ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart10f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC117482.4| Homo sapiens 3 BAC RP11-651J20 (Roswell Park Canc... 44 0.027
2emb|BX640462.6| Zebrafish DNA sequence from clone CH211-153D8 in... 44 0.027
3gb|AC010087.3| Homo sapiens BAC clone RP11-241M13 from 2, comple... 42 0.11
4gb|AC159635.2| Mus musculus BAC clone RP24-111I3 from chromosome... 40 0.42
5ref|NM_013464.2| Mus musculus aryl-hydrocarbon receptor (Ahr), mRNA 40 0.42
6dbj|AK153678.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 40 0.42
7dbj|AK155380.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 0.42
8dbj|AK171945.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 0.42
9dbj|AK172436.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 0.42
10gb|BC040248.1| Mus musculus aryl-hydrocarbon receptor, mRNA (cDN... 40 0.42
11dbj|AK014512.1| Mus musculus 0 day neonate skin cDNA, RIKEN full... 40 0.42
12gb|AF325111.1|AF325111 Mus musculus aryl-hydrocarbon receptor (A... 40 0.42
13dbj|D38417.1|MUSAHRB Mus musculus Ahr mRNA for arylhydrocarbon r... 40 0.42
14gb|L19756.1|MUSAHR11 Mouse DNA sequence, exon 11 40 0.42
15gb|M94623.1|MUSB1AHR Mouse (strain C571) Ah-receptor (Ah) mRNA i... 40 0.42
16gb|AC102290.7| Mus musculus chromosome 3, clone RP24-359J7, comp... 38 1.7
17gb|AC023174.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 38 1.7
18gb|AC122485.3| Mus musculus BAC clone RP24-377J10 from chromosom... 38 1.7
19gb|AC007364.3| Homo sapiens BAC clone RP11-329H24 from 2, comple... 38 1.7
20emb|AL590101.9| Human DNA sequence from clone RP11-318L16 on chr... 38 1.7
21emb|AL451146.7| Human DNA sequence from clone RP11-510K18 on chr... 38 1.7
22gb|AC158307.5| Mus musculus chromosome 3, clone RP23-148J20, com... 38 1.7
23emb|AL669823.7| Mouse DNA sequence from clone RP23-456O1 on chro... 38 1.7
24gb|AC079075.6| Homo sapiens chromosome 15, clone RP11-300G22, co... 38 1.7
25gb|AC013787.15| Homo sapiens chromosome 15, clone RP11-531E13, c... 38 1.7
26gb|AC182361.3| Spermophilus tridecemlineatus clone VMRC20-433G18... 38 1.7
27gb|AC010639.5| Homo sapiens chromosome 5 clone CTD-2358I2, compl... 38 1.7
28gb|AC112184.2| Homo sapiens chromosome 5 clone RP11-168A11, comp... 38 1.7
29gb|AC010595.7| Homo sapiens chromosome 5 clone CTC-480C2, comple... 38 1.7
30gb|AC133477.2| Homo sapiens 3 BAC RP11-364M20 (Roswell Park Canc... 38 1.7
31dbj|AP001782.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 38 1.7
32emb|AL080073.1|HSM800574 Homo sapiens mRNA; cDNA DKFZp564B1462 (... 38 1.7
33emb|AL928575.7| Mouse DNA sequence from clone RP23-37A11 on chro... 38 1.7
34gb|AC152948.1| Mus musculus 10 BAC RP23-89E2 (Roswell Park Cance... 36 6.6
35ref|XM_642721.1| Dictyostelium discoideum hypothetical protein (... 36 6.6
36gb|AE001418.1| Plasmodium falciparum 3D7 chromosome 2 section 55... 36 6.6
37gb|AC121149.12| Mus musculus chromosome 3, clone RP24-383A4, com... 36 6.6
38gb|AC116461.13| Mus musculus chromosome 10, clone RP23-463P8, co... 36 6.6
39gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 36 6.6
40emb|CR384074.11| Zebrafish DNA sequence from clone DKEY-229H19 i... 36 6.6
41emb|CR933791.16| Zebrafish DNA sequence from clone DKEYP-101F6 i... 36 6.6
42gb|AC125466.4| Mus musculus BAC clone RP23-477O24 from chromosom... 36 6.6
43gb|AC140222.3| Mus musculus BAC clone RP24-330A7 from chromosome... 36 6.6
