>SYL_PORGI (Q7MW49) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 925

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -2

Query: 221 EYLGLTRANYALRDAVFSRPR 159
           ++LG  + NY LRDA+FSR R
Sbjct: 465 KHLGCVKVNYRLRDAIFSRQR 485

>SYI_ENTFA (Q836V1) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 926

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = +2

Query: 11  WSFIYSMEKLLQLATQCNKPSRHALKQQESIFKTWMHLHLHLQEKN*FRDEVLKTRRHAA 190
           WSF+   E+ +QLA     P       +E +  TW            FRD VLK    A 
Sbjct: 767 WSFLQEEEEYVQLA---EFPGYETFTNEEELMDTWAAFMD-------FRDNVLKALEEAR 816

Query: 191 HS 196
           HS
Sbjct: 817 HS 818

>EURL_MOUSE (Q9D7G4) Protein EURL homolog|
          Length = 290

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 2   KANWSFIYSMEKLLQLATQCNKPSRHAL 85
           K NW   Y+  K L L ++C+K S+H L
Sbjct: 93  KINWIVQYAQNKNLDLESECSKTSQHPL 120

>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2424

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 17/84 (20%)
 Frame = -1

Query: 402  RPRRAGDAGGRQPRQAV------------HGVSVRLRQAGKPRNVDHQRLHMA-----SP 274
            RPRR    GGR  R+A              G SV L +A +P     QRL        +P
Sbjct: 2292 RPRRRRGGGGRALRRAPGPREPLAQDSPGRGPSVCLARAARPAGP--QRLLPGPRTGQAP 2349

Query: 273  RGRARVRPAACLQASHRGVPWSYP 202
            R R   +PA  +Q   RG+  S P
Sbjct: 2350 RARLPQKPARSVQRERRGLVLSPP 2373

>SYL_BACFR (Q64MG4) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 943

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -2

Query: 347 GFLCVSAKPGNPGTWIISAFIWPRLAAALESDQQRVFKPLTAEYLGLTRANYALRDAVFS 168
           G +  S +PG P   ++   +  + A A   +       + A  LG  + N+ LRDA+FS
Sbjct: 431 GIMMNSPRPGAPEGGLVLNGLTVKEAIAKTKEY------IKATGLGRVKVNFRLRDAIFS 484

Query: 167 RPR 159
           R R
Sbjct: 485 RQR 487

>SYL_BACTN (Q8A329) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 944

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 215 LGLTRANYALRDAVFSRPR 159
           LG  + NY LRDA+FSR R
Sbjct: 470 LGRVKVNYRLRDAIFSRQR 488

>MGR5_RAT (P31424) Metabotropic glutamate receptor 5 precursor (mGluR5)|
          Length = 1203

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 371  ANLGRLCTGFLCVSAKPGNPGTWIISAFIWPR 276
            AN+  L +  L  +A PG PGT I S+++ P+
Sbjct: 1066 ANISELNSMMLSTAATPGPPGTPICSSYLIPK 1097

>ARPA_ECOLI (P23325) Ankyrin-repeat protein A (Ankyrin-like regulatory protein)|
          Length = 728

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = -2

Query: 344 FLCVSAKPGNPGTWIISAFIWPRLAAALESDQQRVFKPLTAE 219
           FL +S K  N  T I++A   P+LAA    D ++V+K L+A+
Sbjct: 435 FLAISRKDKNVVTSILNAL--PKLAATHHLDNEQVYKFLSAK 474

>VAX2_MOUSE (Q9WTP9) Ventral anterior homeobox 2 (Ventral retina homeodomain|
           protein)
          Length = 292

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +1

Query: 292 ALMIHVPGFPGLAETHR-----NPVHSLPRLASTGIASAAWP 402
           +L+   PG PGL  +HR     +P +S PRL     ASA+ P
Sbjct: 199 SLLALTPGLPGLPASHRGTSLVDPRNSSPRLNPMPSASASSP 240

>BPA1_HUMAN (Q03001) Bullous pemphigoid antigen 1 isoforms 1/2/3/4/5/8 (230 kDa|
           bullous pemphigoid antigen) (BPA) (Hemidesmosomal plaque
           protein) (Dystonia musculorum protein) (Dystonin)
           (Fragment)
          Length = 3214

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 313 GFPGLAETHRNPVHSLPRLASTG 381
           GFP LAET ++P+  LP +AS G
Sbjct: 11  GFPRLAETLQHPMCPLPLVASAG 33

>DAX1_PIG (P79386) Nuclear receptor 0B1 (Nuclear receptor DAX-1)|
          Length = 471

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 223 AVRGLKTRCWSDSSAAARRGHMKALMIHVPGFPGL 327
           A++G   +CWS   +     ++K  ++  P  PGL
Sbjct: 361 AIKGFLAKCWSLDISTKEYAYLKGTVLFNPDLPGL 395

