Clone Name | rbart10g01 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009213.1| Triticum aestivum clone wle1n.pk0057.g6:fis, full insert mRNA sequence Length = 1405 Score = 454 bits (229), Expect = e-124 Identities = 418/475 (88%), Gaps = 22/475 (4%) Strand = Plus / Minus Query: 36 taacaaacggtgtcgacagttcaacagaggaacggcaaacccgcacccgcccctgtatgt 95 |||||||||||||||||| ||||||||||||| ||||||||| | |||||||||| Sbjct: 1369 taacaaacggtgtcgacaattcaacagaggaatggcaaacccac------ccctgtatgt 1316 Query: 96 agaacacaggaaggggctgatcggcac-aatataatgcccagatagaatcttcggtttcc 154 || |||| ||||| |||| |||| ||||||||||||| | ||||| || ||||| Sbjct: 1315 ggagcaca---aggggtcgatccgcacgaatataatgcccaca--gaatcctcagtttcg 1261 Query: 155 cttcgtgatctcgggtacgaatgctacaaacacataggcaccggtgtccgctgtttctgg 214 |||| ||||||||||||||||||||| || |||||||||||||||||| ||||||||||| Sbjct: 1260 cttc-tgatctcgggtacgaatgctataagcacataggcaccggtgtctgctgtttctgg 1202 Query: 215 cactacaggtttagttcagtctggcga--catcaaagccagtagtacattttattgtgga 272 |||||||||| ||||||||||||||| |||||||||||||| |||||||||| ||| Sbjct: 1201 tactacaggttcagttcagtctggcgagacatcaaagccagta---cattttattgcgga 1145 Query: 273 gcacgacgatgcctcgatgccccacggcataaccggattggggggcaacggaagcggtcg 332 ||||||||| ||||||||||||| | ||| |||||| || || ||||||| |||||| || Sbjct: 1144 gcacgacgacgcctcgatgccccgcagcacaaccgggtttggaggcaacgaaagcggccg 1085 Query: 333 aacaaaaattgcatgagttcaagtgtgaaccatt----ataggctgggcaggtcgccgcc 388 ||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| Sbjct: 1084 aacaaaaattgcatgagttcaagtgtgaaccgttcgatataggctgagcaggtcgccgcc 1025 Query: 389 tagctctcctgcgcaaacttgacacccttctcgatggaagacagcagctcgcccttgagg 448 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1024 tagctctcctgcgcgaacttgacccccttctcgatggaagacagcagctcgcccttgagg 965 Query: 449 ctttccagcccctccttctccaaggccgatagctcgcccagcccaagcacttcct 503 || |||||||||||||||||||||||||| |||||||||||||| | |||||||| Sbjct: 964 ctctccagcccctccttctccaaggccgacagctcgcccagccccatcacttcct 910
>gb|BT016719.1| Zea mays clone Contig552 mRNA sequence Length = 1581 Score = 79.8 bits (40), Expect = 8e-12 Identities = 61/68 (89%) Strand = Plus / Minus Query: 401 gcaaacttgacacccttctcgatggaagacagcagctcgcccttgaggctttccagcccc 460 |||||||||| |||||| |||||||||||| ||||||||||||||| ||||||||||| Sbjct: 1179 gcaaacttgatacccttgtcgatggaagacttgagctcgcccttgaggttttccagcccc 1120 Query: 461 tccttctc 468 | |||||| Sbjct: 1119 ttcttctc 1112
>gb|AY103861.1| Zea mays PCO062153 mRNA sequence Length = 1633 Score = 79.8 bits (40), Expect = 8e-12 Identities = 61/68 (89%) Strand = Plus / Minus Query: 401 gcaaacttgacacccttctcgatggaagacagcagctcgcccttgaggctttccagcccc 460 |||||||||| |||||| |||||||||||| ||||||||||||||| ||||||||||| Sbjct: 1178 gcaaacttgatacccttgtcgatggaagacttgagctcgcccttgaggttttccagcccc 1119 Query: 461 tccttctc 468 | |||||| Sbjct: 1118 ttcttctc 1111
>ref|XM_475913.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1023 Score = 54.0 bits (27), Expect = 5e-04 Identities = 84/103 (81%) Strand = Plus / Minus Query: 401 gcaaacttgacacccttctcgatggaagacagcagctcgcccttgaggctttccagcccc 460 |||||||||| |||||||| || |||||| ||||| ||||| ||| | ||||| ||| Sbjct: 1010 gcaaacttgatgcccttctcaatcgaagacttgagctcacccttcaggttctccagaccc 951 Query: 461 tccttctccaaggccgatagctcgcccagcccaagcacttcct 503 |||||||| || | || |||| |||||||||||| ||||||| Sbjct: 950 tccttctcaaactcggaaagctggcccagcccaagtacttcct 908
