ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart10g08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475179.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1170 Score = 172 bits (87), Expect = 7e-40 Identities = 204/243 (83%) Strand = Plus / Minus Query: 254 ctgaaaatcggcgccgatcggcaagtgatcactaggatggtggaagttgggcaggcctcc 313 |||||||||||| ||||| ||||| ||||| ||||||||||| |||||||| || ||||| Sbjct: 1149 ctgaaaatcggcaccgattggcaaatgatcgctaggatggtgaaagttgggtagccctcc 1090 Query: 314 ttccacatccggggaaccccctcgtgggattcggagtagggtagtaggttttattgaatt 373 || || || | ||| |||||||||| || || ||||| | |||||||||| |||| | Sbjct: 1089 ttggacttcggcagaatcccctcgtggtatacgaagtagactggtaggttttactgaact 1030 Query: 374 gtcgcccgacaggaatatatagtccaatgttccggtaaagcctggggtgcagtttgtgaa 433 | || |||||| |||||| ||||||| |||||| ||||| || || |||||||| ||||| Sbjct: 1029 gccgtccgacaagaatatgtagtccagtgttcctgtaaaaccaggagtgcagttggtgaa 970 Query: 434 ctccggctcccctccgttcgcagcatacaggctgcgcaatttgataggggcttcatccgt 493 ||| ||||||||||| ||||||||||| |||||||| |||||||| || ||||| ||||| Sbjct: 969 ctctggctcccctccattcgcagcataaaggctgcgtaatttgatcggagcttcgtccgt 910 Query: 494 aga 496 ||| Sbjct: 909 aga 907
>gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0073E05, complete sequence Length = 178013 Score = 172 bits (87), Expect = 7e-40 Identities = 204/243 (83%) Strand = Plus / Plus Query: 254 ctgaaaatcggcgccgatcggcaagtgatcactaggatggtggaagttgggcaggcctcc 313 |||||||||||| ||||| ||||| ||||| ||||||||||| |||||||| || ||||| Sbjct: 175082 ctgaaaatcggcaccgattggcaaatgatcgctaggatggtgaaagttgggtagccctcc 175141 Query: 314 ttccacatccggggaaccccctcgtgggattcggagtagggtagtaggttttattgaatt 373 || || || | ||| |||||||||| || || ||||| | |||||||||| |||| | Sbjct: 175142 ttggacttcggcagaatcccctcgtggtatacgaagtagactggtaggttttactgaact 175201 Query: 374 gtcgcccgacaggaatatatagtccaatgttccggtaaagcctggggtgcagtttgtgaa 433 | || |||||| |||||| ||||||| |||||| ||||| || || |||||||| ||||| Sbjct: 175202 gccgtccgacaagaatatgtagtccagtgttcctgtaaaaccaggagtgcagttggtgaa 175261 Query: 434 ctccggctcccctccgttcgcagcatacaggctgcgcaatttgataggggcttcatccgt 493 ||| ||||||||||| ||||||||||| |||||||| |||||||| || ||||| ||||| Sbjct: 175262 ctctggctcccctccattcgcagcataaaggctgcgtaatttgatcggagcttcgtccgt 175321 Query: 494 aga 496 ||| Sbjct: 175322 aga 175324
>gb|AC105773.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1562_H01, complete sequence Length = 88352 Score = 172 bits (87), Expect = 7e-40 Identities = 204/243 (83%) Strand = Plus / Plus Query: 254 ctgaaaatcggcgccgatcggcaagtgatcactaggatggtggaagttgggcaggcctcc 313 |||||||||||| ||||| ||||| ||||| ||||||||||| |||||||| || ||||| Sbjct: 7370 ctgaaaatcggcaccgattggcaaatgatcgctaggatggtgaaagttgggtagccctcc 7429 Query: 314 ttccacatccggggaaccccctcgtgggattcggagtagggtagtaggttttattgaatt 373 || || || | ||| |||||||||| || || ||||| | |||||||||| |||| | Sbjct: 7430 ttggacttcggcagaatcccctcgtggtatacgaagtagactggtaggttttactgaact 7489 Query: 374 gtcgcccgacaggaatatatagtccaatgttccggtaaagcctggggtgcagtttgtgaa 433 | || |||||| |||||| ||||||| |||||| ||||| || || |||||||| ||||| Sbjct: 7490 gccgtccgacaagaatatgtagtccagtgttcctgtaaaaccaggagtgcagttggtgaa 7549 Query: 434 ctccggctcccctccgttcgcagcatacaggctgcgcaatttgataggggcttcatccgt 493 ||| ||||||||||| ||||||||||| |||||||| |||||||| || ||||| ||||| Sbjct: 7550 ctctggctcccctccattcgcagcataaaggctgcgtaatttgatcggagcttcgtccgt 7609 Query: 494 aga 496 ||| Sbjct: 7610 aga 7612
