ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart10f11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478166.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1683 Score = 113 bits (57), Expect = 4e-22 Identities = 144/173 (83%) Strand = Plus / Minus Query: 153 gaagccgacgagccgcttgaactccttcgccgacgagcccccttgggcgatgtcccgtct 212 |||||||||||||| |||||||||| ||||||||||||| || | ||||| ||||||||| Sbjct: 1478 gaagccgacgagcctcttgaactccgtcgccgacgagccgccgtcggcgacgtcccgtct 1419 Query: 213 cacctgctgcgccagggcttgagccgatctccttagctcgacggactccatggcctccct 272 ||||| || |||||| ||||| |||| ||| | |||| |||||||||| |||||||| Sbjct: 1418 caccttctccgccagcgcttgggccgtcgccctgatctcgccggactccatcgcctccct 1359 Query: 273 caccatccgttccacaacgggcctctcgcacacgtctttcatgtccagccccg 325 |||||||| |||| |||| |||||| |||| |||||||||||||||| Sbjct: 1358 caccatcctcgccacgacggcggcgtcgcacgcgtccttcatgtccagccccg 1306
>ref|XM_506345.1| PREDICTED Oryza sativa (japonica cultivar-group), P0477A12.31 mRNA Length = 1711 Score = 113 bits (57), Expect = 4e-22 Identities = 144/173 (83%) Strand = Plus / Minus Query: 153 gaagccgacgagccgcttgaactccttcgccgacgagcccccttgggcgatgtcccgtct 212 |||||||||||||| |||||||||| ||||||||||||| || | ||||| ||||||||| Sbjct: 1509 gaagccgacgagcctcttgaactccgtcgccgacgagccgccgtcggcgacgtcccgtct 1450 Query: 213 cacctgctgcgccagggcttgagccgatctccttagctcgacggactccatggcctccct 272 ||||| || |||||| ||||| |||| ||| | |||| |||||||||| |||||||| Sbjct: 1449 caccttctccgccagcgcttgggccgtcgccctgatctcgccggactccatcgcctccct 1390 Query: 273 caccatccgttccacaacgggcctctcgcacacgtctttcatgtccagccccg 325 |||||||| |||| |||| |||||| |||| |||||||||||||||| Sbjct: 1389 caccatcctcgccacgacggcggcgtcgcacgcgtccttcatgtccagccccg 1337
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 113 bits (57), Expect = 4e-22 Identities = 144/173 (83%) Strand = Plus / Minus Query: 153 gaagccgacgagccgcttgaactccttcgccgacgagcccccttgggcgatgtcccgtct 212 |||||||||||||| |||||||||| ||||||||||||| || | ||||| ||||||||| Sbjct: 18151373 gaagccgacgagcctcttgaactccgtcgccgacgagccgccgtcggcgacgtcccgtct 18151314 Query: 213 cacctgctgcgccagggcttgagccgatctccttagctcgacggactccatggcctccct 272 ||||| || |||||| ||||| |||| ||| | |||| |||||||||| |||||||| Sbjct: 18151313 caccttctccgccagcgcttgggccgtcgccctgatctcgccggactccatcgcctccct 18151254 Query: 273 caccatccgttccacaacgggcctctcgcacacgtctttcatgtccagccccg 325 |||||||| |||| |||| |||||| |||| |||||||||||||||| Sbjct: 18151253 caccatcctcgccacgacggcggcgtcgcacgcgtccttcatgtccagccccg 18151201 Score = 105 bits (53), Expect = 9e-20 Identities = 155/189 (82%) Strand = Plus / Minus Query: 137 tgctgagctcaatgatgaagccgacgagccgcttgaactccttcgccgacgagccccctt 196 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||| || | Sbjct: 17980932 tgctgagctccttgatgaacccgacgagccgctcgaactccgccgccgacgagccgccat 17980873 Query: 197 gggcgatgtcccgtctcacctgctgcgccagggcttgagccgatctccttagctcgacgg 256 ||||| |||| | ||||||| ||||||| || || ||||| ||| | |||| ||| Sbjct: 17980872 cggcgacgtcctgcctcacctcgcgcgccagcgcctgcgccgacgccctgatctcgccgg 17980813 Query: 257 actccatggcctccctcaccatccgttccacaacgggcctctcgcacacgtctttcatgt 316 ||||||| |||||||||||||||| ||||| |||| ||||||||||| ||||||| Sbjct: 17980812 actccatcgcctccctcaccatcctctccacgacggcggcgtcgcacacgtccttcatgt 17980753 Query: 317 ccagccccg 325 ||||||||| Sbjct: 17980752 ccagccccg 17980744 Score = 105 bits (53), Expect = 9e-20 Identities = 155/189 (82%) Strand = Plus / Minus Query: 137 tgctgagctcaatgatgaagccgacgagccgcttgaactccttcgccgacgagccccctt 196 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||| || | Sbjct: 