ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart10f12 |
|---|---|
| Clone Library Name | barley_pub |
>PSA3_ORYSA (Q9LSU0) Proteasome subunit alpha type 3 (EC 3.4.25.1) (20S| proteasome alpha subunit G) (20S proteasome subunit alpha-7) Length = 249 Score = 130 bits (328), Expect = 1e-30 Identities = 62/67 (92%), Positives = 67/67 (100%) Frame = -2 Query: 484 AALGKGRQAAKTEIEKLKLSELTCREGIVEVAKIIYGVHDEAKDKSFELELSWVCEESNR 305 AALGKGRQAAKTEIEKLKLSELTCREGIVEVAKIIYGVHDEAKDK+FELELSW+C+ESNR Sbjct: 163 AALGKGRQAAKTEIEKLKLSELTCREGIVEVAKIIYGVHDEAKDKAFELELSWICDESNR 222 Query: 304 QHEKVPS 284 QH+KVP+ Sbjct: 223 QHQKVPA 229
>PSA3_SPIOL (O24362) Proteasome subunit alpha type 3 (EC 3.4.25.1) (20S| proteasome alpha subunit G) (20S proteasome subunit alpha-7) (Proteasome component C8) Length = 249 Score = 120 bits (300), Expect = 3e-27 Identities = 54/66 (81%), Positives = 64/66 (96%) Frame = -2 Query: 484 AALGKGRQAAKTEIEKLKLSELTCREGIVEVAKIIYGVHDEAKDKSFELELSWVCEESNR 305 AA+GKG+QAAKTEIEKLKLSE+TCREGI+EVAKIIY VHDEAKDK+FELE+SW+C+ES R Sbjct: 163 AAIGKGKQAAKTEIEKLKLSEMTCREGIIEVAKIIYKVHDEAKDKAFELEMSWICDESKR 222 Query: 304 QHEKVP 287 +H+KVP Sbjct: 223 EHQKVP 228
>PSA3_ARATH (O23715) Proteasome subunit alpha type 3 (EC 3.4.25.1) (Proteasome| subunit alpha type 7) (20S proteasome alpha subunit G-1) (Proteasome component 8) (DiDi 17A-2a) Length = 249 Score = 116 bits (291), Expect = 3e-26 Identities = 51/66 (77%), Positives = 63/66 (95%) Frame = -2 Query: 484 AALGKGRQAAKTEIEKLKLSELTCREGIVEVAKIIYGVHDEAKDKSFELELSWVCEESNR 305 AA+GKG+QAAKTEIEKL LSE+TC+EG++EVAKIIY +HDEAKDK+FELE+SW+CEES R Sbjct: 163 AAIGKGKQAAKTEIEKLNLSEMTCKEGVIEVAKIIYKLHDEAKDKAFELEMSWICEESKR 222 Query: 304 QHEKVP 287 +H+KVP Sbjct: 223 EHQKVP 228
>PSA3_ACACA (P90513) Proteasome subunit alpha type 3 (EC 3.4.25.1) (Fragment)| Length = 252 Score = 100 bits (249), Expect = 2e-21 Identities = 48/65 (73%), Positives = 55/65 (84%) Frame = -2 Query: 481 ALGKGRQAAKTEIEKLKLSELTCREGIVEVAKIIYGVHDEAKDKSFELELSWVCEESNRQ 302 A+GKG +AAKTEIEKLKLSE+T RE I E AKIIY VHD+AKDK+FELELSWVCEE+ Sbjct: 162 AIGKGARAAKTEIEKLKLSEMTAREAIKEAAKIIYSVHDDAKDKAFELELSWVCEETGNL 221 Query: 301 HEKVP 287 H+ VP Sbjct: 222 HKFVP 226
>PSA3_HUMAN (P25788) Proteasome subunit alpha type 3 (EC 3.4.25.1) (Proteasome| component C8) (Macropain subunit C8) (Multicatalytic endopeptidase complex subunit C8) Length = 254 Score = 94.7 bits (234), Expect = 1e-19 Identities = 46/65 (70%), Positives = 55/65 (84%) Frame = -2 Query: 481 ALGKGRQAAKTEIEKLKLSELTCREGIVEVAKIIYGVHDEAKDKSFELELSWVCEESNRQ 302 A+GK RQAAKTEIEKL++ E+TCR+ + EVAKIIY VHDE KDK+FELELSWV E +N + Sbjct: 164 AIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGR 223 Query: 301 HEKVP 287 HE VP Sbjct: 224 HEIVP 228
>PSA3_RAT (P18422) Proteasome subunit alpha type 3 (EC 3.4.25.1) (Proteasome| component C8) (Macropain subunit C8) (Multicatalytic endopeptidase complex subunit C8) (Proteasome subunit K) Length = 254 Score = 92.8 bits (229), Expect = 4e-19 Identities = 45/65 (69%), Positives = 54/65 (83%) Frame = -2 Query: 481 ALGKGRQAAKTEIEKLKLSELTCREGIVEVAKIIYGVHDEAKDKSFELELSWVCEESNRQ 302 A+GK RQAAKTEIEKL++ E+TCR+ + EVAKIIY VHDE KDK+FELELSWV E + + Sbjct: 164 AIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVGELTKGR 223 Query: 301 HEKVP 287 HE VP Sbjct: 224 HEIVP 228
