>CCR4_YEAST (P31384) Glucose-repressible alcohol dehydrogenase transcriptional|
           effector (EC 3.1.-.-) (Cytoplasmic deadenylase) (Carbon
           catabolite repressor protein 4)
          Length = 837

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 31/71 (43%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
 Frame = -1

Query: 445 GEPEFTNCTPGFTGTLDYIFLSGDNSIKPTTLLRIPRG--GSPDVEG-----GLPNFHHP 287
           GE  FTN TP FT  +DYI+ S       T  LR+ RG  G  D E      G PN   P
Sbjct: 764 GELPFTNFTPSFTDVIDYIWFS-------THALRV-RGLLGEVDPEYESKFIGFPNDKFP 815

Query: 286 SDHLPIGADFQ 254
           SDH+P+ A F+
Sbjct: 816 SDHIPLLARFE 826

>NOCT_XENLA (P79942) Nocturnin (Rhythmic message 1) (RM1)|
          Length = 388

 Score = 32.7 bits (73), Expect = 0.54
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
 Frame = -1

Query: 442 EPEFTNCTPGFTG----TLDYIFLSGDNSIKPTTLLRIPRGGSPDVEGGLPNFHHPSDHL 275
           EP +T      TG    TLDYI+ S  ++++    L +P          LP+F++PSDHL
Sbjct: 315 EPPYTTWKIRTTGESCHTLDYIWYS-QHALRVNAALGLPTEEQIG-PNRLPSFNYPSDHL 372

Query: 274 PIGADF 257
            +  DF
Sbjct: 373 SLVCDF 378

>ADRB3_RAT (P26255) Beta-3 adrenergic receptor (Beta-3 adrenoceptor) (Beta-3|
           adrenoreceptor)
          Length = 400

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 24/71 (33%), Positives = 30/71 (42%)
 Frame = -3

Query: 350 TPNPTRGFPGCGRRPAQLPPS**SLADRRRFSAAQQLASWCLGCIFPTVAANGLRNVWPW 171
           TP  + G P CGRRPA+L P    L + R       +      C  P   AN LR +   
Sbjct: 262 TPTASDGVPSCGRRPARLLP----LGEHRALRTLGLIMGIFSLCWLPFFLANVLRALVGP 317

Query: 170 SACSLGLAIRL 138
           S    G+ I L
Sbjct: 318 SLVPSGVFIAL 328

>SORT_HUMAN (Q99523) Sortilin precursor (Neurotensin receptor 3) (NTR3) (NT3)|
           (Glycoprotein 95) (Gp95) (100 kDa NT receptor)
          Length = 831

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 20/47 (42%), Positives = 25/47 (53%)
 Frame = -1

Query: 469 RSLYAANGGEPEFTNCTPGFTGTLDYIFLSGDNSIKPTTLLRIPRGG 329
           R LY   GGE +FTN T    G      LS DNSI+  T++   +GG
Sbjct: 392 RHLYTTTGGETDFTNVT-SLRGVYITSVLSEDNSIQ--TMITFDQGG 435

>NGL1_YEAST (Q08213) RNA exonuclease NGL1 (EC 3.1.-.-)|
          Length = 363

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -1

Query: 310 GLPNFHHPSDHLPIGADFQ 254
           GLPN +HPSDH+P+  +F+
Sbjct: 343 GLPNENHPSDHIPLLTEFK 361

>NGL2_YEAST (Q03264) RNA exonuclease NGL2 (EC 3.1.-.-) (Carbon catabolite|
           repressor protein 4 homolog)
          Length = 515

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 19/83 (22%)
 Frame = -1

Query: 445 GEPEFTNCTPGFTGTLDYIF-------------------LSGDNSIKPTTLLRIPRGGSP 323
           GEPE +N    + G LDY+F                      +N +K    LR+P G   
Sbjct: 430 GEPEISNWANTWRGLLDYLFYVKKWDPQSNCQEVETLGDFEKENKVKCRGFLRMPPGNEM 489

Query: 322 DVEGGLPNFHHPSDHLPIGADFQ 254
              G      + SDHL +  D +
Sbjct: 490 TKHGQPHVGEYASDHLSMVCDLE 512

>NOCT_MOUSE (O35710) Nocturnin (CCR4 protein homolog)|
          Length = 429

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
 Frame = -1

Query: 442 EPEFTNCTPGFTG----TLDYIFLSGDNSIKPTTLLRIPRGGSPDVEGGLPNFHHPSDHL 275
           EP +T      +G    TLDYI+ S  +++  T+ L +           LP+FH+PSDHL
Sbjct: 356 EPPYTTWKIRTSGECRHTLDYIWYSR-HALSVTSALDLLTEEQIG-PNRLPSFHYPSDHL 413

Query: 274 PIGADF 257
            +  DF
Sbjct: 414 SLVCDF 419

>ADRB3_HUMAN (P13945) Beta-3 adrenergic receptor (Beta-3 adrenoceptor) (Beta-3|
           adrenoreceptor)
          Length = 408

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 19/52 (36%), Positives = 22/52 (42%)
 Frame = -3

Query: 341 PTRGFPGCGRRPAQLPPS**SLADRRRFSAAQQLASWCLGCIFPTVAANGLR 186
           P  G P CGRRPA+L P    L + R       +      C  P   AN LR
Sbjct: 268 PPEGVPACGRRPARLLP----LREHRALCTLGLIMGTFTLCWLPFFLANVLR 315

>PDR13_ARATH (Q7PC83) Probable pleiotropic drug resistance protein 13|
          Length = 1397

