcatgtgcaggccgtc 26674232



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                              
Query: 441      gtcgttgagccaccggaggcagcccgtggc 470
                ||||||||||| ||||||||||||||||||
Sbjct: 26674491 gtcgttgagcccccggaggcagcccgtggc 26674520
to top
>dbj|AP003765.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1003_C06
          Length = 143168

 Score =  105 bits (53), Expect = 1e-19
 Identities = 83/93 (89%)
 Strand = Plus / Plus

                                                                         
Query: 117   gcatgtggacatgatgggcggcgcggcgaacgggccgtcgagcaccccgcgggccatgat 176
             |||| ||||||||||||||||  |||||||||||||||||||||| ||||| ||||||||
Sbjct: 20997 gcatctggacatgatgggcgggtcggcgaacgggccgtcgagcacgccgcgcgccatgat 21056

                                              
Query: 177   cttgtacgcggcctctgtcatgtgcaggccgtc 209
             |  |||| | ||||| |||||||||||||||||
Sbjct: 21057 ccggtacaccgcctccgtcatgtgcaggccgtc 21089



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 441   gtcgttgagccaccggaggcagcccgtggc 470
             ||||||||||| ||||||||||||||||||
Sbjct: 21348 gtcgttgagcccccggaggcagcccgtggc 21377
to top
>dbj|AP004671.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0524G08
          Length = 146690

 Score =  105 bits (53), Expect = 1e-19
 Identities = 83/93 (89%)
 Strand = Plus / Plus

                                                                         
Query: 117   gcatgtggacatgatgggcggcgcggcgaacgggccgtcgagcaccccgcgggccatgat 176
             |||| ||||||||||||||||  |||||||||||||||||||||| ||||| ||||||||
Sbjct: 91744 gcatctggacatgatgggcgggtcggcgaacgggccgtcgagcacgccgcgcgccatgat 91803

                                              
Query: 177   cttgtacgcggcctctgtcatgtgcaggccgtc 209
             |  |||| | ||||| |||||||||||||||||
Sbjct: 91804 ccggtacaccgcctccgtcatgtgcaggccgtc 91836



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 441   gtcgttgagccaccggaggcagcccgtggc 470
             ||||||||||| ||||||||||||||||||
Sbjct: 92095 gtcgttgagcccccggaggcagcccgtggc 92124
to top
>dbj|AK058442.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-G02, full
            insert sequence
          Length = 1283

 Score =  105 bits (53), Expect = 1e-19
 Identities = 83/93 (89%)
 Strand = Plus / Minus

                                                                        
Query: 117  gcatgtggacatgatgggcggcgcggcgaacgggccgtcgagcaccccgcgggccatgat 176
            |||| ||||||||||||||||  |||||||||||||||||||||| ||||| ||||||||
Sbjct: 1201 gcatctggacatgatgggcgggtcggcgaacgggccgtcgagcacgccgcgcgccatgat 1142

                                             
Query: 177  cttgtacgcggcctctgtcatgtgcaggccgtc 209
            |  |||| | ||||| |||||||||||||||||
Sbjct: 1141 ccggtacaccgcctccgtcatgtgcaggccgtc 1109



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 441 gtcgttgagccaccggaggcagcccgtggc 470
           ||||||||||| ||||||||||||||||||
Sbjct: 850 gtcgttgagcccccggaggcagcccgtggc 821
to top
>ref|NM_196310.1| Oryza sativa (japonica cultivar-group) putative lipase
            (OSJNBa0068A07.21), mRNA
          Length = 1206

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 198  gtgcaggccgtcaaacgacacgtacgtcgacgggtccgggcacg 241
            ||||| ||||||  |||||||||||| ||||||||||| |||||
Sbjct: 1068 gtgcacgccgtcccacgacacgtacgccgacgggtccgcgcacg 1025
to top
>gb|AC091734.3| Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0068A07, from Chromosome 10, complete sequence
          Length = 154505

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                          
Query: 198    gtgcaggccgtcaaacgacacgtacgtcgacgggtccgggcacg 241
              ||||| ||||||  |||||||||||| ||||||||||| |||||
Sbjct: 137770 gtgcacgccgtcccacgacacgtacgccgacgggtccgcgcacg 137727
to top
>gb|AC092388.5| Oryza sativa chromosome 10 BAC OSJNBa0011L09 genomic sequence, complete
              sequence
          Length = 177565