44gb|AC126558.4| Mus musculus BAC clone RP23-300A11 from 19, compl... 36 6.6
45gb|AC116328.3| Mus musculus BAC clone RP24-131I17 from 15, compl... 36 6.6
46gb|AC098731.3| Mus musculus BAC clone RP23-3L10 from 9, complete... 36 6.6
47gb|AC034122.12| Mus musculus chromosome 1, clone RP23-169C19, co... 36 6.6
48gb|AC164427.5| Mus musculus BAC clone RP23-189P17 from chromosom... 36 6.6
49gb|AE014816.1| Plasmodium falciparum 3D7 chromosome 14 section 1... 36 6.6
50emb|AL356751.13| Human DNA sequence from clone RP11-717L20 on ch... 36 6.6
51emb|AL158050.8| Human DNA sequence from clone RP3-437C15 on chro... 36 6.6
52emb|AL157370.7| Human DNA sequence from clone RP11-289M23 on chr... 36 6.6
53emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g... 36 6.6
54emb|CR388063.9| Zebrafish DNA sequence from clone CH211-248P16 i... 36 6.6
55gb|AC026477.3| Homo sapiens chromosome 5 clone RP11-94D20, compl... 36 6.6
56gb|AC163292.2| Mus musculus BAC clone RP23-241P22 from chromosom... 36 6.6
57gb|AC113350.2| Homo sapiens chromosome 5 clone CTD-2548J21, comp... 36 6.6
58gb|AC041005.20| Homo sapiens chromosome 8, clone RP11-69M11, com... 36 6.6
59gb|AC009274.11| Homo sapiens chromosome 7 clone RP11-254L11, com... 36 6.6
60gb|AC073581.23| Homo sapiens 8 BAC RP11-429O2 (Roswell Park Canc... 36 6.6
61dbj|AK137209.1| Mus musculus adult male urinary bladder cDNA, RI... 36 6.6
62gb|AC164078.4| Mus musculus chromosome 3, clone RP23-123C15, com... 36 6.6
63gb|AC160980.5| Mus musculus BAC clone RP23-386F19 from chromosom... 36 6.6
64gb|AC027329.4| Homo sapiens chromosome 5 clone CTD-2143A15, comp... 36 6.6
65gb|AC010369.7| Homo sapiens chromosome 5 clone CTD-2048F20, comp... 36 6.6
66gb|AC026795.6| Homo sapiens chromosome 5 clone CTD-2287L22, comp... 36 6.6
67emb|BX649562.12| Zebrafish DNA sequence from clone CH211-244A23 ... 36 6.6
68gb|AF303741.1|AF303741 Chilo iridescent virus complete genome 36 6.6
69gb|AC026440.4|AC026440 Homo sapiens chromosome 5 clone CTD-2269F... 36 6.6
70gb|AC035144.3|AC035144 Homo sapiens chromosome 5 clone CTD-2220M... 36 6.6
71dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 36 6.6
72gb|AC114744.7| Homo sapiens BAC clone RP11-115L11 from 4, comple... 36 6.6
73gb|AC137074.2| Genomic sequence for Oryza sativa, Nipponbare str... 36 6.6
74gb|AC134232.2| Oryza sativa (japonica cultivar-group) chromosome... 36 6.6
75gb|AC138612.1| Homo sapiens BAC clone CTD-2293E22 from 2, comple... 36 6.6
76dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com... 36 6.6
77emb|BX004838.8| Zebrafish DNA sequence from clone DKEY-29N1 in l... 36 6.6
78dbj|AB019224.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 36 6.6
79emb|CR387997.18| Zebrafish DNA sequence from clone DKEY-13E3 in ... 36 6.6
80emb|BX005232.7| Zebrafish DNA sequence from clone CH211-172G24, ... 36 6.6
81emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA2... 36 6.6
82gb|AC117749.6| Mus musculus chromosome 1, clone RP24-319I19, com... 36 6.6
83emb|AL772379.11| Mouse DNA sequence from clone RP23-170D24 on ch... 36 6.6
84emb|AL954843.8| Zebrafish DNA sequence from clone DKEY-149K8 in ... 36 6.6
85gb|AC129329.3| Mus musculus BAC clone RP23-43M12 from 10, comple... 36 6.6
86emb|AJ938182.1| Staphylococcus aureus RF122 complete genome 36 6.6
87gb|AC116729.14| Mus musculus chromosome 3, clone RP23-346I1, com... 36 6.6 
>gb|AC117482.4| Homo sapiens 3 BAC RP11-651J20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 171333