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 172 bits (87), Expect = 7e-40 Identities = 204/243 (83%) Strand = Plus / Plus Query: 254 ctgaaaatcggcgccgatcggcaagtgatcactaggatggtggaagttgggcaggcctcc 313 |||||||||||| ||||| ||||| ||||| ||||||||||| |||||||| || ||||| Sbjct: 18701967 ctgaaaatcggcaccgattggcaaatgatcgctaggatggtgaaagttgggtagccctcc 18702026 Query: 314 ttccacatccggggaaccccctcgtgggattcggagtagggtagtaggttttattgaatt 373 || || || | ||| |||||||||| || || ||||| | |||||||||| |||| | Sbjct: 18702027 ttggacttcggcagaatcccctcgtggtatacgaagtagactggtaggttttactgaact 18702086 Query: 374 gtcgcccgacaggaatatatagtccaatgttccggtaaagcctggggtgcagtttgtgaa 433 | || |||||| |||||| ||||||| |||||| ||||| || || |||||||| ||||| Sbjct: 18702087 gccgtccgacaagaatatgtagtccagtgttcctgtaaaaccaggagtgcagttggtgaa 18702146 Query: 434 ctccggctcccctccgttcgcagcatacaggctgcgcaatttgataggggcttcatccgt 493 ||| ||||||||||| ||||||||||| |||||||| |||||||| || ||||| ||||| Sbjct: 18702147 ctctggctcccctccattcgcagcataaaggctgcgtaatttgatcggagcttcgtccgt 18702206 Query: 494 aga 496 ||| Sbjct: 18702207 aga 18702209
>dbj|AK104776.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-B12, full insert sequence Length = 1430 Score = 172 bits (87), Expect = 7e-40 Identities = 204/243 (83%) Strand = Plus / Minus Query: 254 ctgaaaatcggcgccgatcggcaagtgatcactaggatggtggaagttgggcaggcctcc 313 |||||||||||| ||||| ||||| ||||| ||||||||||| |||||||| || ||||| Sbjct: 1298 ctgaaaatcggcaccgattggcaaatgatcgctaggatggtgaaagttgggtagccctcc 1239 Query: 314 ttccacatccggggaaccccctcgtgggattcggagtagggtagtaggttttattgaatt 373 || || || | ||| |||||||||| || || ||||| | |||||||||| |||| | Sbjct: 1238 ttggacttcggcagaatcccctcgtggtatacgaagtagactggtaggttttactgaact 1179 Query: 374 gtcgcccgacaggaatatatagtccaatgttccggtaaagcctggggtgcagtttgtgaa 433 | || |||||| |||||| ||||||| |||||| ||||| || || |||||||| ||||| Sbjct: 1178 gccgtccgacaagaatatgtagtccagtgttcctgtaaaaccaggagtgcagttggtgaa 1119 Query: 434 ctccggctcccctccgttcgcagcatacaggctgcgcaatttgataggggcttcatccgt 493 ||| ||||||||||| ||||||||||| |||||||| |||||||| || ||||| ||||| Sbjct: 1118 ctctggctcccctccattcgcagcataaaggctgcgtaatttgatcggagcttcgtccgt 1059 Query: 494 aga 496 ||| Sbjct: 1058 aga 1056
>dbj|AK098939.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043C01, full insert sequence Length = 1540 Score = 172 bits (87), Expect = 7e-40 Identities = 204/243 (83%) Strand = Plus / Minus Query: 254 ctgaaaatcggcgccgatcggcaagtgatcactaggatggtggaagttgggcaggcctcc 313 |||||||||||| ||||| ||||| ||||| ||||||||||| |||||||| || ||||| Sbjct: 1270 ctgaaaatcggcaccgattggcaaatgatcgctaggatggtgaaagttgggtagccctcc 1211 Query: 314 ttccacatccggggaaccccctcgtgggattcggagtagggtagtaggttttattgaatt 373 || || || | ||| |||||||||| || || ||||| | |||||||||| |||| | Sbjct: 1210 ttggacttcggcagaatcccctcgtggtatacgaagtagactggtaggttttactgaact 1151 Query: 374 gtcgcccgacaggaatatatagtccaatgttccggtaaagcctggggtgcagtttgtgaa 433 | || |||||| |||||| ||||||| |||||| ||||| || || |||||||| ||||| Sbjct: 1150 gccgtccgacaagaatatgtagtccagtgttcctgtaaaaccaggagtgcagttggtgaa 1091 Query: 434 ctccggctcccctccgttcgcagcatacaggctgcgcaatttgataggggcttcatccgt 493 ||| ||||||||||| ||||||||||| |||||||| |||||||| || ||||| ||||| Sbjct: 1090 ctctggctcccctccattcgcagcataaaggctgcgtaatttgatcggagcttcgtccgt 1031 Query: 494 aga 496 ||| Sbjct: 1030 aga 1028
