ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart10g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DFRA_DIACA (P51104) Dihydroflavonol-4-reductase (EC 1.1.1.219) (... 42 6e-04
2MY18B_HUMAN (Q8IUG5) Myosin-18B (Myosin XVIIIb) 37 0.023
3CLIC6_RABIT (Q9N2G5) Chloride intracellular channel 6 (Parchorin) 35 0.067

>DFRA_DIACA (P51104) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR)|
           (Dihydrokaempferol 4-reductase)
          Length = 360

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
 Frame = -2

Query: 450 FPEYPVPTKCKDEVNPPVKGYKFTNQRLKDLGMEFVPVLQSIY-ETVKSLQEKGMLPV 280
           +PEY VPTK KD     +   +F++++L DLG EF   L+ +Y   V+S + KG+LP+
Sbjct: 287 YPEYNVPTKFKD-YKEDMGQVQFSSKKLTDLGFEFKYGLKDMYTAAVESCRAKGLLPL 343



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>MY18B_HUMAN (Q8IUG5) Myosin-18B (Myosin XVIIIb)|
          Length = 2567

 Score = 37.0 bits (84), Expect = 0.023
 Identities = 19/35 (54%), Positives = 24/35 (68%)
 Frame = -1

Query: 409 EPTGERVQVH*PEAQGPGDGVRAGAAEYIRDGEEP 305
           EP G+  Q   P+AQGPG+GVR G AE  ++G EP
Sbjct: 257 EPQGKDRQGTRPQAQGPGEGVRPGKAE--KEGAEP 289



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>CLIC6_RABIT (Q9N2G5) Chloride intracellular channel 6 (Parchorin)|
          Length = 637

 Score = 35.4 bits (80), Expect = 0.067
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -1

Query: 418 GRGEPTGERVQVH*PEAQG--PGDGVRAGAAEYIRDGEEPPGERDAAGATTK*RRPRQ 251
           G  +P  E V+V   E +G  PG+ V   AAE      EP G  DAAG      RP++
Sbjct: 264 GSPQPRSEAVEVAAAENEGHSPGESVEDAAAEEAAGTREPEGSEDAAGEDGDQGRPQE 321


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,582,659
Number of Sequences: 219361
Number of extensions: 1467966
Number of successful extensions: 4235
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4227
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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