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                          
Query: 198    gtgcaggccgtcaaacgacacgtacgtcgacgggtccgggcacg 241
              ||||| ||||||  |||||||||||| ||||||||||| |||||
Sbjct: 145879 gtgcacgccgtcccacgacacgtacgccgacgggtccgcgcacg 145922
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                            
Query: 198      gtgcaggccgtcaaacgacacgtacgtcgacgggtccgggcacg 241
                ||||| ||||||  |||||||||||| ||||||||||| |||||
Sbjct: 12617683 gtgcacgccgtcccacgacacgtacgccgacgggtccgcgcacg 12617640
to top
>dbj|AK108245.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-H05, full
            insert sequence
          Length = 1472

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 198  gtgcaggccgtcaaacgacacgtacgtcgacgggtccgggcacg 241
            ||||| ||||||  |||||||||||| ||||||||||| |||||
Sbjct: 1131 gtgcacgccgtcccacgacacgtacgccgacgggtccgcgcacg 1088
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                            
Query: 198      gtgcaggccgtcaaacgacacgtacgtcgacgggtccgggcacg 241
                ||||| ||||||  |||||||||||| ||||||||||| |||||
Sbjct: 12625023 gtgcacgccgtcccacgacacgtacgccgacgggtccgcgcacg 12624980
to top
>emb|BX649535.7| Zebrafish DNA sequence from clone DKEY-234E12 in linkage group 3,
             complete sequence
          Length = 151079

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 2     aaatcaaatgctgattttattttttgc 28
             ||||||||||||| |||||||||||||
Sbjct: 59359 aaatcaaatgctgtttttattttttgc 59385
to top
>ref|XM_470569.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1845

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 419  tgtggttgtggaggaggacgaggtcg 444
            |||||| |||||||||||||||||||
Sbjct: 1087 tgtggtcgtggaggaggacgaggtcg 1062
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 419     tgtggttgtggaggaggacgaggtcg 444
               |||||| |||||||||||||||||||
Sbjct: 4414682 tgtggtcgtggaggaggacgaggtcg 4414657
to top
>emb|AL136136.7| Human DNA sequence from clone RP11-141E20 on chromosome 1q31.2-31.3
              Contains GSSs and STSs, complete sequence
          Length = 146158

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 5      tcaaatgctgattttatttttt 26
              ||||||||||||||||||||||
Sbjct: 108075 tcaaatgctgattttatttttt 108054
to top
>gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0032G08, from Chromosome 3, complete sequence
          Length = 122052

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 419   tgtggttgtggaggaggacgaggtcg 444
             |||||| |||||||||||||||||||
Sbjct: 11815 tgtggtcgtggaggaggacgaggtcg 11840
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 419     tgtggttgtggaggaggacgaggtcg 444
               |||||| |||||||||||||||||||
Sbjct: 4414797 tgtggtcgtggaggaggacgaggtcg 4414772
to top
>gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0042J17, complete sequence
          Length = 171442

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 419   tgtggttgtggaggaggacgaggtcg 444
             |||||| |||||||||||||||||||
Sbjct: 19974 tgtggtcgtggaggaggacgaggtcg 19949
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 132     gggcggcgcggcgaacgggccg 153
               ||||||||||||||||||||||
Sbjct: 4420263 gggcggcgcggcgaacgggccg 4420242



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 277     cacgccttcagcacggtctcc 297
               |||||||||||||||||||||
Sbjct: 3256576 cacgccttcagcacggtctcc 3256556
to top
>dbj|AK120569.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134B09, full
            insert sequence
          Length = 2342

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 419  tgtggttgtggaggaggacgaggtcg 444
            |||||| |||||||||||||||||||
Sbjct: 1191 tgtggtcgtggaggaggacgaggtcg 1166
to top
>dbj|AK119613.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-G04, full
            insert sequence
          Length = 2160

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 419  tgtggttgtggaggaggacgaggtcg 444
            |||||| |||||||||||||||||||
Sbjct: 1174 tgtggtcgtggaggaggacgaggtcg 1149
to top
>ref|XM_467865.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1662

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 448 agccaccggaggcagcccgtg 468
           |||||||||||||||||||||
Sbjct: 926 agccaccggaggcagcccgtg 906
to top
>ref|XM_506981.1| PREDICTED Oryza sativa (japonica cultivar-group), P0627E03.27 mRNA
          Length = 2591

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 448 agccaccggaggcagcccgtg 468
           |||||||||||||||||||||
Sbjct: 923 agccaccggaggcagcccgtg 903
to top
>emb|X75026.1|DMRNACE D.melanogaster mRNA for cyclin E type I
          Length = 3900

