ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart10f12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK103541.1| Oryza sativa (japonica cultivar-group) cDNA clon... 208 1e-50
2dbj|AK061784.1| Oryza sativa (japonica cultivar-group) cDNA clon... 208 1e-50
3dbj|AB026562.1| Oryza sativa (japonica cultivar-group) OsPAG1 mR... 208 1e-50
4ref|NM_191042.1| Oryza sativa (japonica cultivar-group), predic... 200 3e-48
5ref|XM_475461.1| Oryza sativa (japonica cultivar-group), predic... 190 3e-45
6gb|BT017777.1| Zea mays clone EL01N0503B10.c mRNA sequence 176 4e-41
7gb|BT017004.1| Zea mays clone EK07D2310A08.c mRNA sequence 172 7e-40
8gb|AY109645.1| Zea mays CL4356_2 mRNA sequence 165 2e-37
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
10dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
11dbj|AP003247.4| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
12gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome... 68 3e-08
13gb|AY459341.1| Oryza sativa (japonica cultivar-group) clone CL03... 68 3e-08
14dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
15gb|BT013996.1| Lycopersicon esculentum clone 133043F, mRNA sequence 48 0.027
16gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome 44 0.42
17ref|NM_128260.3| Arabidopsis thaliana PAG1; endopeptidase/ pepti... 42 1.7
18gb|AC168148.15| Medicago truncatula clone mth2-80b11, complete s... 42 1.7
19gb|AC152407.19| Medicago truncatula clone mth2-77l23, complete s... 42 1.7
20emb|Y13693.1|ATY13693 Arabidopsis thaliana mRNA for proteasome s... 42 1.7
21gb|AY124806.1| Arabidopsis thaliana At2g27020/T20P8.7 mRNA, comp... 42 1.7
22gb|AF375455.1| Arabidopsis thaliana At2g27020/T20P8.7 mRNA, comp... 42 1.7
23emb|BX819273.1|CNS0A9VK Arabidopsis thaliana Full-length cDNA Co... 42 1.7
24gb|AY088609.1| Arabidopsis thaliana clone 8342 mRNA, complete se... 42 1.7
25gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence 42 1.7
26gb|AF043528.1|AF043528 Arabidopsis thaliana 20S proteasome subun... 42 1.7
27gb|AC168217.2| Mus musculus BAC clone RP24-498P8 from chromosome... 40 6.6
28gb|BC097109.1| Danio rerio zgc:114044, mRNA (cDNA clone MGC:1140... 40 6.6
29gb|AC161490.7| Mus musculus chromosome 7, clone RP23-307M23, com... 40 6.6
30ref|NM_001030187.1| Danio rerio zgc:114044 (zgc:114044), mRNA 40 6.6
31gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 6.6
32emb|AL353764.9| Human DNA sequence from clone RP11-440G5 on chro... 40 6.6
33emb|AJ586898.1| Platanus acerifolia partial mRNA for polygalactu... 40 6.6
34gb|AC092997.6| Homo sapiens 3 BAC RP11-711L14 (Roswell Park Canc... 40 6.6
35gb|AC105937.2| Homo sapiens chromosome 3 clone RP11-45J19, compl... 40 6.6
36gb|BC113948.1| Rattus norvegicus cDNA clone MGC:124733 IMAGE:793... 40 6.6
37emb|BX511180.7| Zebrafish DNA sequence from clone CH211-221H1 in... 40 6.6
38ref|XM_340818.2| PREDICTED: Rattus norvegicus myosin, heavy poly... 40 6.6
39gb|AC009948.3| Homo sapiens BAC clone RP11-65L3 from 2, complete... 40 6.6
40dbj|AP003406.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
41emb|Z69793.1|CER03A10 Caenorhabditis elegans Cosmid R03A10, comp... 40 6.6
42gb|AC137678.11| Mus musculus chromosome 9, clone RP24-484G16, co... 40 6.6
43gb|AF097313.1|AF097313 Xenopus laevis axin mRNA, complete cds 40 6.6
44emb|BX119994.7| Mouse DNA sequence from clone RP23-272G10 on chr... 40 6.6
45gb|AC154374.1| Mus musculus BAC clone RP23-81F24 from 9, complet... 40 6.6
46gb|M98497.1|CHKRHOPR Chicken rhodopsin gene, promoter region 40 6.6 
>dbj|AK103541.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132C12, full
            insert sequence
          Length = 1188

 Score =  208 bits (105), Expect = 1e-50
 Identities = 231/273 (84%)
 Strand = Plus / Minus