>ATRN_MOUSE (Q9WU60) Attractin precursor (Mahogany protein)|
          Length = 1428

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +2

Query: 245 AAGLTLARPRGEAI*RR**STFLGFPAWRR-RTETPCTACRGWRP 376
           AA  T AR RG        +T    PA R+ R   PCTA   WRP
Sbjct: 6   AAAATEARLRGS-------TTTTAAPAGRKGRQHRPCTATGAWRP 43

>MURG_DECAR (Q47AA4) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 352

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = -2

Query: 395 AALAMPVDANLGRLCTGFLCVSAKPGNPGTWIISAFIWPRLAAALESDQQRVFKPLTAEY 216
           AA+A P +    R  TG L +    G+ G  +++  +   +A   ESDQ ++      ++
Sbjct: 164 AAIAAPAERFAER--TGALRLLVIGGSLGAQVLNEMVPQAMALLGESDQPQIVHQAGEKH 221

Query: 215 LGLTRANYA 189
           +   +ANYA
Sbjct: 222 IEALKANYA 230

>MAFB_HUMAN (Q9Y5Q3) Transcription factor MafB (V-maf musculoaponeurotic|
           fibrosarcoma oncogene homolog B)
          Length = 323

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/49 (32%), Positives = 19/49 (38%)
 Frame = -1

Query: 366 PRQAVHGVSVRLRQAGKPRNVDHQRLHMASPRGRARVRPAACLQASHRG 220
           P  A  G  V   + G   +  H   H ASP   +   PA  L  SH G
Sbjct: 141 PHHAYPGAGVAHDELGPHAHPHHHHHHQASPPPSSAASPAQQLPTSHPG 189

>SYL_CLOTE (Q898V2) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 812

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 263 LESDQQR--VFKPLTAEYLGLTRANYALRDAVFSRPR 159
           LES + R  V + L  E LG+ + NY LRD + SR R
Sbjct: 383 LESSKGRSAVVEKLEKENLGVKKINYRLRDWLVSRQR 419

>IKBE_HUMAN (O00221) NF-kappa-B inhibitor epsilon (NF-kappa-BIE)|
           (I-kappa-B-epsilon) (IkappaBepsilon) (IKB-epsilon)
           (IKBE)
          Length = 361

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 74  RHALKQQESIFKTWMHLHLHLQEKN*FRDEVLKTRRHAAHSLHG 205
           +  L  Q ++++T +HL +HL +    R  VLK    A    HG
Sbjct: 145 QEVLDIQNNLYQTALHLAVHLDQPGAVRALVLKGASRALQDRHG 188

>ATRN_RAT (Q99J86) Attractin precursor (Zitter protein)|
          Length = 1432

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +2

Query: 245 AAGLTLARPRGEAI*RR**STFLGFPA-WRRRTETPCTACRGWRP 376
           AA  T AR RG        +T    PA W+ R   PC A   WRP
Sbjct: 7   AAEATEARLRGY-------TTATAAPAGWKERQHRPCAATGAWRP 44

>HAS1_ASPFU (Q4WQM4) ATP-dependent RNA helicase has1 (EC 3.6.1.-)|
          Length = 622

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
 Frame = +3

Query: 285 YEGADDPRSWVSRLGGDAQKPRA--------QPAEVGVHRH 383
           ++  DDPR ++ R+G  A+   A        QP+EVG  +H
Sbjct: 462 FDPPDDPRDYIHRVGRTARGTNAKGRSLMFLQPSEVGFLKH 502

>GAG_MLVFF (P26806) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 537

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +3

Query: 273 EARPYEGADDPRSWVSRLGGDAQKPRA 353
           E  P EGA DP   VSRL G  + P A
Sbjct: 180 EVAPTEGAPDPSPMVSRLRGRKEPPVA 206

>UTP20_MOUSE (Q5XG71) Small subunit processome component 20 homolog|
            (Down-regulated in metastasis protein)
          Length = 2788

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 11   WSFIYSMEKLLQLATQCNKPSRHALKQQESIFKTWMHLHLHLQ 139
            + F+  M KL++   +C+    H  K  E++ K W H+H HL+
Sbjct: 2436 FGFLTLMRKLIK---ECS--IIHFTKPSETLSKIWSHVHSHLR 2473

>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)|
          Length = 262

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 21  FIQWRNFYNWQHNATNQVDMHLNNRNRSSKH 113
           F + RN   W H+  N+ D   N + RSS+H
Sbjct: 232 FYEDRNHDGWSHDYDNRRDSGRNGKWRSSRH 262


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,269,887
Number of Sequences: 219361
Number of extensions: 1065506
Number of successful extensions: 3305
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3303
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)