 Score = 44.1 bits (22), Expect = 0.027
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 9     agttaaacataccatataacatattaaaaa 38
             ||||||| |||||||| |||||||||||||
Sbjct: 94677 agttaaaaataccataaaacatattaaaaa 94706
to top
>emb|BX640462.6| Zebrafish DNA sequence from clone CH211-153D8 in linkage group 24,
             complete sequence
          Length = 173882

 Score = 44.1 bits (22), Expect = 0.027
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 13    aaacataccatataacatattaaaaa 38
             ||||||||||| ||||||||||||||
Sbjct: 94256 aaacataccatgtaacatattaaaaa 94231
to top
>gb|AC010087.3| Homo sapiens BAC clone RP11-241M13 from 2, complete sequence
          Length = 202029

 Score = 42.1 bits (21), Expect = 0.11
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 7      aaagttaaacataccatataa 27
              |||||||||||||||||||||
Sbjct: 133820 aaagttaaacataccatataa 133840



 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 26     aacatattaaaaacagat 43
              ||||||||||||||||||
Sbjct: 118896 aacatattaaaaacagat 118879
to top
>gb|AC159635.2| Mus musculus BAC clone RP24-111I3 from chromosome 12, complete sequence
          Length = 168623

 Score = 40.1 bits (20), Expect = 0.42
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 22     atataacatattaaaaacagatcc 45
              ||||||||||| ||||||||||||
Sbjct: 102543 atataacatatgaaaaacagatcc 102520
to top
>ref|NM_013464.2| Mus musculus aryl-hydrocarbon receptor (Ahr), mRNA
          Length = 5363

 Score = 40.1 bits (20), Expect = 0.42
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 22   atataacatattaaaaacagatcc 45
            ||||||||||| ||||||||||||
Sbjct: 4335 atataacatatgaaaaacagatcc 4312
to top
>dbj|AK153678.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630042M20 product:aryl-hydrocarbon
            receptor, full insert sequence
          Length = 5495

 Score = 40.1 bits (20), Expect = 0.42
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 22   atataacatattaaaaacagatcc 45
            ||||||||||| ||||||||||||
Sbjct: 4423 atataacatatgaaaaacagatcc 4400
to top
>dbj|AK155380.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630223D07
            product:aryl-hydrocarbon receptor, full insert sequence
          Length = 5551

 Score = 40.1 bits (20), Expect = 0.42
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 22   atataacatattaaaaacagatcc 45
            ||||||||||| ||||||||||||
Sbjct: 4483 atataacatatgaaaaacagatcc 4460
to top
>dbj|AK171945.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830021C12 product:aryl-hydrocarbon
            receptor, full insert sequence
          Length = 3052

 Score = 40.1 bits (20), Expect = 0.42
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 22   atataacatattaaaaacagatcc 45
            ||||||||||| ||||||||||||
Sbjct: 1980 atataacatatgaaaaacagatcc 1957
to top
>dbj|AK172436.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830207G14 product:aryl-hydrocarbon
            receptor, full insert sequence
          Length = 3052

 Score = 40.1 bits (20), Expect = 0.42
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 22   atataacatattaaaaacagatcc 45
            ||||||||||| ||||||||||||
Sbjct: 1980 atataacatatgaaaaacagatcc 1957
to top
>gb|BC040248.1| Mus musculus aryl-hydrocarbon receptor, mRNA (cDNA clone
            IMAGE:2811933), with apparent retained intron
          Length = 2570

 Score = 40.1 bits (20), Expect = 0.42
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 22   atataacatattaaaaacagatcc 45
            ||||||||||| ||||||||||||
Sbjct: 1968 atataacatatgaaaaacagatcc 1945
to top
>dbj|AK014512.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched
           library, clone:4631405C13 product:aryl-hydrocarbon
           receptor, full insert sequence
          Length = 1278