                                                                        
Query: 213  gtctcttcttagtcagcatccatctcttccaacgctgcctgcgctgctgccttggcctgc 272
            ||||| ||||| |||||||||||||| || | ||||||||| |||||  |||||||||||
Sbjct: 1012 gtctcctcttaatcagcatccatctcctcaagcgctgcctgagctgcaaccttggcctgc 953

                                                                        
Query: 273  tccagaagatcactcggaaccttctcgtgctgacggttagattcctcacatacccagctc 332
            |||| |||||||   ||||||||||  ||||| || || ||||| ||||||| |||||| 
Sbjct: 952  tccaaaagatcagcaggaaccttctgatgctggcgatttgattcatcacatatccagctt 893

                                                                        
Query: 333  agttccagctcaaaagatttgtctttcgcttcgtcgtgcacaccataaattatcttggca 392
            | ||||| |||||||| |||||| || ||||| || || || |||||||| ||||| |||
Sbjct: 892  aattccaactcaaaagctttgtccttagcttcatcatgtactccataaatgatctttgca 833

                                                                        
Query: 393  acctcaacgatgccttccctgcaggttagctcagaaagcttcaatttctcaatctccgtt 452
            ||||| || |||||||||| |||||| ||||| ||||||||||| ||||| || || |||
Sbjct: 832  acctccacaatgccttcccggcaggtaagctcggaaagcttcaacttctctatttcagtt 773

                                             
Query: 453  tttgcagcttgtctacctttacccagagcagca 485
            |||||||| ||||| ||||||||||||||||||
Sbjct: 772  tttgcagcctgtcttcctttacccagagcagca 740
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>dbj|AK061784.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-E06, full
           insert sequence
          Length = 1120

 Score =  208 bits (105), Expect = 1e-50
 Identities = 231/273 (84%)
 Strand = Plus / Minus

                                                                       
Query: 213 gtctcttcttagtcagcatccatctcttccaacgctgcctgcgctgctgccttggcctgc 272
           ||||| ||||| |||||||||||||| || | ||||||||| |||||  |||||||||||
Sbjct: 944 gtctcctcttaatcagcatccatctcctcaagcgctgcctgagctgcaaccttggcctgc 885

                                                                       
Query: 273 tccagaagatcactcggaaccttctcgtgctgacggttagattcctcacatacccagctc 332
           |||| |||||||   ||||||||||  ||||| || || ||||| ||||||| |||||| 
Sbjct: 884 tccaaaagatcagcaggaaccttctgatgctggcgatttgattcatcacatatccagctt 825

                                                                       
Query: 333 agttccagctcaaaagatttgtctttcgcttcgtcgtgcacaccataaattatcttggca 392
           | ||||| |||||||| |||||| || ||||| || || || |||||||| ||||| |||
Sbjct: 824 aattccaactcaaaagctttgtccttagcttcatcatgtactccataaatgatctttgca 765

                                                                       
Query: 393 acctcaacgatgccttccctgcaggttagctcagaaagcttcaatttctcaatctccgtt 452
           ||||| || |||||||||| |||||| ||||| ||||||||||| ||||| || || |||
Sbjct: 764 acctccacaatgccttcccggcaggtaagctcggaaagcttcaacttctctatttcagtt 705

                                            
Query: 453 tttgcagcttgtctacctttacccagagcagca 485
           |||||||| ||||| ||||||||||||||||||
Sbjct: 704 tttgcagcctgtcttcctttacccagagcagca 672
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>dbj|AB026562.1| Oryza sativa (japonica cultivar-group) OsPAG1 mRNA for alpha 7
           subunit of 20S proteasome, complete cds
          Length = 1091

 Score =  208 bits (105), Expect = 1e-50
 Identities = 231/273 (84%)
 Strand = Plus / Minus

                                                                       
Query: 213 gtctcttcttagtcagcatccatctcttccaacgctgcctgcgctgctgccttggcctgc 272
           ||||| ||||| |||||||||||||| || | ||||||||| |||||  |||||||||||
Sbjct: 908 gtctcctcttaatcagcatccatctcctcaagcgctgcctgagctgcaaccttggcctgc 849

                                                                       
Query: 273 tccagaagatcactcggaaccttctcgtgctgacggttagattcctcacatacccagctc 332
           |||| |||||||   ||||||||||  ||||| || || ||||| ||||||| |||||| 
Sbjct: 848 tccaaaagatcagcaggaaccttctgatgctggcgatttgattcatcacatatccagctt 789