17921811 tgctgagctccttgatgaacccgacgagccgctcgaactccgccgccgacgagccgccat 17921752 Query: 197 gggcgatgtcccgtctcacctgctgcgccagggcttgagccgatctccttagctcgacgg 256 ||||| |||| | ||||||| ||||||| || || ||||| ||| | |||| ||| Sbjct: 17921751 cggcgacgtcctgcctcacctcgcgcgccagcgcctgcgccgacgccctgatctcgccgg 17921692 Query: 257 actccatggcctccctcaccatccgttccacaacgggcctctcgcacacgtctttcatgt 316 ||||||| |||||||||||||||| ||||| |||| ||||||||||| ||||||| Sbjct: 17921691 actccatcgcctccctcaccatcctctccacgacggcggcgtcgcacacgtccttcatgt 17921632 Query: 317 ccagccccg 325 ||||||||| Sbjct: 17921631 ccagccccg 17921623 Score = 95.6 bits (48), Expect = 8e-17 Identities = 135/164 (82%) Strand = Plus / Plus Query: 162 gagccgcttgaactccttcgccgacgagcccccttgggcgatgtcccgtctcacctgctg 221 ||||| |||||||||| ||||||||||||| || | ||||| |||||||| || |||||| Sbjct: 18060196 gagcctcttgaactccgtcgccgacgagccgccgtcggcgacgtcccgtcccaactgctg 18060255 Query: 222 cgccagggcttgagccgatctccttagctcgacggactccatggcctccctcaccatccg 281 || ||| ||||| ||||| ||| | |||| |||||||||| |||||||||||||||| Sbjct: 18060256 cgacagagcttgtgccgacgccctgatctcgccggactccatcgcctccctcaccatcct 18060315 Query: 282 ttccacaacgggcctctcgcacacgtctttcatgtccagccccg 325 ||| |||| ||||||||||| |||||||||||||||| Sbjct: 18060316 cgccaagacggcggcgtcgcacacgtccttcatgtccagccccg 18060359 Score = 91.7 bits (46), Expect = 1e-15 Identities = 136/166 (81%) Strand = Plus / Minus Query: 160 acgagccgcttgaactccttcgccgacgagcccccttgggcgatgtcccgtctcacctgc 219 |||||||||||||||||| || ||||||||| || | ||||| |||||| ||||||| | Sbjct: 17893508 acgagccgcttgaactccgccgtcgacgagccaccgtcggcgacgtcccgcctcacctcc 17893449 Query: 220 tgcgccagggcttgagccgatctccttagctcgacggactccatggcctccctcaccatc 279 ||||||| || |||||||| ||| | || | |||||||||| |||||||| |||||| Sbjct: 17893448 cgcgccagcgcctgagccgacgccctgatctggccggactccatcgcctcccttaccatc 17893389 Query: 280 cgttccacaacgggcctctcgcacacgtctttcatgtccagccccg 325 | ||||||||| ||||||||||| |||||||||||||||| Sbjct: 17893388 ctcgccacaacggcggcgtcgcacacgtccttcatgtccagccccg 17893343 Score = 87.7 bits (44), Expect = 2e-14 Identities = 143/176 (81%) Strand = Plus / Minus Query: 150 gatgaagccgacgagccgcttgaactccttcgccgacgagcccccttgggcgatgtcccg 209 ||||||||||||||||| ||| | |||| ||||||||||||| || | ||||| ||||| Sbjct: 18105145 gatgaagccgacgagcctcttcagctccatcgccgacgagccaccctcggcgacgtccct 18105086 Query: 210 tctcacctgctgcgccagggcttgagccgatctccttagctcgacggactccatggcctc 269 |||| |||| |||||| | |||||||| ||| | |||| |||||||||| ||||| Sbjct: 18105085 cctcaactgccgcgccaccgactgagccgacgccctgatctcgccggactccatcgcctc 18105026 Query: 270 cctcaccatccgttccacaacgggcctctcgcacacgtctttcatgtccagccccg 325 ||||||||||| |||| |||| ||||||||||| |||||||||||||||| Sbjct: 18105025 cctcaccatcctcgccacgacggcggcgtcgcacacgtccttcatgtccagccccg 18104970 Score = 79.8 bits (40), Expect = 5e-12 Identities = 106/128 (82%) Strand = Plus / Plus Query: 198 ggcgatgtcccgtctcacctgctgcgccagggcttgagccgatctccttagctcgacgga 257 |||||||||||| |||| |||| ||||||| || |||||||| ||| | ||| |||| Sbjct: 18071377 ggcgatgtcccgcctcagctgccgcgccagcgcctgagccgacgccctgatctccgcgga 18071436 Query: 258 ctccatggcctccctcaccatccgttccacaacgggcctctcgcacacgtctttcatgtc 317 |||||| |||||||||||||||| ||||| |||| ||||||||||| |||||||| Sbjct: 18071437 ctccatcgcctccctcaccatcctctccacgacggcggcgtcgcacacgtccttcatgtc 18071496 Query: 318 cagccccg 325 |||||||| Sbjct: 18071497 cagccccg 18071504 Score = 69.9 bits (35), Expect = 5e-09 Identities = 146/183 (79%) Strand = Plus / Plus Query: 137 tgctgagctcaatgatgaagccgacgagccgcttgaactccttcgccgacgagccccctt 