>dbj|AK060960.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-H11, full insert sequence Length = 1430 Score = 172 bits (87), Expect = 7e-40 Identities = 204/243 (83%) Strand = Plus / Minus Query: 254 ctgaaaatcggcgccgatcggcaagtgatcactaggatggtggaagttgggcaggcctcc 313 |||||||||||| ||||| ||||| ||||| ||||||||||| |||||||| || ||||| Sbjct: 1298 ctgaaaatcggcaccgattggcaaatgatcgctaggatggtgaaagttgggtagccctcc 1239 Query: 314 ttccacatccggggaaccccctcgtgggattcggagtagggtagtaggttttattgaatt 373 || || || | ||| |||||||||| || || ||||| | |||||||||| |||| | Sbjct: 1238 ttggacttcggcagaatcccctcgtggtatacgaagtagactggtaggttttactgaact 1179 Query: 374 gtcgcccgacaggaatatatagtccaatgttccggtaaagcctggggtgcagtttgtgaa 433 | || |||||| |||||| ||||||| |||||| ||||| || || |||||||| ||||| Sbjct: 1178 gccgtccgacaagaatatgtagtccagtgttcctgtaaaaccaggagtgcagttggtgaa 1119 Query: 434 ctccggctcccctccgttcgcagcatacaggctgcgcaatttgataggggcttcatccgt 493 ||| ||||||||||| ||||||||||| |||||||| |||||||| || ||||| ||||| Sbjct: 1118 ctctggctcccctccattcgcagcataaaggctgcgtaatttgatcggagcttcgtccgt 1059 Query: 494 aga 496 ||| Sbjct: 1058 aga 1056
>gb|AY112518.1| Zea mays CL340_1 mRNA sequence Length = 1575 Score = 131 bits (66), Expect = 2e-27 Identities = 180/218 (82%) Strand = Plus / Minus Query: 279 tgatcactaggatggtggaagttgggcaggcctccttccacatccggggaaccccctcgt 338 ||||| |||||||| | |||||||||| |||||||| ||||||| ||| ||||||| Sbjct: 1098 tgatcgctaggatgtcgaaagttgggcaagcctcctttcacatcctcagaatcccctcgc 1039 Query: 339 gggattcggagtagggtagtaggttttattgaattgtcgcccgacaggaatatatagtcc 398 || | || |||||| ||||||||||||| ||| | | |||||| |||||| |||||| Sbjct: 1038 ggcaaacgaagtaggctagtaggttttatcgaactaccatccgacaagaatatgtagtcc 979 Query: 399 aatgttccggtaaagcctggggtgcagtttgtgaactccggctcccctccgttcgcagca 458 | |||||||||||| || || ||| |||||||| |||| ||||||||||| ||||||||| Sbjct: 978 agtgttccggtaaaaccaggagtgtagtttgtgtactctggctcccctccattcgcagca 919 Query: 459 tacaggctgcgcaatttgataggggcttcatccgtaga 496 || |||||||| || ||||| || ||||| |||||||| Sbjct: 918 taaaggctgcgtaacttgattggagcttcgtccgtaga 881
>gb|AY022313.1| Oryza sativa microsatellite MRG4638 containing (AAG)X13, genomic sequence Length = 239 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 234 gctagctagctgctgagcagc 254 ||||||||||||||||||||| Sbjct: 225 gctagctagctgctgagcagc 205
>gb|AC117505.6| Homo sapiens 12 BAC RP11-162D11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 24701 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 285 ctaggatggtggaagttgggc 305 ||||||||||||||||||||| Sbjct: 13059 ctaggatggtggaagttgggc 13079
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 gctagctagctgctgagcagc 254 ||||||||||||||||||||| Sbjct: 20931953 gctagctagctgctgagcagc 20931973 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 ccagctagctagctgctgag 250 |||||||||||||||||||| Sbjct: 33298725 ccagctagctagctgctgag 33298744
>gb|AC093892.3| Homo sapiens BAC clone RP11-702L18 from 2, complete sequence Length = 111078 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 ttgggcaggcctccttccaca 320 ||||||||||||||||||||| Sbjct: 15651 ttgggcaggcctccttccaca 15631
>dbj|AP003902.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1110C07 Length = 173859 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 gctagctagctgctgagcagc 254 ||||||||||||||||||||| Sbjct: 150395 gctagctagctgctgagcagc 150415
>dbj|AK111255.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-180-E06, full insert sequence Length = 974 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 gctagctagctgctgagcagc 254 ||||||||||||||||||||| Sbjct: 55 gctagctagctgctgagcagc 75
>gb|AY693474.1| Cheilopogon spilonotopterus isolate N63b 16S ribosomal RNA gene, partial sequence; mitochondrial Length = 524 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 tagactgcaagcagaccatg 175 |||||||||||||||||||| Sbjct: 179 tagactgcaagcagaccatg 198