                                                                       
Query: 333 agttccagctcaaaagatttgtctttcgcttcgtcgtgcacaccataaattatcttggca 392
           | ||||| |||||||| |||||| || ||||| || || || |||||||| ||||| |||
Sbjct: 788 aattccaactcaaaagctttgtccttagcttcatcatgtactccataaatgatctttgca 729

                                                                       
Query: 393 acctcaacgatgccttccctgcaggttagctcagaaagcttcaatttctcaatctccgtt 452
           ||||| || |||||||||| |||||| ||||| ||||||||||| ||||| || || |||
Sbjct: 728 acctccacaatgccttcccggcaggtaagctcggaaagcttcaacttctctatttcagtt 669

                                            
Query: 453 tttgcagcttgtctacctttacccagagcagca 485
           |||||||| ||||| ||||||||||||||||||
Sbjct: 668 tttgcagcctgtcttcctttacccagagcagca 636
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>ref|NM_191042.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 750

 Score =  200 bits (101), Expect = 3e-48
 Identities = 221/261 (84%)
 Strand = Plus / Minus

                                                                       
Query: 225 tcagcatccatctcttccaacgctgcctgcgctgctgccttggcctgctccagaagatca 284
           |||||||||||||| || | ||||||||| |||||  ||||||||||||||| |||||||
Sbjct: 746 tcagcatccatctcctcaagcgctgcctgagctgcaaccttggcctgctccaaaagatca 687

                                                                       
Query: 285 ctcggaaccttctcgtgctgacggttagattcctcacatacccagctcagttccagctca 344
              ||||||||||  ||||| || || ||||| ||||||| |||||| | ||||| ||||
Sbjct: 686 gcaggaaccttctgatgctggcgatttgattcatcacatatccagcttaattccaactca 627

                                                                       
Query: 345 aaagatttgtctttcgcttcgtcgtgcacaccataaattatcttggcaacctcaacgatg 404
           |||| |||||| || ||||| || || || |||||||| ||||| |||||||| || |||
Sbjct: 626 aaagctttgtccttagcttcatcatgtactccataaatgatctttgcaacctccacaatg 567

                                                                       
Query: 405 ccttccctgcaggttagctcagaaagcttcaatttctcaatctccgtttttgcagcttgt 464
           ||||||| |||||| ||||| ||||||||||| ||||| || || ||||||||||| |||
Sbjct: 566 ccttcccggcaggtaagctcggaaagcttcaacttctctatttcagtttttgcagcctgt 507

                                
Query: 465 ctacctttacccagagcagca 485
           || ||||||||||||||||||
Sbjct: 506 cttcctttacccagagcagca 486
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>ref|XM_475461.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 750

 Score =  190 bits (96), Expect = 3e-45
 Identities = 222/264 (84%)
 Strand = Plus / Minus

                                                                       
Query: 222 tagtcagcatccatctcttccaacgctgcctgcgctgctgccttggcctgctccagaaga 281
           ||||| || |||||||| || | ||||||||| || |||||||| ||||||||||  || 
Sbjct: 749 tagtctgcgtccatctcctcgagcgctgcctgggcggctgccttcgcctgctccacgagg 690

                                                                       
Query: 282 tcactcggaaccttctcgtgctgacggttagattcctcacatacccagctcagttccagc 341
           ||    ||||||||||| ||||| || || ||||| || |||||||||||||| ||||| 
Sbjct: 689 tcgtctggaaccttctcatgctggcgctttgattcatcgcatacccagctcagctccagt 630

                                                                       
Query: 342 tcaaaagatttgtctttcgcttcgtcgtgcacaccataaattatcttggcaacctcaacg 401
           |||||   ||||||||| |||||||| ||||| ||||| |||||||| ||||||||||| 
Sbjct: 629 tcaaagtctttgtctttagcttcgtcatgcactccatagattatctttgcaacctcaaca 570

                                                                       
Query: 402 atgccttccctgcaggttagctcagaaagcttcaatttctcaatctccgtttttgcagct 461
           |||||||| ||||| || ||||||||||| |||| |||||| ||||||||||||||||| 
Sbjct: 569 atgccttctctgcatgtaagctcagaaagattcagtttctctatctccgtttttgcagcc 510

                                   
Query: 462 tgtctacctttacccagagcagca 485
           ||||| ||||| ||||| ||||||
Sbjct: 509 tgtcttcctttccccagggcagca 486
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>gb|BT017777.1| Zea mays clone EL01N0503B10.c mRNA sequence
          Length = 1266