>PSA3_MOUSE (O70435) Proteasome subunit alpha type 3 (EC 3.4.25.1) (Proteasome| component C8) (Macropain subunit C8) (Multicatalytic endopeptidase complex subunit C8) (Proteasome subunit K) Length = 254 Score = 92.8 bits (229), Expect = 4e-19 Identities = 45/65 (69%), Positives = 54/65 (83%) Frame = -2 Query: 481 ALGKGRQAAKTEIEKLKLSELTCREGIVEVAKIIYGVHDEAKDKSFELELSWVCEESNRQ 302 A+GK RQAAKTEIEKL++ E+TCR+ + EVAKIIY VHDE KDK+FELELSWV E + + Sbjct: 164 AIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVGELTKGR 223 Query: 301 HEKVP 287 HE VP Sbjct: 224 HEIVP 228
>PSA3_DICDI (Q27563) Proteasome subunit alpha type 3 (EC 3.4.25.1)| Length = 248 Score = 91.3 bits (225), Expect = 1e-18 Identities = 40/66 (60%), Positives = 53/66 (80%) Frame = -2 Query: 484 AALGKGRQAAKTEIEKLKLSELTCREGIVEVAKIIYGVHDEAKDKSFELELSWVCEESNR 305 A+LGKG+QAAK E+E+++ SE+TCRE I EV++IIY VHDE KDK FELEL W+ E++ Sbjct: 163 ASLGKGKQAAKNELEEIRFSEMTCREAIKEVSRIIYSVHDEVKDKDFELELGWISTETDN 222 Query: 304 QHEKVP 287 H+ VP Sbjct: 223 VHQIVP 228
>PSA3_CAEEL (Q09583) Proteasome subunit alpha type 3 (EC 3.4.25.1) (Proteasome| subunit alpha 7) Length = 249 Score = 72.4 bits (176), Expect = 6e-13 Identities = 35/66 (53%), Positives = 49/66 (74%) Frame = -2 Query: 481 ALGKGRQAAKTEIEKLKLSELTCREGIVEVAKIIYGVHDEAKDKSFELELSWVCEESNRQ 302 A+GK RQAAK EIEKLK+ EL + + E A+II V DE KDK+ ++E+ WV E++N + Sbjct: 163 AVGKHRQAAKAEIEKLKIEELDVNQLVKEAARIIMVVRDENKDKNVQIEMGWVGEQTNGK 222 Query: 301 HEKVPS 284 +E+VPS Sbjct: 223 YEEVPS 228
>PSA3_SCHPO (O59770) Probable proteasome subunit alpha type 3 (EC 3.4.25.1)| Length = 253 Score = 69.3 bits (168), Expect = 5e-12 Identities = 31/66 (46%), Positives = 43/66 (65%) Frame = -2 Query: 484 AALGKGRQAAKTEIEKLKLSELTCREGIVEVAKIIYGVHDEAKDKSFELELSWVCEESNR 305 AA GKGRQ A+ E+EKL S L ++ + E A+I+Y HDE +K E+E++WV E+N Sbjct: 162 AAAGKGRQVARNELEKLNFSSLKMKDAVKEAARILYATHDEENNKEHEIEMTWVGVETNG 221 Query: 304 QHEKVP 287 H VP Sbjct: 222 IHTPVP 227
>PSA3_YEAST (P21242) Proteasome component C1 (EC 3.4.25.1) (Macropain subunit| C1) (Proteinase YSCE subunit 1) (Multicatalytic endopeptidase complex subunit C1) Length = 287 Score = 60.8 bits (146), Expect = 2e-09 Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 4/69 (5%) Frame = -2 Query: 484 AALGKGRQAAKTEIEKL---KLSELTCREGIVEVAKIIYGVHDEAKDKSFELELSWV-CE 317 AA GKGRQ+AK E+EKL L+ RE + + AKIIY H++ K+K FELE+SW Sbjct: 162 AATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLS 221 Query: 316 ESNRQHEKV 290 E+N H+ V Sbjct: 222 ETNGLHKFV 230
>PSA3_DROME (Q9V5C6) Proteasome subunit alpha type 3 (EC 3.4.25.1) (20S| proteasome subunit alpha-7) Length = 253 Score = 50.4 bits (119), Expect = 2e-06 Identities = 29/66 (43%), Positives = 38/66 (57%) Frame = -2 Query: 481 ALGKGRQAAKTEIEKLKLSELTCREGIVEVAKIIYGVHDEAKDKSFELELSWVCEESNRQ 302 A GK +Q AKTE+EKLK+ ++ E + +IIY VHDE KDK F E+ V + Sbjct: 165 ASGKAKQLAKTEMEKLKM-DMRTDELVESAGEIIYKVHDELKDKDFRFEMGLVGRVTGGL 223 Query: 301 HEKVPS 284 H PS Sbjct: 224 HLINPS 229 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,965,025 Number of Sequences: 219361 Number of extensions: 812056 Number of successful extensions: 1973 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1934 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1971 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