>gb|AY693473.1| Cheilopogon spilonotopterus isolate N63a 16S ribosomal RNA gene, partial sequence; mitochondrial Length = 524 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 tagactgcaagcagaccatg 175 |||||||||||||||||||| Sbjct: 179 tagactgcaagcagaccatg 198
>gb|AY693468.1| Cheilopogon dorsomacula isolate N60b 16S ribosomal RNA gene, partial sequence; mitochondrial Length = 523 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 tagactgcaagcagaccatg 175 |||||||||||||||||||| Sbjct: 179 tagactgcaagcagaccatg 198
>gb|AY693467.1| Cheilopogon dorsomacula isolate N60a 16S ribosomal RNA gene, partial sequence; mitochondrial Length = 523 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 tagactgcaagcagaccatg 175 |||||||||||||||||||| Sbjct: 179 tagactgcaagcagaccatg 198
>gb|AY693464.1| Prognichthys tringa isolate N58b 16S ribosomal RNA gene, partial sequence; mitochondrial Length = 523 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 tagactgcaagcagaccatg 175 |||||||||||||||||||| Sbjct: 179 tagactgcaagcagaccatg 198
>gb|AY693463.1| Prognichthys tringa isolate N58a 16S ribosomal RNA gene, partial sequence; mitochondrial Length = 523 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 tagactgcaagcagaccatg 175 |||||||||||||||||||| Sbjct: 179 tagactgcaagcagaccatg 198
>gb|AY693462.1| Hirundichthys marginatus isolate N57b 16S ribosomal RNA gene, partial sequence; mitochondrial Length = 523 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 tagactgcaagcagaccatg 175 |||||||||||||||||||| Sbjct: 179 tagactgcaagcagaccatg 198
>gb|AY693461.1| Hirundichthys marginatus isolate N57a 16S ribosomal RNA gene, partial sequence; mitochondrial Length = 523 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 tagactgcaagcagaccatg 175 |||||||||||||||||||| Sbjct: 179 tagactgcaagcagaccatg 198
>ref|XM_630716.1| Dictyostelium discoideum hypothetical protein (DDB0219551), partial mRNA Length = 5661 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tatcaaatgtcaattccttt 94 |||||||||||||||||||| Sbjct: 2899 tatcaaatgtcaattccttt 2880
>gb|AY304548.1| Homo sapiens CHEK1 gene, exons 1, 2 and partial cds Length = 10200 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 tagctgctgagcagctgaaa 259 |||||||||||||||||||| Sbjct: 683 tagctgctgagcagctgaaa 664
>gb|BT018486.1| Zea mays clone EL01N0424E08.d mRNA sequence Length = 1830 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 ctgcaagcagaccatggcca 179 |||||||||||||||||||| Sbjct: 134 ctgcaagcagaccatggcca 115
>gb|AC130840.3| Mus musculus BAC clone RP24-443G4 from chromosome 3, complete sequence Length = 175133 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 cagctagctagctgctgagc 251 |||||||||||||||||||| Sbjct: 9993 cagctagctagctgctgagc 10012
>gb|AC124607.4| Mus musculus BAC clone RP23-84H10 from chromosome 12, complete sequence Length = 168842 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 tcaaatgtcaattccttttg 96 |||||||||||||||||||| Sbjct: 135926 tcaaatgtcaattccttttg 135945
>gb|AC146608.2| Mus musculus BAC clone RP23-159D24 from chromosome 12, complete sequence Length = 173569 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 tcaaatgtcaattccttttg 96 |||||||||||||||||||| Sbjct: 93804 tcaaatgtcaattccttttg 93785
>ref|XM_809159.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506635.30) partial mRNA Length = 3663 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 tttgaagaaacacaacggcc 112 |||||||||||||||||||| Sbjct: 1576 tttgaagaaacacaacggcc 1595