196 |||||||||| ||||||||||||||||||||| |||||| ||||||||| || || | Sbjct: 8379926 tgctgagctccctgatgaagccgacgagccgctcaaactccaacgccgacgaaccgccgt 8379985 Query: 197 gggcgatgtcccgtctcacctgctgcgccagggcttgagccgatctccttagctcgacgg 256 || ||||||| ||||||||| ||||||| |||| || ||||| | |||| ||| Sbjct: 8379986 caccggtgtcccgcttcacctgctccgccaggcgacgagcagacctcctgatctcgccgg 8380045 Query: 257 actccatggcctccctcaccatccgttccacaacgggcctctcgcacacgtctttcatgt 316 ||||||| |||||| | ||| || ||||| ||| |||||||||| |||| ||||||| Sbjct: 8380046 actccatcgcctccttgaccgacctctccaccacgcccctctcgcacgcgtccttcatgt 8380105 Query: 317 cca 319 ||| Sbjct: 8380106 cca 8380108
>dbj|AP005190.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0477A12 Length = 138141 Score = 113 bits (57), Expect = 4e-22 Identities = 144/173 (83%) Strand = Plus / Minus Query: 153 gaagccgacgagccgcttgaactccttcgccgacgagcccccttgggcgatgtcccgtct 212 |||||||||||||| |||||||||| ||||||||||||| || | ||||| ||||||||| Sbjct: 86679 gaagccgacgagcctcttgaactccgtcgccgacgagccgccgtcggcgacgtcccgtct 86620 Query: 213 cacctgctgcgccagggcttgagccgatctccttagctcgacggactccatggcctccct 272 ||||| || |||||| ||||| |||| ||| | |||| |||||||||| |||||||| Sbjct: 86619 caccttctccgccagcgcttgggccgtcgccctgatctcgccggactccatcgcctccct 86560 Query: 273 caccatccgttccacaacgggcctctcgcacacgtctttcatgtccagccccg 325 |||||||| |||| |||| |||||| |||| |||||||||||||||| Sbjct: 86559 caccatcctcgccacgacggcggcgtcgcacgcgtccttcatgtccagccccg 86507 Score = 87.7 bits (44), Expect = 2e-14 Identities = 143/176 (81%) Strand = Plus / Minus Query: 150 gatgaagccgacgagccgcttgaactccttcgccgacgagcccccttgggcgatgtcccg 209 ||||||||||||||||| ||| | |||| ||||||||||||| || | ||||| ||||| Sbjct: 40451 gatgaagccgacgagcctcttcagctccatcgccgacgagccaccctcggcgacgtccct 40392 Query: 210 tctcacctgctgcgccagggcttgagccgatctccttagctcgacggactccatggcctc 269 |||| |||| |||||| | |||||||| ||| | |||| |||||||||| ||||| Sbjct: 40391 cctcaactgccgcgccaccgactgagccgacgccctgatctcgccggactccatcgcctc 40332 Query: 270 cctcaccatccgttccacaacgggcctctcgcacacgtctttcatgtccagccccg 325 ||||||||||| |||| |||| ||||||||||| |||||||||||||||| Sbjct: 40331 cctcaccatcctcgccacgacggcggcgtcgcacacgtccttcatgtccagccccg 40276 Score = 79.8 bits (40), Expect = 5e-12 Identities = 106/128 (82%) Strand = Plus / Plus Query: 198 ggcgatgtcccgtctcacctgctgcgccagggcttgagccgatctccttagctcgacgga 257 |||||||||||| |||| |||| ||||||| || |||||||| ||| | ||| |||| Sbjct: 6683 ggcgatgtcccgcctcagctgccgcgccagcgcctgagccgacgccctgatctccgcgga 6742 Query: 258 ctccatggcctccctcaccatccgttccacaacgggcctctcgcacacgtctttcatgtc 317 |||||| |||||||||||||||| ||||| |||| ||||||||||| |||||||| Sbjct: 6743 ctccatcgcctccctcaccatcctctccacgacggcggcgtcgcacacgtccttcatgtc 6802 Query: 318 cagccccg 325 |||||||| Sbjct: 6803 cagccccg 6810
>dbj|AK106006.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-A06, full insert sequence Length = 1683 Score = 113 bits (57), Expect = 4e-22 Identities = 144/173 (83%) Strand = Plus / Minus Query: 153 gaagccgacgagccgcttgaactccttcgccgacgagcccccttgggcgatgtcccgtct 212 |||||||||||||| |||||||||| ||||||||||||| || | ||||| ||||||||| Sbjct: 1478 gaagccgacgagcctcttgaactccgtcgccgacgagccgccgtcggcgacgtcccgtct 1419 Query: 213 cacctgctgcgccagggcttgagccgatctccttagctcgacggactccatggcctccct 272 ||||| || |||||| ||||| |||| ||| | |||| |||||||||| |||||||| Sbjct: 1418 caccttctccgccagcgcttgggccgtcgccctgatctcgccggactccatcgcctccct 1359 Query: 273 caccatccgttccacaacgggcctctcgcacacgtctttcatgtccagccccg 325 |||||||| |||| |||| |||||| |||| |||||||||||||||| Sbjct: 1358 caccatcctcgccacgacggcggcgtcgcacgcgtccttcatgtccagccccg 1306