 Score = 40.1 bits (20), Expect = 0.42
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 22  atataacatattaaaaacagatcc 45
           ||||||||||| ||||||||||||
Sbjct: 210 atataacatatgaaaaacagatcc 187
to top
>gb|AF325111.1|AF325111 Mus musculus aryl-hydrocarbon receptor (Ahr) gene, complete cds
          Length = 74146

 Score = 40.1 bits (20), Expect = 0.42
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 22    atataacatattaaaaacagatcc 45
             ||||||||||| ||||||||||||
Sbjct: 67227 atataacatatgaaaaacagatcc 67204
to top
>dbj|D38417.1|MUSAHRB Mus musculus Ahr mRNA for arylhydrocarbon receptor, complete cds
          Length = 6006

 Score = 40.1 bits (20), Expect = 0.42
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 22   atataacatattaaaaacagatcc 45
            ||||||||||| ||||||||||||
Sbjct: 4978 atataacatatgaaaaacagatcc 4955
to top
>gb|L19756.1|MUSAHR11 Mouse DNA sequence, exon 11
          Length = 3030

 Score = 40.1 bits (20), Expect = 0.42
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 22   atataacatattaaaaacagatcc 45
            ||||||||||| ||||||||||||
Sbjct: 1816 atataacatatgaaaaacagatcc 1793
to top
>gb|M94623.1|MUSB1AHR Mouse (strain C571) Ah-receptor (Ah) mRNA including  3'UTR region,
            complete cds
          Length = 5149

 Score = 40.1 bits (20), Expect = 0.42
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 22   atataacatattaaaaacagatcc 45
            ||||||||||| ||||||||||||
Sbjct: 4056 atataacatatgaaaaacagatcc 4033
to top
>gb|AC102290.7| Mus musculus chromosome 3, clone RP24-359J7, complete sequence
          Length = 175819

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 14     aacataccatataacatat 32
              |||||||||||||||||||
Sbjct: 121829 aacataccatataacatat 121847
to top
>gb|AC023174.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-25N12, complete
              sequence
          Length = 223266

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 19     accatataacatattaaaa 37
              |||||||||||||||||||
Sbjct: 150490 accatataacatattaaaa 150472
to top
>gb|AC122485.3| Mus musculus BAC clone RP24-377J10 from chromosome 3, complete sequence
          Length = 157739

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 11    ttaaacataccatataacatatt 33
             ||||| |||||||||||||||||
Sbjct: 96804 ttaaaaataccatataacatatt 96826
to top
>gb|AC007364.3| Homo sapiens BAC clone RP11-329H24 from 2, complete sequence
          Length = 200908

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 21    catataacatattaaaaac 39
             |||||||||||||||||||
Sbjct: 84325 catataacatattaaaaac 84343
to top
>emb|AL590101.9| Human DNA sequence from clone RP11-318L16 on chromosome 1 Contains the
             3' end of a novel gene (FLJ10876), the TRAF5 gene for TNF
             receptor-associated factor 5, a novel gene (MGC14801), a
             sorting nexin 25 (SNX25) pseudogene and a actin related
             protein 2/3 complex, subunit 3 21kDa (ARPC3) pseudogene,
             complete sequence
          Length = 180169

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     acactgaaagttaaacata 19
             |||||||||||||||||||
Sbjct: 25861 acactgaaagttaaacata 25843
to top
>emb|AL451146.7| Human DNA sequence from clone RP11-510K18 on chromosome 10 Contains a
              serine/threonine protein kinase pseudogene, complete
              sequence
          Length = 200891

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 6      gaaagttaaacataccata 24
              |||||||||||||||||||
Sbjct: 176775 gaaagttaaacataccata 176793
to top
>gb|AC158307.5| Mus musculus chromosome 3, clone RP23-148J20, complete sequence
          Length = 204891

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 14    aacataccatataacatat 32
             |||||||||||||||||||
Sbjct: 94877 aacataccatataacatat 94859
to top
>emb|AL669823.7| Mouse DNA sequence from clone RP23-456O1 on chromosome 11 Contains a
              novel gene and the 5' end of a novel gene, complete
              sequence
          Length = 197012