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 414  cagcatgtggttgtggaggag 434
            |||||||||||||||||||||
Sbjct: 2468 cagcatgtggttgtggaggag 2448
to top
>ref|NM_165125.2| Drosophila melanogaster Cyclin E CG3938-RE, transcript variant E
            (CycE), mRNA
          Length = 3505

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 414  cagcatgtggttgtggaggag 434
            |||||||||||||||||||||
Sbjct: 2326 cagcatgtggttgtggaggag 2306
to top
>ref|NM_165124.2| Drosophila melanogaster Cyclin E CG3938-RD, transcript variant D
            (CycE), mRNA
          Length = 3742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 414  cagcatgtggttgtggaggag 434
            |||||||||||||||||||||
Sbjct: 2563 cagcatgtggttgtggaggag 2543
to top
>ref|NM_165123.2| Drosophila melanogaster Cyclin E CG3938-RC, transcript variant C
            (CycE), mRNA
          Length = 3512

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 414  cagcatgtggttgtggaggag 434
            |||||||||||||||||||||
Sbjct: 2311 cagcatgtggttgtggaggag 2291
to top
>ref|NM_057612.4| Drosophila melanogaster Cyclin E CG3938-RB, transcript variant B
            (CycE), mRNA
          Length = 3649

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 414  cagcatgtggttgtggaggag 434
            |||||||||||||||||||||
Sbjct: 2470 cagcatgtggttgtggaggag 2450
to top
>ref|NM_057611.4| Drosophila melanogaster Cyclin E CG3938-RA, transcript variant A
            (CycE), mRNA
          Length = 3658

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 414  cagcatgtggttgtggaggag 434
            |||||||||||||||||||||
Sbjct: 2479 cagcatgtggttgtggaggag 2459
to top
>gb|AY061233.1| Drosophila melanogaster LD17578 full length cDNA
          Length = 1948

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 414  cagcatgtggttgtggaggag 434
            |||||||||||||||||||||
Sbjct: 1594 cagcatgtggttgtggaggag 1574
to top
>emb|BX682233.6| Zebrafish DNA sequence from clone CH211-177P5 in linkage group 16,
             complete sequence
          Length = 145536

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 3     aatcaaatgctgattttattt 23
             |||||||||||||||||||||
Sbjct: 24626 aatcaaatgctgattttattt 24606
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 448      agccaccggaggcagcccgtg 468
                |||||||||||||||||||||
Sbjct: 31811171 agccaccggaggcagcccgtg 31811191
to top
>gb|AC104172.5| Homo sapiens BAC clone RP11-575G3 from 2, complete sequence
          Length = 54079

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 2     aaatcaaatgctgattttatt 22
             |||||||||||||||||||||
Sbjct: 30094 aaatcaaatgctgattttatt 30114
to top
>gb|AY069507.2| Drosophila melanogaster LD22682 full insert cDNA
          Length = 3514

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 414  cagcatgtggttgtggaggag 434
            |||||||||||||||||||||
Sbjct: 2314 cagcatgtggttgtggaggag 2294
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 140     cggcgaacgggccgtcgagca 160
               |||||||||||||||||||||
Sbjct: 3813790 cggcgaacgggccgtcgagca 3813770
to top
>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0627E03
          Length = 159861

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 448    agccaccggaggcagcccgtg 468
              |||||||||||||||||||||
Sbjct: 106969 agccaccggaggcagcccgtg 106989
to top
>emb|AL844887.10| Zebrafish DNA sequence from clone DKEY-66C10, complete sequence
          Length = 243870

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 3    aatcaaatgctgattttattt 23
            |||||||||||||||||||||
Sbjct: 2453 aatcaaatgctgattttattt 2433
to top
>dbj|AK106639.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-E02, full
           insert sequence
          Length = 2591

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 448 agccaccggaggcagcccgtg 468
           |||||||||||||||||||||
Sbjct: 923 agccaccggaggcagcccgtg 903
to top
>dbj|AK064105.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-D08, full
           insert sequence
          Length = 1662

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 448 agccaccggaggcagcccgtg 468
           |||||||||||||||||||||
Sbjct: 926 agccaccggaggcagcccgtg 906
to top
>gb|AE003648.2| Drosophila melanogaster chromosome 2L, section 57 of 83 of the complete
              sequence
          Length = 284900

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 414    cagcatgtggttgtggaggag 434
              |||||||||||||||||||||
Sbjct: 201506 cagcatgtggttgtggaggag 201526
to top
>emb|AL954832.12| Zebrafish DNA sequence from clone DKEY-15O4, complete sequence
          Length = 256126