>dbj|AK072018.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106P09, full insert sequence Length = 1706 Score = 113 bits (57), Expect = 4e-22 Identities = 144/173 (83%) Strand = Plus / Minus Query: 153 gaagccgacgagccgcttgaactccttcgccgacgagcccccttgggcgatgtcccgtct 212 |||||||||||||| |||||||||| ||||||||||||| || | ||||| ||||||||| Sbjct: 1504 gaagccgacgagcctcttgaactccgtcgccgacgagccgccgtcggcgacgtcccgtct 1445 Query: 213 cacctgctgcgccagggcttgagccgatctccttagctcgacggactccatggcctccct 272 ||||| || |||||| ||||| |||| ||| | |||| |||||||||| |||||||| Sbjct: 1444 caccttctccgccagcgcttgggccgtcgccctgatctcgccggactccatcgcctccct 1385 Query: 273 caccatccgttccacaacgggcctctcgcacacgtctttcatgtccagccccg 325 |||||||| |||| |||| |||||| |||| |||||||||||||||| Sbjct: 1384 caccatcctcgccacgacggcggcgtcgcacgcgtccttcatgtccagccccg 1332
>ref|XM_478140.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1461 Score = 105 bits (53), Expect = 9e-20 Identities = 155/189 (82%) Strand = Plus / Minus Query: 137 tgctgagctcaatgatgaagccgacgagccgcttgaactccttcgccgacgagccccctt 196 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||| || | Sbjct: 1429 tgctgagctccttgatgaacccgacgagccgctcgaactccgccgccgacgagccgccat 1370 Query: 197 gggcgatgtcccgtctcacctgctgcgccagggcttgagccgatctccttagctcgacgg 256 ||||| |||| | ||||||| ||||||| || || ||||| ||| | |||| ||| Sbjct: 1369 cggcgacgtcctgcctcacctcgcgcgccagcgcctgcgccgacgccctgatctcgccgg 1310 Query: 257 actccatggcctccctcaccatccgttccacaacgggcctctcgcacacgtctttcatgt 316 ||||||| |||||||||||||||| ||||| |||| ||||||||||| ||||||| Sbjct: 1309 actccatcgcctccctcaccatcctctccacgacggcggcgtcgcacacgtccttcatgt 1250 Query: 317 ccagccccg 325 ||||||||| Sbjct: 1249 ccagccccg 1241
>ref|XM_478130.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1461 Score = 105 bits (53), Expect = 9e-20 Identities = 155/189 (82%) Strand = Plus / Minus Query: 137 tgctgagctcaatgatgaagccgacgagccgcttgaactccttcgccgacgagccccctt 196 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||| || | Sbjct: 1429 tgctgagctccttgatgaacccgacgagccgctcgaactccgccgccgacgagccgccat 1370 Query: 197 gggcgatgtcccgtctcacctgctgcgccagggcttgagccgatctccttagctcgacgg 256 ||||| |||| | ||||||| ||||||| || || ||||| ||| | |||| ||| Sbjct: 1369 cggcgacgtcctgcctcacctcgcgcgccagcgcctgcgccgacgccctgatctcgccgg 1310 Query: 257 actccatggcctccctcaccatccgttccacaacgggcctctcgcacacgtctttcatgt 316 ||||||| |||||||||||||||| ||||| |||| ||||||||||| ||||||| Sbjct: 1309 actccatcgcctccctcaccatcctctccacgacggcggcgtcgcacacgtccttcatgt 1250 Query: 317 ccagccccg 325 ||||||||| Sbjct: 1249 ccagccccg 1241
>dbj|AP004348.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0683C09 Length = 185139 Score = 105 bits (53), Expect = 9e-20 Identities = 155/189 (82%) Strand = Plus / Minus Query: 137 tgctgagctcaatgatgaagccgacgagccgcttgaactccttcgccgacgagccccctt 196 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||| || | Sbjct: 148803 tgctgagctccttgatgaacccgacgagccgctcgaactccgccgccgacgagccgccat 148744 Query: 197 gggcgatgtcccgtctcacctgctgcgccagggcttgagccgatctccttagctcgacgg 256 ||||| |||| | ||||||| ||||||| || || ||||| ||| | |||| ||| Sbjct: 148743 cggcgacgtcctgcctcacctcgcgcgccagcgcctgcgccgacgccctgatctcgccgg 148684 Query: 257 actccatggcctccctcaccatccgttccacaacgggcctctcgcacacgtctttcatgt 316 ||||||| |||||||||||||||| ||||| |||| ||||||||||| ||||||| Sbjct: 148683 actccatcgcctccctcaccatcctctccacgacggcggcgtcgcacacgtccttcatgt 148624 Query: 317 ccagccccg 325 ||||||||| Sbjct: 148623 ccagccccg 148615 Score = 91.7 bits (46), Expect = 1e-15 