 Score =  176 bits (89), Expect = 4e-41
 Identities = 209/249 (83%)
 Strand = Plus / Minus

                                                                       
Query: 218 ttcttagtcagcatccatctcttccaacgctgcctgcgctgctgccttggcctgctccag 277
           ||||||||||||||||||||| || |  |||||||| || || || ||||||||||||| 
Sbjct: 939 ttcttagtcagcatccatctcctcaagagctgcctgagcagcagctttggcctgctccaa 880

                                                                       
Query: 278 aagatcactcggaaccttctcgtgctgacggttagattcctcacatacccagctcagttc 337
            || ||| | ||| ||||||  ||||||||||| ||||| ||||| | ||||||||  ||
Sbjct: 879 cagttcatttggacccttctgatgctgacggttcgattcatcacagatccagctcaactc 820

                                                                       
Query: 338 cagctcaaaagatttgtctttcgcttcgtcgtgcacaccataaattatcttggcaacctc 397
           || |||||||| |||||| ||||||||||| ||||| |||||||||||||| ||||| ||
Sbjct: 819 caactcaaaagctttgtccttcgcttcgtcatgcactccataaattatctttgcaacttc 760

                                                                       
Query: 398 aacgatgccttccctgcaggttagctcagaaagcttcaatttctcaatctccgtttttgc 457
           ||| |||||||||| |||||| ||||| ||||| ||||| || || ||||| || |||||
Sbjct: 759 aacaatgccttcccggcaggtaagctccgaaagtttcaacttttctatctcagtctttgc 700

                    
Query: 458 agcttgtct 466
           ||| |||||
Sbjct: 699 agcctgtct 691
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>gb|BT017004.1| Zea mays clone EK07D2310A08.c mRNA sequence
          Length = 1256

 Score =  172 bits (87), Expect = 7e-40
 Identities = 186/219 (84%)
 Strand = Plus / Minus

                                                                        
Query: 218  ttcttagtcagcatccatctcttccaacgctgcctgcgctgctgccttggcctgctccag 277
            ||||||||||||||||||||| || |  |||||||| || || || ||||||||||||| 
Sbjct: 1003 ttcttagtcagcatccatctcctcaagagctgcctgagcagcagctttggcctgctccaa 944

                                                                        
Query: 278  aagatcactcggaaccttctcgtgctgacggttagattcctcacatacccagctcagttc 337
             || ||| | ||||||||||  ||||||||||| ||||| ||||| | ||||||||  ||
Sbjct: 943  cagttcatttggaaccttctgatgctgacggttcgattcatcacagatccagctcaactc 884

                                                                        
Query: 338  cagctcaaaagatttgtctttcgcttcgtcgtgcacaccataaattatcttggcaacctc 397
            || |||||||| |||||| ||||||||||| ||||| |||||||||||||| ||||| ||
Sbjct: 883  caactcaaaagctttgtccttcgcttcgtcatgcactccataaattatctttgcaacttc 824

                                                   
Query: 398  aacgatgccttccctgcaggttagctcagaaagcttcaa 436
            ||| |||||||||| |||||| ||||| ||||| |||||
Sbjct: 823  aacaatgccttcccggcaggtaagctccgaaagtttcaa 785
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>gb|AY109645.1| Zea mays CL4356_2 mRNA sequence
          Length = 1252

 Score =  165 bits (83), Expect = 2e-37
 Identities = 203/243 (83%)
 Strand = Plus / Plus

                                                                       
Query: 218 ttcttagtcagcatccatctcttccaacgctgcctgcgctgctgccttggcctgctccag 277
           ||||||||||||||||||||| || |  |||||||| || || || ||||||||||||| 
Sbjct: 284 ttcttagtcagcatccatctcctcaagagctgcctgagcagcagctttggcctgctccaa 343

                                                                       
Query: 278 aagatcactcggaaccttctcgtgctgacggttagattcctcacatacccagctcagttc 337
            || ||| | ||||||||||  ||||| ||||| ||||| ||||| | ||||||||  ||
Sbjct: 344 cagttcatttggaaccttctgatgctggcggttcgattcatcacagatccagctcaactc 403

                                                                       
Query: 338 cagctcaaaagatttgtctttcgcttcgtcgtgcacaccataaattatcttggcaacctc 397
           || |||||||| |||||| ||||||||||| ||||| |||||||||||||| ||||| ||
Sbjct: 404 caactcaaaagctttgtccttcgcttcgtcatgcactccataaattatctttgcaacttc 463