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 3      aatcaaatgctgattttattt 23
              |||||||||||||||||||||
Sbjct: 193387 aatcaaatgctgattttattt 193367
to top
>gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0426G01,
              complete sequence
          Length = 173074

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 379    gggtggtcgcggcgcagctcctcgagct 406
              ||||||||||||||||| ||| ||||||
Sbjct: 128959 gggtggtcgcggcgcaggtccacgagct 128986
to top
>ref|XM_869493.1| PREDICTED: Bos taurus hypothetical protein LOC617266 (LOC617266),
           mRNA
          Length = 539

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 144 gaacgggccgtcgagcaccccgcg 167
           ||||||||| ||||||||||||||
Sbjct: 251 gaacgggccctcgagcaccccgcg 228
to top
>gb|AC124836.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
           OSJNBb0092E21, complete sequence
          Length = 132649

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 379 gggtggtcgcggcgcagctcctcgagct 406
           ||||||||||||||||| ||| ||||||
Sbjct: 693 gggtggtcgcggcgcaggtccacgagct 720
to top
>gb|AC148311.2| Pan troglodytes BAC clone RP43-29P9 from 7, complete sequence
          Length = 161683

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 2      aaatcaaatgctgattttattttt 25
              |||||| |||||||||||||||||
Sbjct: 114044 aaatcacatgctgattttattttt 114021
to top
>gb|AC087232.2| Caenorhabditis elegans cosmid Y92H12BR, complete sequence
          Length = 49623

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   gatgaaggcgagcacgtcgt 346
             ||||||||||||||||||||
Sbjct: 25141 gatgaaggcgagcacgtcgt 25160
to top
>gb|AC073273.9| Homo sapiens BAC clone RP11-643A21 from 7, complete sequence
          Length = 152884

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 2     aaatcaaatgctgattttattttt 25
             |||||| |||||||||||||||||
Sbjct: 53919 aaatcacatgctgattttattttt 53896
to top
>ref|XM_537946.2| PREDICTED: Canis familiaris similar to tubulin, gamma complex
           associated protein 2 (LOC480829), mRNA
          Length = 2611

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 391 cgcagctcctcgagcttggc 410
           ||||||||||||||||||||
Sbjct: 116 cgcagctcctcgagcttggc 97
to top
>gb|AC146511.3| Pan troglodytes BAC clone RP43-72N15 from 7, complete sequence
          Length = 192395

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     aaatcaaatgctgattttattttt 25
             |||||| |||||||||||||||||
Sbjct: 64316 aaatcacatgctgattttattttt 64339
to top
>gb|AC149293.21| Medicago truncatula clone mth2-78c5, complete sequence
          Length = 111412

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     aaatgctgattttatttttt 26
             ||||||||||||||||||||
Sbjct: 93773 aaatgctgattttatttttt 93754
to top
>gb|AC147780.10| Medicago truncatula clone mth2-36n9, complete sequence
          Length = 102831

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     aaatgctgattttatttttt 26
             ||||||||||||||||||||
Sbjct: 57211 aaatgctgattttatttttt 57192
to top
>emb|BX005072.20| Human DNA sequence from clone XXyac-59F3 on chromosome 10 Contains the
             5' end of a novel gene, a novel gene (MGC35285) and a CpG
             island, complete sequence
          Length = 97407

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   ttgcatgtggacatgatggg 134
             ||||||||||||||||||||
Sbjct: 57187 ttgcatgtggacatgatggg 57206
to top
>emb|AL450334.15| Human DNA sequence from clone RP11-556L1 on chromosome 10 Contains gene
             DKFZP566K0524, the gene for a novel protein similar to
             tyrosine phosphatase (MGC35285), the 3' end of a KIAA0187
             pseudogene, the 3' end of a novel gene, the gene for a
             novel protein similar to ARF GTPase-activating protein
             (MRIP2) and a CpG island, complete sequence
          Length = 171930

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   ttgcatgtggacatgatggg 134
             ||||||||||||||||||||
Sbjct: 76726 ttgcatgtggacatgatggg 76745
to top
>gb|AC101941.11| Mus musculus chromosome 7, clone RP24-112F21, complete sequence
          Length = 157117

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     aaatgctgattttatttttt 26
             ||||||||||||||||||||
Sbjct: 98325 aaatgctgattttatttttt 98344
to top
>gb|AC124657.5| Homo sapiens chromosome 11, clone RP11-624D11, complete sequence
          Length = 155985