Identities = 136/166 (81%) Strand = Plus / Minus Query: 160 acgagccgcttgaactccttcgccgacgagcccccttgggcgatgtcccgtctcacctgc 219 |||||||||||||||||| || ||||||||| || | ||||| |||||| ||||||| | Sbjct: 120500 acgagccgcttgaactccgccgtcgacgagccaccgtcggcgacgtcccgcctcacctcc 120441 Query: 220 tgcgccagggcttgagccgatctccttagctcgacggactccatggcctccctcaccatc 279 ||||||| || |||||||| ||| | || | |||||||||| |||||||| |||||| Sbjct: 120440 cgcgccagcgcctgagccgacgccctgatctggccggactccatcgcctcccttaccatc 120381 Query: 280 cgttccacaacgggcctctcgcacacgtctttcatgtccagccccg 325 | ||||||||| ||||||||||| |||||||||||||||| Sbjct: 120380 ctcgccacaacggcggcgtcgcacacgtccttcatgtccagccccg 120335
>dbj|AP005515.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0064M11 Length = 164263 Score = 105 bits (53), Expect = 9e-20 Identities = 155/189 (82%) Strand = Plus / Minus Query: 137 tgctgagctcaatgatgaagccgacgagccgcttgaactccttcgccgacgagccccctt 196 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||| || | Sbjct: 59091 tgctgagctccttgatgaacccgacgagccgctcgaactccgccgccgacgagccgccat 59032 Query: 197 gggcgatgtcccgtctcacctgctgcgccagggcttgagccgatctccttagctcgacgg 256 ||||| |||| | ||||||| ||||||| || || ||||| ||| | |||| ||| Sbjct: 59031 cggcgacgtcctgcctcacctcgcgcgccagcgcctgcgccgacgccctgatctcgccgg 58972 Query: 257 actccatggcctccctcaccatccgttccacaacgggcctctcgcacacgtctttcatgt 316 ||||||| |||||||||||||||| ||||| |||| ||||||||||| ||||||| Sbjct: 58971 actccatcgcctccctcaccatcctctccacgacggcggcgtcgcacacgtccttcatgt 58912 Query: 317 ccagccccg 325 ||||||||| Sbjct: 58911 ccagccccg 58903 Score = 95.6 bits (48), Expect = 8e-17 Identities = 135/164 (82%) Strand = Plus / Plus Query: 162 gagccgcttgaactccttcgccgacgagcccccttgggcgatgtcccgtctcacctgctg 221 ||||| |||||||||| ||||||||||||| || | ||||| |||||||| || |||||| Sbjct: 138355 gagcctcttgaactccgtcgccgacgagccgccgtcggcgacgtcccgtcccaactgctg 138414 Query: 222 cgccagggcttgagccgatctccttagctcgacggactccatggcctccctcaccatccg 281 || ||| ||||| ||||| ||| | |||| |||||||||| |||||||||||||||| Sbjct: 138415 cgacagagcttgtgccgacgccctgatctcgccggactccatcgcctccctcaccatcct 138474 Query: 282 ttccacaacgggcctctcgcacacgtctttcatgtccagccccg 325 ||| |||| ||||||||||| |||||||||||||||| Sbjct: 138475 cgccaagacggcggcgtcgcacacgtccttcatgtccagccccg 138518 Score = 79.8 bits (40), Expect = 5e-12 Identities = 106/128 (82%) Strand = Plus / Plus Query: 198 ggcgatgtcccgtctcacctgctgcgccagggcttgagccgatctccttagctcgacgga 257 |||||||||||| |||| |||| ||||||| || |||||||| ||| | ||| |||| Sbjct: 149536 ggcgatgtcccgcctcagctgccgcgccagcgcctgagccgacgccctgatctccgcgga 149595 Query: 258 ctccatggcctccctcaccatccgttccacaacgggcctctcgcacacgtctttcatgtc 317 |||||| |||||||||||||||| ||||| |||| ||||||||||| |||||||| Sbjct: 149596 ctccatcgcctccctcaccatcctctccacgacggcggcgtcgcacacgtccttcatgtc 149655 Query: 318 cagccccg 325 |||||||| Sbjct: 149656 cagccccg 149663
>ref|XM_478152.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1449 Score = 95.6 bits (48), Expect = 8e-17 Identities = 135/164 (82%) Strand = Plus / Minus Query: 162 gagccgcttgaactccttcgccgacgagcccccttgggcgatgtcccgtctcacctgctg 221 ||||| |||||||||| ||||||||||||| || | ||||| |||||||| || |||||| Sbjct: 1386 gagcctcttgaactccgtcgccgacgagccgccgtcggcgacgtcccgtcccaactgctg 1327 Query: 222 cgccagggcttgagccgatctccttagctcgacggactccatggcctccctcaccatccg 281 || ||| ||||| ||||| ||| | |||| |||||||||| |||||||||||||||| Sbjct: 1326 cgacagagcttgtgccgacgccctgatctcgccggactccatcgcctccctcaccatcct 1267 Query: 282 ttccacaacgggcctctcgcacacgtctttcatgtccagccccg 325 ||| |||| ||||||||||| |||||||||||||||| Sbjct: 1266 cgccaagacggcggcgtcgcacacgtccttcatgtccagccccg 1223