                                                                       
Query: 398 aacgatgccttccctgcaggttagctcagaaagcttcaatttctcaatctccgtttttgc 457
           ||| |||||||| | |||||| ||||| ||||| ||||| || || ||||| || |||||
Sbjct: 464 aacaatgccttctcggcaggtaagctccgaaagtttcaacttttctatctcagtctttgc 523

              
Query: 458 agc 460
           |||
Sbjct: 524 agc 526
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                            
Query: 213      gtctcttcttagtcagcatccatctcttccaacgctgcctgcgctgctgccttggcctgc 272
                ||||| ||||| |||||||||||||| || | ||||||||| |||||  |||||||||||
Sbjct: 34468556 gtctcctcttaatcagcatccatctcctcaagcgctgcctgagctgcaaccttggcctgc 34468497

                            
Query: 273      tccagaagatca 284
                |||| |||||||
Sbjct: 34468496 tccaaaagatca 34468485



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                           
Query: 384      atcttggcaacctcaacgatgccttccctgcaggttagctcagaaagcttcaatttctc 442
                ||||| |||||||| || |||||||||| |||||| ||||| ||||||||||| |||||
Sbjct: 34467113 atctttgcaacctccacaatgccttcccggcaggtaagctcggaaagcttcaacttctc 34467055



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                     
Query: 449      cgtttttgcagcttgtctacctttacccagagcagca 485
                |||||||||||| ||||| ||||||||||||||||||
Sbjct: 34466262 cgtttttgcagcctgtcttcctttacccagagcagca 34466226



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 253      gcgctgctgccttggcctgc 272
                ||||||||||||||||||||
Sbjct: 33287030 gcgctgctgccttggcctgc 33287011
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>dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0468B07
          Length = 169071

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                          
Query: 213    gtctcttcttagtcagcatccatctcttccaacgctgcctgcgctgctgccttggcctgc 272
              ||||| ||||| |||||||||||||| || | ||||||||| |||||  |||||||||||
Sbjct: 150900 gtctcctcttaatcagcatccatctcctcaagcgctgcctgagctgcaaccttggcctgc 150841

                          
Query: 273    tccagaagatca 284
              |||| |||||||
Sbjct: 150840 tccaaaagatca 150829



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                         
Query: 384    atcttggcaacctcaacgatgccttccctgcaggttagctcagaaagcttcaatttctc 442
              ||||| |||||||| || |||||||||| |||||| ||||| ||||||||||| |||||
Sbjct: 149457 atctttgcaacctccacaatgccttcccggcaggtaagctcggaaagcttcaacttctc 149399



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                   
Query: 449    cgtttttgcagcttgtctacctttacccagagcagca 485
              |||||||||||| ||||| ||||||||||||||||||
Sbjct: 148606 cgtttttgcagcctgtcttcctttacccagagcagca 148570
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>dbj|AP003247.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0425G02
          Length = 155432

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                         
Query: 213   gtctcttcttagtcagcatccatctcttccaacgctgcctgcgctgctgccttggcctgc 272
             ||||| ||||| |||||||||||||| || | ||||||||| |||||  |||||||||||
Sbjct: 44275 gtctcctcttaatcagcatccatctcctcaagcgctgcctgagctgcaaccttggcctgc 44216

                         
Query: 273   tccagaagatca 284
             |||| |||||||
Sbjct: 44215 tccaaaagatca 44204



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                        
Query: 384   atcttggcaacctcaacgatgccttccctgcaggttagctcagaaagcttcaatttctc 442
             ||||| |||||||| || |||||||||| |||||| ||||| ||||||||||| |||||
Sbjct: 42832 atctttgcaacctccacaatgccttcccggcaggtaagctcggaaagcttcaacttctc 42774



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                  
Query: 449   cgtttttgcagcttgtctacctttacccagagcagca 485
             |||||||||||| ||||| ||||||||||||||||||
Sbjct: 41981 cgtttttgcagcctgtcttcctttacccagagcagca 41945
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>gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0088I06, complete sequence
          Length = 187651

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                         
Query: 384   atcttggcaacctcaacgatgccttccctgcaggttagctcagaaagcttcaatttctca 443
             ||||| ||||||||||| |||||||| ||||| || ||||||||||| |||| |||||| 
Sbjct: 46785 atctttgcaacctcaacaatgccttctctgcatgtaagctcagaaagattcagtttctct 46844