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -2

Query: 360  LLPYSESHEGVPRMWKEACPTSTILVITCRSA 265
            ++ Y ES  GVP++ K   P + +L ITC+SA
Sbjct: 1041 VIKYFESIPGVPKVQKNCNPATWMLDITCKSA 1072

>SORT_RAT (O54861) Sortilin precursor (Neurotensin receptor 3) (NTR3)|
           (Glycoprotein 110) (Gp110)
          Length = 825

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = -1

Query: 469 RSLYAANGGEPEFTNCTPGFTGTLDYIFLSGDNSIKPTTLLRIPRGG 329
           R LY   GGE +FTN T    G      LS DNSI+  +++   +GG
Sbjct: 390 RHLYTTTGGETDFTNVT-SLRGVYITSTLSEDNSIQ--SMITFDQGG 433

>SORT_MOUSE (Q6PHU5) Sortilin precursor (Neurotensin receptor 3) (NTR3) (mNTR3)|
          Length = 825

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = -1

Query: 469 RSLYAANGGEPEFTNCTPGFTGTLDYIFLSGDNSIKPTTLLRIPRGG 329
           R LY   GGE +FTN T    G      LS DNSI+  +++   +GG
Sbjct: 390 RHLYTTTGGETDFTNVT-SLRGVYITSTLSEDNSIQ--SMITFDQGG 433

>ADRB3_MOUSE (P25962) Beta-3 adrenergic receptor (Beta-3 adrenoceptor) (Beta-3|
           adrenoreceptor)
          Length = 400

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 24/71 (33%), Positives = 29/71 (40%)
 Frame = -3

Query: 350 TPNPTRGFPGCGRRPAQLPPS**SLADRRRFSAAQQLASWCLGCIFPTVAANGLRNVWPW 171
           TP    G P CGRRPA+L P    L + R       +      C  P   AN LR +   
Sbjct: 262 TPAAPDGVPPCGRRPARLLP----LREHRALRTLGLIMGIFSLCWLPFFLANVLRALAGP 317

Query: 170 SACSLGLAIRL 138
           S    G+ I L
Sbjct: 318 SLVPSGVFIAL 328

>ANGE1_HUMAN (Q9UNK9) Angel homolog 1|
          Length = 670

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 15/78 (19%)
 Frame = -1

Query: 445 GEPEFTNCTPGFTGTLDYIFLSGDNSIKPT-TLLRIPRGGSPDVEG-------------- 311
           G PE T    G   T+DYIF S ++      T  R+ R G+  + G              
Sbjct: 586 GRPEVTTMPLGLGMTVDYIFFSAESCENGNRTDHRLYRDGTLKLLGRLSLLSEEILWAAN 645

Query: 310 GLPNFHHPSDHLPIGADF 257
           GLPN    SDHL + A F
Sbjct: 646 GLPNPFCSSDHLCLLASF 663

>NOCT_HUMAN (Q9UK39) Nocturnin (CCR4 protein homolog)|
          Length = 431

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
 Frame = -1

Query: 463 LYAANG-GEPEFTNCTPGFTG----TLDYIFLSGD--NSIKPTTLLRIPRGGSPDVEGGL 305
           L +A+G  EP +T      +G    TLDYI+ S    N      LL   + G       L
Sbjct: 350 LLSADGQSEPPYTTWKIRTSGECRHTLDYIWYSKHALNVRSALDLLTEEQIGP----NRL 405

Query: 304 PNFHHPSDHLPIGADF 257
           P+F++PSDHL +  DF
Sbjct: 406 PSFNYPSDHLSLVCDF 421

>RPOC_BUCBP (Q89B21) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1404

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 5/30 (16%)
 Frame = -1

Query: 376  DNSIKPT---TLLRIPR--GGSPDVEGGLP 302
            DNSIK +   TL RIP+  GG+ D+ GGLP
Sbjct: 1110 DNSIKISSGDTLARIPQESGGTKDITGGLP 1139

>PYRI_NEIMB (Q9K1K9) Aspartate carbamoyltransferase regulatory chain|
          Length = 152

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
 Frame = +1

Query: 76  IKCQFLLKKHNGQ---KLHYC 129
           +K +F +KKHNGQ   K HYC
Sbjct: 120 VKSRFYVKKHNGQTRLKCHYC 140

>PYRI_NEIMA (Q9JWY6) Aspartate carbamoyltransferase regulatory chain|
          Length = 152

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
 Frame = +1

Query: 76  IKCQFLLKKHNGQ---KLHYC 129
           +K +F +KKHNGQ   K HYC
Sbjct: 120 VKSRFYVKKHNGQTRLKCHYC 140

>GLI4_XENLA (Q91661) Zinc finger protein GLI4 (Neural-specific DNA-binding|
           protein xGLI4) (xGLI-4)
          Length = 1361

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 43  SRFHSYNQYSVIKCQFLLKKHNGQKLHY-CSHGSL 144
           SRFHS N  + +    L ++ NG   HY CS G L
Sbjct: 825 SRFHSMNSMNTLHPPSLSERRNGGLQHYTCSDGGL 859

>FP1_MYTCO (Q25434) Adhesive plaque matrix protein precursor (Foot protein 1)|
           (MCFP1)
          Length = 872

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 428 KLHPRLYRNIGLYIPVGRQFNKTYYPTPNPTRGFPGCGRRPAQLPPS 288
           K +P+ Y++ G Y P   Q  KTY P+  P + +P   +     PP+
Sbjct: 666 KSYPQAYKSKGSY-PPSYQPKKTYPPSYKPKKTYPPTYKPKISYPPT 711


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,205,726
Number of Sequences: 219361
Number of extensions: 1828235
Number of successful extensions: 4763
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4756
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)