>ref|XM_450076.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1579 Score = 93.7 bits (47), Expect = 3e-16 Identities = 65/71 (91%) Strand = Plus / Minus Query: 255 ggactccatggcctccctcaccatccgttccacaacgggcctctcgcacacgtctttcat 314 |||||||||||||||||||||||||| ||||| |||| ||| ||||||||||| ||||| Sbjct: 1342 ggactccatggcctccctcaccatcctctccacgacggccctgtcgcacacgtccttcat 1283 Query: 315 gtccagccccg 325 ||||||||||| Sbjct: 1282 gtccagccccg 1272 Score = 40.1 bits (20), Expect = 4.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 138 gctgagctcaatgatgaagccgacgagccgct 169 ||||||||| |||||||||||||||| |||| Sbjct: 1459 gctgagctcgttgatgaagccgacgaggcgct 1428
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 93.7 bits (47), Expect = 3e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 255 ggactccatggcctccctcaccatccgttccacaacgggcctctcgcacacgtctttcat 314 |||||||||||||||||||||||||| ||||| |||| ||| ||||||||||| ||||| Sbjct: 1450727 ggactccatggcctccctcaccatcctctccacgacggccctgtcgcacacgtccttcat 1450786 Query: 315 gtccagccccg 325 ||||||||||| Sbjct: 1450787 gtccagccccg 1450797 Score = 40.1 bits (20), Expect = 4.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 138 gctgagctcaatgatgaagccgacgagccgct 169 ||||||||| |||||||||||||||| |||| Sbjct: 1450610 gctgagctcgttgatgaagccgacgaggcgct 1450641
>dbj|AP005744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1512_E04 Length = 157848 Score = 93.7 bits (47), Expect = 3e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 255 ggactccatggcctccctcaccatccgttccacaacgggcctctcgcacacgtctttcat 314 |||||||||||||||||||||||||| ||||| |||| ||| ||||||||||| ||||| Sbjct: 68840 ggactccatggcctccctcaccatcctctccacgacggccctgtcgcacacgtccttcat 68899 Query: 315 gtccagccccg 325 ||||||||||| Sbjct: 68900 gtccagccccg 68910 Score = 40.1 bits (20), Expect = 4.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 138 gctgagctcaatgatgaagccgacgagccgct 169 ||||||||| |||||||||||||||| |||| Sbjct: 68723 gctgagctcgttgatgaagccgacgaggcgct 68754
>dbj|AK059022.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-B05, full insert sequence Length = 1579 Score = 93.7 bits (47), Expect = 3e-16 Identities = 65/71 (91%) Strand = Plus / Minus Query: 255 ggactccatggcctccctcaccatccgttccacaacgggcctctcgcacacgtctttcat 314 |||||||||||||||||||||||||| ||||| |||| ||| ||||||||||| ||||| Sbjct: 1342 ggactccatggcctccctcaccatcctctccacgacggccctgtcgcacacgtccttcat 1283 Query: 315 gtccagccccg 325 ||||||||||| Sbjct: 1282 gtccagccccg 1272 Score = 40.1 bits (20), Expect = 4.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 138 gctgagctcaatgatgaagccgacgagccgct 169 ||||||||| |||||||||||||||| |||| Sbjct: 1459 gctgagctcgttgatgaagccgacgaggcgct 1428
>ref|XM_478126.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1458 Score = 91.7 bits (46), Expect = 1e-15 Identities = 136/166 (81%) Strand = Plus / Minus Query: 160 acgagccgcttgaactccttcgccgacgagcccccttgggcgatgtcccgtctcacctgc 219 |||||||||||||||||| || ||||||||| || | ||||| |||||| ||||||| | Sbjct: 1376 acgagccgcttgaactccgccgtcgacgagccaccgtcggcgacgtcccgcctcacctcc 1317 Query: 220 tgcgccagggcttgagccgatctccttagctcgacggactccatggcctccctcaccatc 279 ||||||| || |||||||| ||| | || | |||||||||| |||||||| |||||| Sbjct: 1316 cgcgccagcgcctgagccgacgccctgatctggccggactccatcgcctcccttaccatc 1257 Query: 280 cgttccacaacgggcctctcgcacacgtctttcatgtccagccccg 325 | ||||||||| ||||||||||| |||||||||||||||| Sbjct: 1256 ctcgccacaacggcggcgtcgcacacgtccttcatgtccagccccg 1211