                   
Query: 444   atctcc 449
             ||||||
Sbjct: 46845 atctcc 46850



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                         
Query: 291   accttctcgtgctgacggttagattcctcacatacccagctcagttccagctcaaaagat 350
             |||||||| ||||| || || ||||| || |||||||||||||| ||||| |||||   |
Sbjct: 46196 accttctcatgctggcgctttgattcatcgcatacccagctcagctccagttcaaagtct 46255

                                          
Query: 351   ttgtctttcgcttcgtcgtgcacaccata 379
             |||||||| |||||||| ||||| |||||
Sbjct: 46256 ttgtctttagcttcgtcatgcactccata 46284



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 449   cgtttttgcagcttgtctacctttacccagagcagca 485
             |||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 47618 cgtttttgcagcctgtcttcctttccccagggcagca 47654
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>gb|AY459341.1| Oryza sativa (japonica cultivar-group) clone CL031105.6 R2R3-MYB gene
             region
          Length = 58956

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                         
Query: 384   atcttggcaacctcaacgatgccttccctgcaggttagctcagaaagcttcaatttctca 443
             ||||| ||||||||||| |||||||| ||||| || ||||||||||| |||| |||||| 
Sbjct: 34111 atctttgcaacctcaacaatgccttctctgcatgtaagctcagaaagattcagtttctct 34052

                   
Query: 444   atctcc 449
             ||||||
Sbjct: 34051 atctcc 34046



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 75/89 (84%)
 Strand = Plus / Minus

                                                                         
Query: 291   accttctcgtgctgacggttagattcctcacatacccagctcagttccagctcaaaagat 350
             |||||||| ||||| || || ||||| || |||||||||||||| ||||| |||||   |
Sbjct: 34700 accttctcatgctggcgctttgattcatcgcatacccagctcagctccagttcaaagtct 34641

                                          
Query: 351   ttgtctttcgcttcgtcgtgcacaccata 379
             |||||||| |||||||| ||||| |||||
Sbjct: 34640 ttgtctttagcttcgtcatgcactccata 34612



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 449   cgtttttgcagcttgtctacctttacccagagcagca 485
             |||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 33278 cgtttttgcagcctgtcttcctttccccagggcagca 33242
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                            
Query: 384      atcttggcaacctcaacgatgccttccctgcaggttagctcagaaagcttcaatttctca 443
                ||||| ||||||||||| |||||||| ||||| || ||||||||||| |||| |||||| 
Sbjct: 23978296 atctttgcaacctcaacaatgccttctctgcatgtaagctcagaaagattcagtttctct 23978355

                      
Query: 444      atctcc 449
                ||||||
Sbjct: 23978356 atctcc 23978361



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                            
Query: 291      accttctcgtgctgacggttagattcctcacatacccagctcagttccagctcaaaagat 350
                |||||||| ||||| || || ||||| || |||||||||||||| ||||| |||||   |
Sbjct: 23977707 accttctcatgctggcgctttgattcatcgcatacccagctcagctccagttcaaagtct 23977766

                                             
Query: 351      ttgtctttcgcttcgtcgtgcacaccata 379
                |||||||| |||||||| ||||| |||||
Sbjct: 23977767 ttgtctttagcttcgtcatgcactccata 23977795



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                     
Query: 449      cgtttttgcagcttgtctacctttacccagagcagca 485
                |||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 23979129 cgtttttgcagcctgtcttcctttccccagggcagca 23979165
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>gb|BT013996.1| Lycopersicon esculentum clone 133043F, mRNA sequence
          Length = 1134

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 90/112 (80%)
 Strand = Plus / Minus

                                                                       
Query: 288 ggaaccttctcgtgctgacggttagattcctcacatacccagctcagttccagctcaaaa 347
           ||||||||||  || || |||||||| || |||||||||||||||| ||| || ||||| 
Sbjct: 787 ggaaccttctgatgttggcggttagactcatcacatacccagctcatttcaagttcaaat 728

                                                               
Query: 348 gatttgtctttcgcttcgtcgtgcacaccataaattatcttggcaacctcaa 399
           |  |||||||| || || || || || || |||||||| || || |||||||
Sbjct: 727 gccttgtcttttgcctcatcatgtactccgtaaattatttttgctacctcaa 676
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>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 256     ctgctgccttggcctgctccag 277
               ||||||||||||||||||||||
Sbjct: 1904782 ctgctgccttggcctgctccag 1904761
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>ref|NM_128260.3| Arabidopsis thaliana PAG1; endopeptidase/ peptidase/ threonine
           endopeptidase AT2G27020 (PAG1) mRNA, complete cds
          Length = 1024