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      aaatgctgattttatttttt 26
              ||||||||||||||||||||
Sbjct: 141143 aaatgctgattttatttttt 141162
to top
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 315    cgccggcttggtgatgaagg 334
              ||||||||||||||||||||
Sbjct: 490340 cgccggcttggtgatgaagg 490359
to top
>gb|AC013284.9| Homo sapiens chromosome 10 clone RP11-13E1, complete sequence
          Length = 154259

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   ttgcatgtggacatgatggg 134
             ||||||||||||||||||||
Sbjct: 84997 ttgcatgtggacatgatggg 84978
to top
>gb|AC026739.7| Homo sapiens chromosome 5 clone CTD-2580L4, complete sequence
          Length = 186308

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   ttgcatgtggacatgatggg 134
             ||||||||||||||||||||
Sbjct: 74109 ttgcatgtggacatgatggg 74128
to top
>gb|AC021233.9| Homo sapiens chromosome 11, clone RP11-215H22, complete sequence
          Length = 159641

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      aaatgctgattttatttttt 26
              ||||||||||||||||||||
Sbjct: 156355 aaatgctgattttatttttt 156336
to top
>gb|AC026708.6| Homo sapiens chromosome 5 clone CTD-2078B5, complete sequence
          Length = 142047

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     aaatcaaatgctgattttattttt 25
             ||||||||||||||||| ||||||
Sbjct: 83084 aaatcaaatgctgatttaattttt 83107
to top
>gb|AY123703.1| Gemella morbillorum strain ATCC 27824 Cpn60 (cpn60) gene, partial
           cds
          Length = 552

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 51  gtggtttggcagcagcaact 70
           ||||||||||||||||||||
Sbjct: 463 gtggtttggcagcagcaact 444
to top
>gb|BC109693.1| Bos taurus cDNA clone MGC:134403 IMAGE:8059952, complete cds
          Length = 1243

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 144 gaacgggccgtcgagcaccccgcg 167
           ||||||||| ||||||||||||||
Sbjct: 355 gaacgggccctcgagcaccccgcg 332
to top
>ref|NM_001037902.1| Caenorhabditis elegans Y92H12BR.3b (Y92H12BR.3) mRNA, complete cds
          Length = 816

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 327 gatgaaggcgagcacgtcgt 346
           ||||||||||||||||||||
Sbjct: 171 gatgaaggcgagcacgtcgt 190
to top
>ref|NM_001037901.1| Caenorhabditis elegans Y92H12BR.3a (Y92H12BR.3) mRNA, complete cds
          Length = 1914

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 327 gatgaaggcgagcacgtcgt 346
           ||||||||||||||||||||
Sbjct: 171 gatgaaggcgagcacgtcgt 190
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 52      tggtttggcagcagcaactc 71
               ||||||||||||||||||||
Sbjct: 7427594 tggtttggcagcagcaactc 7427613
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 379      gggtggtcgcggcgcagctcctcgagct 406
                ||||||||||||||||| ||| ||||||
Sbjct: 20457214 gggtggtcgcggcgcaggtccacgagct 20457241
to top
>gb|AC091167.19| Homo sapiens chromosome 15, clone RP11-697E2, complete sequence
          Length = 202381

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 420    gtggttgtggaggaggacga 439
              ||||||||||||||||||||
Sbjct: 183489 gtggttgtggaggaggacga 183508
to top
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 420     gtggttgtggaggaggacgaggtc 443
               |||||||||| |||||||||||||
Sbjct: 2121032 gtggttgtggtggaggacgaggtc 2121055
to top
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 326     tgatgaaggcgagcacgtcg 345
               ||||||||||||||||||||
Sbjct: 2324580 tgatgaaggcgagcacgtcg 2324599
to top
>dbj|AP004862.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0001B11
          Length = 166004

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     tggtttggcagcagcaactc 71
              ||||||||||||||||||||
Sbjct: 134179 tggtttggcagcagcaactc 134198
to top
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 339     cacgtcgtcgtaggtgttgacgta 362
               ||||||| ||||||||||||||||
Sbjct: 2360543 cacgtcggcgtaggtgttgacgta 2360566


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,162,723
Number of Sequences: 3902068
Number of extensions: 4162723
Number of successful extensions: 79719
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78512
Number of HSP's gapped (non-prelim): 1207
length of query: 473
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 451
effective length of database: 17,147,199,772
effective search space: 7733387097172
effective search space used: 7733387097172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top