>ref|XM_478159.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1473 Score = 87.7 bits (44), Expect = 2e-14 Identities = 143/176 (81%) Strand = Plus / Minus Query: 150 gatgaagccgacgagccgcttgaactccttcgccgacgagcccccttgggcgatgtcccg 209 ||||||||||||||||| ||| | |||| ||||||||||||| || | ||||| ||||| Sbjct: 1422 gatgaagccgacgagcctcttcagctccatcgccgacgagccaccctcggcgacgtccct 1363 Query: 210 tctcacctgctgcgccagggcttgagccgatctccttagctcgacggactccatggcctc 269 |||| |||| |||||| | |||||||| ||| | |||| |||||||||| ||||| Sbjct: 1362 cctcaactgccgcgccaccgactgagccgacgccctgatctcgccggactccatcgcctc 1303 Query: 270 cctcaccatccgttccacaacgggcctctcgcacacgtctttcatgtccagccccg 325 ||||||||||| |||| |||| ||||||||||| |||||||||||||||| Sbjct: 1302 cctcaccatcctcgccacgacggcggcgtcgcacacgtccttcatgtccagccccg 1247
>ref|XM_478153.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1553 Score = 79.8 bits (40), Expect = 5e-12 Identities = 106/128 (82%) Strand = Plus / Minus Query: 198 ggcgatgtcccgtctcacctgctgcgccagggcttgagccgatctccttagctcgacgga 257 |||||||||||| |||| |||| ||||||| || |||||||| ||| | ||| |||| Sbjct: 1274 ggcgatgtcccgcctcagctgccgcgccagcgcctgagccgacgccctgatctccgcgga 1215 Query: 258 ctccatggcctccctcaccatccgttccacaacgggcctctcgcacacgtctttcatgtc 317 |||||| |||||||||||||||| ||||| |||| ||||||||||| |||||||| Sbjct: 1214 ctccatcgcctccctcaccatcctctccacgacggcggcgtcgcacacgtccttcatgtc 1155 Query: 318 cagccccg 325 |||||||| Sbjct: 1154 cagccccg 1147
>dbj|AK060228.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-G12, full insert sequence Length = 1553 Score = 79.8 bits (40), Expect = 5e-12 Identities = 106/128 (82%) Strand = Plus / Minus Query: 198 ggcgatgtcccgtctcacctgctgcgccagggcttgagccgatctccttagctcgacgga 257 |||||||||||| |||| |||| ||||||| || |||||||| ||| | ||| |||| Sbjct: 1274 ggcgatgtcccgcctcagctgccgcgccagcgcctgagccgacgccctgatctccgcgga 1215 Query: 258 ctccatggcctccctcaccatccgttccacaacgggcctctcgcacacgtctttcatgtc 317 |||||| |||||||||||||||| ||||| |||| ||||||||||| |||||||| Sbjct: 1214 ctccatcgcctccctcaccatcctctccacgacggcggcgtcgcacacgtccttcatgtc 1155 Query: 318 cagccccg 325 |||||||| Sbjct: 1154 cagccccg 1147
>emb|AJ234486.1|HVU234486 Hordeum vulgare genomic DNA fragment; clone MWG0527 Length = 580 Score = 73.8 bits (37), Expect = 3e-10 Identities = 62/71 (87%) Strand = Plus / Minus Query: 255 ggactccatggcctccctcaccatccgttccacaacgggcctctcgcacacgtctttcat 314 ||||||||||| ||||||||||||| ||||| |||| ||| || |||||||| ||||| Sbjct: 237 ggactccatggsctccctcaccatcttctccaccacggccctgtcacacacgtccttcat 178 Query: 315 gtccagccccg 325 ||||||||||| Sbjct: 177 gtccagccccg 167
>ref|NM_186853.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1716 Score = 69.9 bits (35), Expect = 5e-09 Identities = 146/183 (79%) Strand = Plus / Minus Query: 137 tgctgagctcaatgatgaagccgacgagccgcttgaactccttcgccgacgagccccctt 196 |||||||||| ||||||||||||||||||||| |||||| ||||||||| || || | Sbjct: 1666 tgctgagctccctgatgaagccgacgagccgctcaaactccaacgccgacgaaccgccgt 1607 Query: 197 gggcgatgtcccgtctcacctgctgcgccagggcttgagccgatctccttagctcgacgg 256 || ||||||| ||||||||| ||||||| |||| || ||||| | |||| ||| Sbjct: 1606 caccggtgtcccgcttcacctgctccgccaggcgacgagcagacctcctgatctcgccgg 1547 Query: 257 actccatggcctccctcaccatccgttccacaacgggcctctcgcacacgtctttcatgt 316 ||||||| |||||| | ||| || ||||| ||| |||||||||| |||| ||||||| Sbjct: 1546 actccatcgcctccttgaccgacctctccaccacgcccctctcgcacgcgtccttcatgt 1487 Query: 317 cca 319 ||| Sbjct: 1486 cca 1484