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 435 aatttctcaatctccgtttttgcagcttg 463
           ||||||||||| |||||||| ||||||||
Sbjct: 654 aatttctcaatttccgttttggcagcttg 626
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>gb|AC168148.15| Medicago truncatula clone mth2-80b11, complete sequence
          Length = 111889

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 422    ctcagaaagcttcaatttctc 442
              |||||||||||||||||||||
Sbjct: 108662 ctcagaaagcttcaatttctc 108642
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>gb|AC152407.19| Medicago truncatula clone mth2-77l23, complete sequence
          Length = 113470

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 422    ctcagaaagcttcaatttctc 442
              |||||||||||||||||||||
Sbjct: 102100 ctcagaaagcttcaatttctc 102120
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>emb|Y13693.1|ATY13693 Arabidopsis thaliana mRNA for proteasome subunit prc8
          Length = 958

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 435 aatttctcaatctccgtttttgcagcttg 463
           ||||||||||| |||||||| ||||||||
Sbjct: 579 aatttctcaatttccgttttggcagcttg 551
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>gb|AY124806.1| Arabidopsis thaliana At2g27020/T20P8.7 mRNA, complete cds
          Length = 750

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 435 aatttctcaatctccgtttttgcagcttg 463
           ||||||||||| |||||||| ||||||||
Sbjct: 536 aatttctcaatttccgttttggcagcttg 508
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>gb|AF375455.1| Arabidopsis thaliana At2g27020/T20P8.7 mRNA, complete cds
          Length = 935

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 435 aatttctcaatctccgtttttgcagcttg 463
           ||||||||||| |||||||| ||||||||
Sbjct: 569 aatttctcaatttccgttttggcagcttg 541
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>emb|BX819273.1|CNS0A9VK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB62ZH07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 837

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 435 aatttctcaatctccgtttttgcagcttg 463
           ||||||||||| |||||||| ||||||||
Sbjct: 467 aatttctcaatttccgttttggcagcttg 439
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>gb|AY088609.1| Arabidopsis thaliana clone 8342 mRNA, complete sequence
          Length = 1022

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 435 aatttctcaatctccgtttttgcagcttg 463
           ||||||||||| |||||||| ||||||||
Sbjct: 657 aatttctcaatttccgttttggcagcttg 629
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>gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence
          Length = 152439

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 389   ggcaacctcaacgatgccttc 409
             |||||||||||||||||||||
Sbjct: 55374 ggcaacctcaacgatgccttc 55394
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>gb|AF043528.1|AF043528 Arabidopsis thaliana 20S proteasome subunit PAG1 (PAG1) mRNA,
           complete cds
          Length = 958

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 435 aatttctcaatctccgtttttgcagcttg 463
           ||||||||||| |||||||| ||||||||
Sbjct: 579 aatttctcaatttccgttttggcagcttg 551
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>gb|AC168217.2| Mus musculus BAC clone RP24-498P8 from chromosome 9, complete sequence
          Length = 171426

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 279    agatcactcggaaccttctc 298
              ||||||||||||||||||||
Sbjct: 145719 agatcactcggaaccttctc 145738
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>gb|BC097109.1| Danio rerio zgc:114044, mRNA (cDNA clone MGC:114044 IMAGE:7416126),
           complete cds
          Length = 996

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 324 acccagctcagttccagctcaaaagatttgtctttc 359
           |||||||| || ||||||||||| | ||||||||||
Sbjct: 748 acccagctgagctccagctcaaaggctttgtctttc 713
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>gb|AC161490.7| Mus musculus chromosome 7, clone RP23-307M23, complete sequence
          Length = 169596

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     caaagacagatttttcaggt 24
             ||||||||||||||||||||
Sbjct: 61956 caaagacagatttttcaggt 61937
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>ref|NM_001030187.1| Danio rerio zgc:114044 (zgc:114044), mRNA
          Length = 996

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 324 acccagctcagttccagctcaaaagatttgtctttc 359
           |||||||| || ||||||||||| | ||||||||||
Sbjct: 748 acccagctgagctccagctcaaaggctttgtctttc 713
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 362     ttcgtcgtgcacaccataaa 381
               ||||||||||||||||||||
Sbjct: 2089197 ttcgtcgtgcacaccataaa 2089216
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>emb|AL353764.9| Human DNA sequence from clone RP11-440G5 on chromosome 9 Contains the
             NFIL3 gene for interleukin 3 regulated nuclear factor, a
             novel gene and two CpG islands, complete sequence
          Length = 170898