>emb|CR855994.1| Wallaby DNA sequence from clone MEKBa-69G12, complete sequence Length = 174698 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 ctgagcagctgaaaatcggc 265 |||||||||||||||||||| Sbjct: 118931 ctgagcagctgaaaatcggc 118950
>gb|AC068620.5| Homo sapiens BAC clone RP11-646I6 from 4, complete sequence Length = 147534 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 2 ttcatttggccaaagccaaaagtcacat 29 |||| ||||||| ||||||||||||||| Sbjct: 64188 ttcacttggccagagccaaaagtcacat 64215
>gb|AC159480.5| Mus musculus 6 BAC RP24-470K4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 168310 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 ggtaaagcctggggtgcagt 426 |||||||||||||||||||| Sbjct: 95879 ggtaaagcctggggtgcagt 95860
>dbj|AB182653.1| Cypselurus hiraii mitochondrial DNA, complete genome Length = 16528 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 tagactgcaagcagaccatg 175 |||||||||||||||||||| Sbjct: 2250 tagactgcaagcagaccatg 2269
>gb|AC154904.4| Mus musculus BAC clone RP23-416C3 from chromosome 12, complete sequence Length = 194547 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 tcaaatgtcaattccttttg 96 |||||||||||||||||||| Sbjct: 42619 tcaaatgtcaattccttttg 42638
>gb|AF243947.1|AF243947 Cypselurus melanurus isolate N10b 16S large subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product Length = 520 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 tagactgcaagcagaccatg 175 |||||||||||||||||||| Sbjct: 179 tagactgcaagcagaccatg 198
>gb|AF243946.1|AF243946 Cypselurus melanurus isolate N10a 16S large subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product Length = 520 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 tagactgcaagcagaccatg 175 |||||||||||||||||||| Sbjct: 179 tagactgcaagcagaccatg 198
>gb|AC087882.17| Homo sapiens 12 BAC RP11-721B7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 97434 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 tttggccaaagccaaaagtcacat 29 ||||||||||| |||||||||||| Sbjct: 50147 tttggccaaagtcaaaagtcacat 50124
>dbj|AP003406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1070A12 Length = 148449 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 ccagctagctagctgctgag 250 |||||||||||||||||||| Sbjct: 91972 ccagctagctagctgctgag 91991
>dbj|AP001132.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-712D22, complete sequences Length = 170371 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 tagctgctgagcagctgaaa 259 |||||||||||||||||||| Sbjct: 11399 tagctgctgagcagctgaaa 11380
>gb|AC170911.3| Mus musculus BAC clone RP23-199D18 from chromosome 3, complete sequence Length = 196971 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 cagctagctagctgctgagc 251 |||||||||||||||||||| Sbjct: 183900 cagctagctagctgctgagc 183919
>emb|AL844149.4| Mouse DNA sequence from clone RP23-194D5 on chromosome 4, complete sequence Length = 199774 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 gaaggccatttgctgccaca 207 |||||||||||||||||||| Sbjct: 3772 gaaggccatttgctgccaca 3753 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,936,415 Number of Sequences: 3902068 Number of extensions: 3936415 Number of successful extensions: 74622 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74457 Number of HSP's gapped (non-prelim): 157 length of query: 496 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 474 effective length of database: 17,147,199,772 effective search space: 8127772691928 effective search space used: 8127772691928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