>dbj|AP005183.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0021G06 Length = 137678 Score = 69.9 bits (35), Expect = 5e-09 Identities = 146/183 (79%) Strand = Plus / Plus Query: 137 tgctgagctcaatgatgaagccgacgagccgcttgaactccttcgccgacgagccccctt 196 |||||||||| ||||||||||||||||||||| |||||| ||||||||| || || | Sbjct: 85024 tgctgagctccctgatgaagccgacgagccgctcaaactccaacgccgacgaaccgccgt 85083 Query: 197 gggcgatgtcccgtctcacctgctgcgccagggcttgagccgatctccttagctcgacgg 256 || ||||||| ||||||||| ||||||| |||| || ||||| | |||| ||| Sbjct: 85084 caccggtgtcccgcttcacctgctccgccaggcgacgagcagacctcctgatctcgccgg 85143 Query: 257 actccatggcctccctcaccatccgttccacaacgggcctctcgcacacgtctttcatgt 316 ||||||| |||||| | ||| || ||||| ||| |||||||||| |||| ||||||| Sbjct: 85144 actccatcgcctccttgaccgacctctccaccacgcccctctcgcacgcgtccttcatgt 85203 Query: 317 cca 319 ||| Sbjct: 85204 cca 85206
>dbj|AP005178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0056I06 Length = 138653 Score = 69.9 bits (35), Expect = 5e-09 Identities = 146/183 (79%) Strand = Plus / Plus Query: 137 tgctgagctcaatgatgaagccgacgagccgcttgaactccttcgccgacgagccccctt 196 |||||||||| ||||||||||||||||||||| |||||| ||||||||| || || | Sbjct: 11519 tgctgagctccctgatgaagccgacgagccgctcaaactccaacgccgacgaaccgccgt 11578 Query: 197 gggcgatgtcccgtctcacctgctgcgccagggcttgagccgatctccttagctcgacgg 256 || ||||||| ||||||||| ||||||| |||| || ||||| | |||| ||| Sbjct: 11579 caccggtgtcccgcttcacctgctccgccaggcgacgagcagacctcctgatctcgccgg 11638 Query: 257 actccatggcctccctcaccatccgttccacaacgggcctctcgcacacgtctttcatgt 316 ||||||| |||||| | ||| || ||||| ||| |||||||||| |||| ||||||| Sbjct: 11639 actccatcgcctccttgaccgacctctccaccacgcccctctcgcacgcgtccttcatgt 11698 Query: 317 cca 319 ||| Sbjct: 11699 cca 11701
>ref|XM_951398.1| Neurospora crassa OR74A hypothetical protein (NCU01813.1) partial mRNA Length = 2424 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 218 gctgcgccagggcttgagccga 239 |||||||||||||||||||||| Sbjct: 1504 gctgcgccagggcttgagccga 1483
>ref|XM_328251.1| Neurospora crassa OR74A hypothetical protein (NCU01813.1) partial mRNA Length = 2424 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 218 gctgcgccagggcttgagccga 239 |||||||||||||||||||||| Sbjct: 1504 gctgcgccagggcttgagccga 1483
>emb|BX284761.1|NCB8B8 Neurospora crassa DNA linkage group II BAC clone B8B8 Length = 54903 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 218 gctgcgccagggcttgagccga 239 |||||||||||||||||||||| Sbjct: 45356 gctgcgccagggcttgagccga 45335
>emb|AL353072.8| Human DNA sequence from clone RP11-489C13 on chromosome 1q31.1-31.3 Contains a translocase of inner mitochondrial membrane 17 homolog A (yeast) (TIMM17A) pseudogene, complete sequence Length = 171682 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 262 atggcctccctcaccatccgttcc 285 |||||||||| ||||||||||||| Sbjct: 73676 atggcctcccgcaccatccgttcc 73653
>gb|AC091930.3| Homo sapiens chromosome 5 clone RP11-2A20, complete sequence Length = 167826 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 aaatgtcatttcaaactggcattg 24 ||||||||||| |||||||||||| Sbjct: 83090 aaatgtcatttaaaactggcattg 83113 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,404,143 Number of Sequences: 3902068 Number of extensions: 2404143 Number of successful extensions: 37799 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37672 Number of HSP's gapped (non-prelim): 93 length of query: 328 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 306 effective length of database: 17,147,199,772 effective search space: 5247043130232 effective search space used: 5247043130232 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