>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10, complete sequence Length = 187034 Score = 54.0 bits (27), Expect = 5e-04 Identities = 84/103 (81%) Strand = Plus / Plus Query: 401 gcaaacttgacacccttctcgatggaagacagcagctcgcccttgaggctttccagcccc 460 |||||||||| |||||||| || |||||| ||||| ||||| ||| | ||||| ||| Sbjct: 181852 gcaaacttgatgcccttctcaatcgaagacttgagctcacccttcaggttctccagaccc 181911 Query: 461 tccttctccaaggccgatagctcgcccagcccaagcacttcct 503 |||||||| || | || |||| |||||||||||| ||||||| Sbjct: 181912 tccttctcaaactcggaaagctggcccagcccaagtacttcct 181954
>gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1268_B08, complete sequence Length = 119500 Score = 54.0 bits (27), Expect = 5e-04 Identities = 84/103 (81%) Strand = Plus / Plus Query: 401 gcaaacttgacacccttctcgatggaagacagcagctcgcccttgaggctttccagcccc 460 |||||||||| |||||||| || |||||| ||||| ||||| ||| | ||||| ||| Sbjct: 32534 gcaaacttgatgcccttctcaatcgaagacttgagctcacccttcaggttctccagaccc 32593 Query: 461 tccttctccaaggccgatagctcgcccagcccaagcacttcct 503 |||||||| || | || |||| |||||||||||| ||||||| Sbjct: 32594 tccttctcaaactcggaaagctggcccagcccaagtacttcct 32636
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 54.0 bits (27), Expect = 5e-04 Identities = 84/103 (81%) Strand = Plus / Plus Query: 401 gcaaacttgacacccttctcgatggaagacagcagctcgcccttgaggctttccagcccc 460 |||||||||| |||||||| || |||||| ||||| ||||| ||| | ||||| ||| Sbjct: 28397610 gcaaacttgatgcccttctcaatcgaagacttgagctcacccttcaggttctccagaccc 28397669 Query: 461 tccttctccaaggccgatagctcgcccagcccaagcacttcct 503 |||||||| || | || |||| |||||||||||| ||||||| Sbjct: 28397670 tccttctcaaactcggaaagctggcccagcccaagtacttcct 28397712
>dbj|AK073698.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057I02, full insert sequence Length = 1303 Score = 54.0 bits (27), Expect = 5e-04 Identities = 84/103 (81%) Strand = Plus / Minus Query: 401 gcaaacttgacacccttctcgatggaagacagcagctcgcccttgaggctttccagcccc 460 |||||||||| |||||||| || |||||| ||||| ||||| ||| | ||||| ||| Sbjct: 1067 gcaaacttgatgcccttctcaatcgaagacttgagctcacccttcaggttctccagaccc 1008 Query: 461 tccttctccaaggccgatagctcgcccagcccaagcacttcct 503 |||||||| || | || |||| |||||||||||| ||||||| Sbjct: 1007 tccttctcaaactcggaaagctggcccagcccaagtacttcct 965
>gb|BT017838.1| Zea mays clone EL01N0509G03.c mRNA sequence Length = 1337 Score = 46.1 bits (23), Expect = 0.11 Identities = 83/103 (80%) Strand = Plus / Minus Query: 401 gcaaacttgacacccttctcgatggaagacagcagctcgcccttgaggctttccagcccc 460 |||||||||| ||||||||| || |||||| ||||||| |||||| | |||| ||| Sbjct: 1039 gcaaacttgatacccttctcaatcgaagacttgagctcgctcttgagcttctccaaccct 980 Query: 461 tccttctccaaggccgatagctcgcccagcccaagcacttcct 503 || ||||| ||| |||| ||||| || | ||||||||||||| Sbjct: 979 tctttctcaaagtccgacagctcacctaatccaagcacttcct 937