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 451   tttttgcagcttgtctacctttac 474
             |||||||| |||||||||||||||
Sbjct: 96884 tttttgcatcttgtctacctttac 96907
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>emb|AJ586898.1| Platanus acerifolia partial mRNA for polygalacturonase (plaa2 gene)
          Length = 1395

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 118  aacaacaacctgagctagtt 137
            ||||||||||||||||||||
Sbjct: 1290 aacaacaacctgagctagtt 1271
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>gb|AC092997.6| Homo sapiens 3 BAC RP11-711L14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 151059

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 133   tagtttttggaactcaaatgatat 156
             ||||||||||||||||||| ||||
Sbjct: 36166 tagtttttggaactcaaattatat 36189
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>gb|AC105937.2| Homo sapiens chromosome 3 clone RP11-45J19, complete sequence
          Length = 171621

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     aaatcaaagacagatttttc 20
             ||||||||||||||||||||
Sbjct: 83009 aaatcaaagacagatttttc 82990
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>gb|BC113948.1| Rattus norvegicus cDNA clone MGC:124733 IMAGE:7937870, complete cds
          Length = 6088

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 240  tccaacgctgcctgcgctgc 259
            ||||||||||||||||||||
Sbjct: 4410 tccaacgctgcctgcgctgc 4429
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>emb|BX511180.7| Zebrafish DNA sequence from clone CH211-221H1 in linkage group 3,
             complete sequence
          Length = 155448

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   tagtttttggaactcaaatg 152
             ||||||||||||||||||||
Sbjct: 52356 tagtttttggaactcaaatg 52337
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>ref|XM_340818.2| PREDICTED: Rattus norvegicus myosin, heavy polypeptide 4, skeletal
            muscle (predicted) (Myh4_predicted), mRNA
          Length = 5817

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 240  tccaacgctgcctgcgctgc 259
            ||||||||||||||||||||
Sbjct: 4327 tccaacgctgcctgcgctgc 4346
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>gb|AC009948.3| Homo sapiens BAC clone RP11-65L3 from 2, complete sequence
          Length = 172828

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    aaatcaaagacagatttttc 20
            ||||||||||||||||||||
Sbjct: 3044 aaatcaaagacagatttttc 3025
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>dbj|AP003406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1070A12
          Length = 148449

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   gcgctgctgccttggcctgc 272
             ||||||||||||||||||||
Sbjct: 80277 gcgctgctgccttggcctgc 80258
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>emb|Z69793.1|CER03A10 Caenorhabditis elegans Cosmid R03A10, complete sequence
          Length = 40594

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 135  gtttttggaactcaaatgatattc 158
            ||||||||||| ||||||||||||
Sbjct: 4544 gtttttggaacacaaatgatattc 4567
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>gb|AC137678.11| Mus musculus chromosome 9, clone RP24-484G16, complete sequence
          Length = 172337

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 279    agatcactcggaaccttctc 298
              ||||||||||||||||||||
Sbjct: 141992 agatcactcggaaccttctc 141973
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>gb|AF097313.1|AF097313 Xenopus laevis axin mRNA, complete cds
          Length = 2529

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 29  caggatttaatagaagattaagtg 52
           |||||| |||||||||||||||||
Sbjct: 839 caggatctaatagaagattaagtg 862
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>emb|BX119994.7| Mouse DNA sequence from clone RP23-272G10 on chromosome X, complete
             sequence
          Length = 174006

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 156   ttcgtcaaccggtcctgtatctct 179
             |||||||||| |||||||||||||
Sbjct: 47549 ttcgtcaacccgtcctgtatctct 47572
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>gb|AC154374.1| Mus musculus BAC clone RP23-81F24 from 9, complete sequence
          Length = 169272

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 261   gccttggcctgctccagaagatca 284
             ||||||||||| ||||||||||||
Sbjct: 71028 gccttggcctgatccagaagatca 71005
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>gb|M98497.1|CHKRHOPR Chicken rhodopsin gene, promoter region
          Length = 1925

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 407 ttccctgcaggttagctcag 426
           ||||||||||||||||||||
Sbjct: 268 ttccctgcaggttagctcag 249


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,303,380
Number of Sequences: 3902068
Number of extensions: 4303380
Number of successful extensions: 88168
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87979
Number of HSP's gapped (non-prelim): 189
length of query: 485
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 463
effective length of database: 17,147,199,772
effective search space: 7939153494436
effective search space used: 7939153494436
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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