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 8      aagttaaacataccatataacat 30
              |||||||||||| ||||||||||
Sbjct: 186341 aagttaaacatagcatataacat 186319
to top
>gb|AC079075.6| Homo sapiens chromosome 15, clone RP11-300G22, complete sequence
          Length = 209955

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 7      aaagttaaacataccatat 25
              |||||||||||||||||||
Sbjct: 106961 aaagttaaacataccatat 106979
to top
>gb|AC013787.15| Homo sapiens chromosome 15, clone RP11-531E13, complete sequence
          Length = 176304

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 7      aaagttaaacataccatat 25
              |||||||||||||||||||
Sbjct: 170349 aaagttaaacataccatat 170331
to top
>gb|AC182361.3| Spermophilus tridecemlineatus clone VMRC20-433G18, complete sequence
          Length = 140138

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 19    accatataacatattaaaa 37
             |||||||||||||||||||
Sbjct: 32033 accatataacatattaaaa 32051
to top
>gb|AC010639.5| Homo sapiens chromosome 5 clone CTD-2358I2, complete sequence
          Length = 76171

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 14    aacataccatataacatattaaa 36
             |||||| ||||||||||||||||
Sbjct: 15981 aacatagcatataacatattaaa 15959
to top
>gb|AC112184.2| Homo sapiens chromosome 5 clone RP11-168A11, complete sequence
          Length = 173346

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 13    aaacataccatataacata 31
             |||||||||||||||||||
Sbjct: 63622 aaacataccatataacata 63604
to top
>gb|AC010595.7| Homo sapiens chromosome 5 clone CTC-480C2, complete sequence
          Length = 179484

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 14     aacataccatataacatattaaa 36
              |||||| ||||||||||||||||
Sbjct: 171798 aacatagcatataacatattaaa 171776
to top
>gb|AC133477.2| Homo sapiens 3 BAC RP11-364M20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 101061

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 7     aaagttaaacataccatat 25
             |||||||||||||||||||
Sbjct: 19902 aaagttaaacataccatat 19920
to top
>dbj|AP001782.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-109E10, complete
             sequence
          Length = 169313

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 7     aaagttaaacataccatat 25
             |||||||||||||||||||
Sbjct: 62896 aaagttaaacataccatat 62914
to top
>emb|AL080073.1|HSM800574 Homo sapiens mRNA; cDNA DKFZp564B1462 (from clone DKFZp564B1462)
          Length = 1913

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 1  acactgaaagttaaacata 19
          |||||||||||||||||||
Sbjct: 47 acactgaaagttaaacata 29
to top
>emb|AL928575.7| Mouse DNA sequence from clone RP23-37A11 on chromosome 2, complete
             sequence
          Length = 167375

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    aacatattaaaaacagatc 44
             |||||||||||||||||||
Sbjct: 43377 aacatattaaaaacagatc 43359
to top
>gb|AC152948.1| Mus musculus 10 BAC RP23-89E2 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 125479

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 18     taccatataacatattaaaaac 39
              ||||||||||||||||| ||||
Sbjct: 124727 taccatataacatattagaaac 124706
to top
>ref|XM_642721.1| Dictyostelium discoideum hypothetical protein (DDB0206275), partial
           mRNA
          Length = 642

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 18  taccatataacatattaa 35
           ||||||||||||||||||
Sbjct: 214 taccatataacatattaa 197
to top
>gb|AE001418.1| Plasmodium falciparum 3D7 chromosome 2 section 55 of 73 of the
            complete sequence
          Length = 12593

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 21   catataacatattaaaaa 38
            ||||||||||||||||||
Sbjct: 6619 catataacatattaaaaa 6602
to top
>gb|AC121149.12| Mus musculus chromosome 3, clone RP24-383A4, complete sequence
          Length = 172369

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 26    aacatattaaaaacagat 43
             ||||||||||||||||||
Sbjct: 83497 aacatattaaaaacagat 83514
to top
>gb|AC116461.13| Mus musculus chromosome 10, clone RP23-463P8, complete sequence
          Length = 203737