>gb|BT016218.1| Zea mays clone Contig51 mRNA sequence Length = 1263 Score = 46.1 bits (23), Expect = 0.11 Identities = 83/103 (80%) Strand = Plus / Minus Query: 401 gcaaacttgacacccttctcgatggaagacagcagctcgcccttgaggctttccagcccc 460 |||||||||| ||||||||| || |||||| ||||||| |||||| | |||| ||| Sbjct: 973 gcaaacttgatacccttctcaatcgaagacttgagctcgctcttgagcttctccaaccct 914 Query: 461 tccttctccaaggccgatagctcgcccagcccaagcacttcct 503 || ||||| ||| |||| ||||| || | ||||||||||||| Sbjct: 913 tctttctcaaagtccgacagctcacctaatccaagcacttcct 871
>gb|DQ083216.1| Oryza sativa (indica cultivar-group) clone 8S2F40 mRNA sequence Length = 269 Score = 46.1 bits (23), Expect = 0.11 Identities = 77/95 (81%) Strand = Plus / Minus Query: 401 gcaaacttgacacccttctcgatggaagacagcagctcgcccttgaggctttccagcccc 460 |||||||||| |||||||| || |||||| ||||| ||||| ||| | ||||| ||| Sbjct: 96 gcaaacttgatgcccttctcaatcgaagacttgagctcacccttcaggttctccagaccc 37 Query: 461 tccttctccaaggccgatagctcgcccagcccaag 495 |||||||| || | || |||| |||||||||||| Sbjct: 36 tccttctcaaactcggaaagctggcccagcccaag 2
>gb|AY108006.1| Zea mays PCO144615 mRNA sequence Length = 701 Score = 46.1 bits (23), Expect = 0.11 Identities = 83/103 (80%) Strand = Plus / Minus Query: 401 gcaaacttgacacccttctcgatggaagacagcagctcgcccttgaggctttccagcccc 460 |||||||||| ||||||||| || |||||| ||||||| |||||| | |||| ||| Sbjct: 423 gcaaacttgatacccttctcaatcgaagacttgagctcgctcttgagcttctccaaccct 364 Query: 461 tccttctccaaggccgatagctcgcccagcccaagcacttcct 503 || ||||| ||| |||| ||||| || | ||||||||||||| Sbjct: 363 tctttctcaaagtccgacagctcacctaatccaagcacttcct 321
>gb|AC092643.2| Homo sapiens BAC clone RP11-393P9 from 4, complete sequence Length = 151902 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 449 ctttccagcccctccttctcca 470 |||||||||||||||||||||| Sbjct: 30162 ctttccagcccctccttctcca 30183
>gb|AC093803.3| Homo sapiens BAC clone RP11-319N12 from 4, complete sequence Length = 191903 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 aaaaattgcatgagttcaagt 356 ||||||||||||||||||||| Sbjct: 81534 aaaaattgcatgagttcaagt 81554
>gb|AC025821.7| Homo sapiens BAC clone RP11-472F4 from 4, complete sequence Length = 178378 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 aaaaattgcatgagttcaagt 356 ||||||||||||||||||||| Sbjct: 152821 aaaaattgcatgagttcaagt 152841
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 251 cagtagtacattttattgtgg 271 ||||||||||||||||||||| Sbjct: 2656359 cagtagtacattttattgtgg 2656339
>gb|AC079907.25| Homo sapiens 12q BAC RP11-554E23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 184840 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1 ccaaaaaagcacacaccaacaaata 25 ||||||||||||| ||||||||||| Sbjct: 95167 ccaaaaaagcacaaaccaacaaata 95143
>gb|AC023795.18| Homo sapiens 12 BAC RP11-242B24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161838 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 443 ttgaggctttccagcccctccttct 467 ||||||||||||||||||| ||||| Sbjct: 125985 ttgaggctttccagcccctgcttct 126009
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 251 cagtagtacattttattgtgg 271 ||||||||||||||||||||| Sbjct: 1631058 cagtagtacattttattgtgg 1631078
>ref|XM_953561.1| Neurospora crassa OR74A hypothetical protein (NCU09887.1) partial mRNA Length = 1017 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 cctccttctccaaggccgat 478 |||||||||||||||||||| Sbjct: 255 cctccttctccaaggccgat 274
>gb|AY046315.3| Bradyrhizobium japonicum inner membrane ABC transporter (ndvA) gene, partial cds; Pbp, phosphoribosyl-ATP pyrophosphohydrolase (his2), DedA (dedA), aspartate ammonium lyase (aspA), and fatty acid CoA-ligase (coaL) genes, complete cds; and unknown genes Length = 10628 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 cacataggcaccggtgtccg 204 |||||||||||||||||||| Sbjct: 6278 cacataggcaccggtgtccg 6259
>ref|XM_330808.1| Neurospora crassa OR74A hypothetical protein (NCU09887.1) partial mRNA Length = 1017 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 cctccttctccaaggccgat 478 |||||||||||||||||||| Sbjct: 255 cctccttctccaaggccgat 274
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 cagcagctcgcccttgaggc 449 |||||||||||||||||||| Sbjct: 1685978 cagcagctcgcccttgaggc 1685997
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 cagcagctcgcccttgaggc 449 |||||||||||||||||||| Sbjct: 1515698 cagcagctcgcccttgaggc 1515717
>ref|XM_383918.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03742.1) partial mRNA Length = 2415 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 cttgacacccttctcgatgg 425 |||||||||||||||||||| Sbjct: 372 cttgacacccttctcgatgg 353
>emb|AL121581.41|HS1022E24 Human DNA sequence from clone RP5-1022E24 on chromosome 20 Contains the 3' end of the OPRL1 gene for opiate receptor-like 1 protein, the GPR8 gene encoding a G protein-coupled receptor, the KIAA0835 gene encoding a protein similar to the myelin transcription factor 1 (MYT1), a novel gene, 7 CpG islands, ESTs, STSs and GSSs, complete sequence Length = 179888 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 456 gcccctccttctccaaggccgata 479 |||||||||||| ||||||||||| Sbjct: 152628 gcccctccttcttcaaggccgata 152651
>emb|BX663515.13| Zebrafish DNA sequence from clone DKEY-228G21 in linkage group 23, complete sequence Length = 224215 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ccagtagtacattttattgt 269 |||||||||||||||||||| Sbjct: 121923 ccagtagtacattttattgt 121904
>gb|AC026688.7| Homo sapiens chromosome 5 clone CTB-158E9, complete sequence Length = 134778 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 agaacacaggaaggggctga 115 |||||||||||||||||||| Sbjct: 55148 agaacacaggaaggggctga 55129
>gb|AC079776.5| Homo sapiens BAC clone RP11-315H12 from 2, complete sequence Length = 198961 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 241 acatcaaagccagtagtacatttt 264 ||||||||||||||| |||||||| Sbjct: 24909 acatcaaagccagtattacatttt 24932
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 cacataggcaccggtgtccg 204 |||||||||||||||||||| Sbjct: 1440699 cacataggcaccggtgtccg 1440680 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,814,994 Number of Sequences: 3902068 Number of extensions: 3814994 Number of successful extensions: 64997 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64824 Number of HSP's gapped (non-prelim): 170 length of query: 503 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 481 effective length of database: 17,147,199,772 effective search space: 8247803090332 effective search space used: 8247803090332 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)