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 18     taccatataacatattaaaaac 39
              ||||||||||||||||| ||||
Sbjct: 182988 taccatataacatattagaaac 183009
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                         
Query: 13      aaacataccatataacatattaaaaa 38
               ||||| ||||| ||||||||||||||
Sbjct: 9864419 aaacacaccatttaacatattaaaaa 9864444
to top
>emb|CR384074.11| Zebrafish DNA sequence from clone DKEY-229H19 in linkage group 24,
             complete sequence
          Length = 138451

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 19    accatataacatattaaa 36
             ||||||||||||||||||
Sbjct: 98439 accatataacatattaaa 98422
to top
>emb|CR933791.16| Zebrafish DNA sequence from clone DKEYP-101F6 in linkage group 13,
             complete sequence
          Length = 176605

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 7     aaagttaaacataccatataac 28
             ||||| ||||||||||||||||
Sbjct: 52188 aaagtgaaacataccatataac 52167
to top
>gb|AC125466.4| Mus musculus BAC clone RP23-477O24 from chromosome 9, complete sequence
          Length = 150128

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 26     aacatattaaaaacagat 43
              ||||||||||||||||||
Sbjct: 148054 aacatattaaaaacagat 148037
to top
>gb|AC140222.3| Mus musculus BAC clone RP24-330A7 from chromosome 9, complete sequence
          Length = 145102

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 5     tgaaagttaaacatacca 22
             ||||||||||||||||||
Sbjct: 60222 tgaaagttaaacatacca 60205
to top
>gb|AC126558.4| Mus musculus BAC clone RP23-300A11 from 19, complete sequence
          Length = 159453

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 13   aaacataccatataacatatta 34
            ||||||| ||||||||||||||
Sbjct: 8410 aaacataacatataacatatta 8431
to top
>gb|AC116328.3| Mus musculus BAC clone RP24-131I17 from 15, complete sequence
          Length = 149291

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 1     acactgaaagttaaacat 18
             ||||||||||||||||||
Sbjct: 62337 acactgaaagttaaacat 62354
to top
>gb|AC098731.3| Mus musculus BAC clone RP23-3L10 from 9, complete sequence
          Length = 220184

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 26   aacatattaaaaacagat 43
            ||||||||||||||||||
Sbjct: 8590 aacatattaaaaacagat 8573
to top
>gb|AC034122.12| Mus musculus chromosome 1, clone RP23-169C19, complete sequence
          Length = 208469

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 21     catataacatattaaaaa 38
              ||||||||||||||||||
Sbjct: 183143 catataacatattaaaaa 183160
to top
>gb|AC164427.5| Mus musculus BAC clone RP23-189P17 from chromosome 19, complete
             sequence
          Length = 216510

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 13    aaacataccatataacatatta 34
             ||||||| ||||||||||||||
Sbjct: 76798 aaacataacatataacatatta 76819
to top
>gb|AE014816.1| Plasmodium falciparum 3D7 chromosome 14 section 1 of 13 of the complete
             sequence
          Length = 250029

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 21    catataacatattaaaaa 38
             ||||||||||||||||||
Sbjct: 20015 catataacatattaaaaa 19998
to top
>emb|AL356751.13| Human DNA sequence from clone RP11-717L20 on chromosome 13, complete
            sequence
          Length = 5970

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 7    aaagttaaacataccatataac 28
            ||||||||||||||||| ||||
Sbjct: 2935 aaagttaaacataccatttaac 2956
to top
>emb|AL158050.8| Human DNA sequence from clone RP3-437C15 on chromosome 6 Contains a
              Wilms' tumour 1-associating protein (WTAP) (KIAA0105)
              pseudogene, complete sequence
          Length = 149679

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 15     acataccatataacatat 32
              ||||||||||||||||||
Sbjct: 108963 acataccatataacatat 108980
to top
>emb|AL157370.7| Human DNA sequence from clone RP11-289M23 on chromosome 6, complete
             sequence
          Length = 34674

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 2     cactgaaagttaaacataccat 23
             ||||||||| ||||||||||||
Sbjct: 12705 cactgaaaggtaaacataccat 12726
to top
>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 21      catataacatattaaaaa 38
               ||||||||||||||||||
Sbjct: 1324890 catataacatattaaaaa 1324907
to top
>emb|CR388063.9| Zebrafish DNA sequence from clone CH211-248P16 in linkage group 18,
              complete sequence
          Length = 142119

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 21     catataacatattaaaaa 38
              ||||||||||||||||||
Sbjct: 100936 catataacatattaaaaa 100953
to top
>gb|AC026477.3| Homo sapiens chromosome 5 clone RP11-94D20, complete sequence
          Length = 70380

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 27    acatattaaaaacagatc 44
             ||||||||||||||||||
Sbjct: 20497 acatattaaaaacagatc 20514
to top
>gb|AC163292.2| Mus musculus BAC clone RP23-241P22 from chromosome 13, complete sequence
          Length = 208105

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 23     tataacatattaaaaaca 40
              ||||||||||||||||||
Sbjct: 169177 tataacatattaaaaaca 169160



 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 8      aagttaaacataccatat 25
              ||||||||||||||||||
Sbjct: 116357 aagttaaacataccatat 116374
to top
>gb|AC113350.2| Homo sapiens chromosome 5 clone CTD-2548J21, complete sequence
          Length = 80117

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 24    ataacatattaaaaacag 41
             ||||||||||||||||||
Sbjct: 12676 ataacatattaaaaacag 12659
to top
>gb|AC041005.20| Homo sapiens chromosome 8, clone RP11-69M11, complete sequence
          Length = 87471

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 14    aacataccatataacata 31
             ||||||||||||||||||
Sbjct: 13665 aacataccatataacata 13648
to top
>gb|AC009274.11| Homo sapiens chromosome 7 clone RP11-254L11, complete sequence
          Length = 150505

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 7     aaagttaaacataccata 24
             ||||||||||||||||||
Sbjct: 38294 aaagttaaacataccata 38311
to top
>gb|AC073581.23| Homo sapiens 8 BAC RP11-429O2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 176601

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 14     aacataccatataacata 31
              ||||||||||||||||||
Sbjct: 175365 aacataccatataacata 175348
to top
>dbj|AK137209.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
            enriched library, clone:9530047A02
            product:unclassifiable, full insert sequence
          Length = 4964

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 24   ataacatattaaaaacag 41
            ||||||||||||||||||
Sbjct: 3002 ataacatattaaaaacag 2985
to top
>gb|AC164078.4| Mus musculus chromosome 3, clone RP23-123C15, complete sequence
          Length = 188095

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 26    aacatattaaaaacagat 43
             ||||||||||||||||||
Sbjct: 81247 aacatattaaaaacagat 81230
to top
>gb|AC160980.5| Mus musculus BAC clone RP23-386F19 from chromosome 13, complete
             sequence
          Length = 184857

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 8     aagttaaacataccatat 25
             ||||||||||||||||||
Sbjct: 20171 aagttaaacataccatat 20154
to top
>gb|AC027329.4| Homo sapiens chromosome 5 clone CTD-2143A15, complete sequence
          Length = 128683

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 27     acatattaaaaacagatc 44
              ||||||||||||||||||
Sbjct: 119863 acatattaaaaacagatc 119880
to top
>gb|AC010369.7| Homo sapiens chromosome 5 clone CTD-2048F20, complete sequence
          Length = 160459

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 25/26 (96%), Gaps = 1/26 (3%)
 Strand = Plus / Minus

                                       
Query: 13    aaacataccatataacatattaaaaa 38
             |||||||||||| |||||||||||||
Sbjct: 43616 aaacataccata-aacatattaaaaa 43592
to top
>gb|AC026795.6| Homo sapiens chromosome 5 clone CTD-2287L22, complete sequence
          Length = 156277

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 22     atataacatattaaaaac 39
              ||||||||||||||||||
Sbjct: 135402 atataacatattaaaaac 135419
to top
>emb|BX649562.12| Zebrafish DNA sequence from clone CH211-244A23 in linkage group 18,
             complete sequence
          Length = 133163

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 22    atataacatattaaaaacagat 43
             ||||||||||||||| ||||||
Sbjct: 86894 atataacatattaaacacagat 86915
to top
>gb|AF303741.1|AF303741 Chilo iridescent virus complete genome
          Length = 212482

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 18    taccatataacatattaa 35
             ||||||||||||||||||
Sbjct: 52204 taccatataacatattaa 52187
to top
>gb|AC026440.4|AC026440 Homo sapiens chromosome 5 clone CTD-2269F5, complete sequence
          Length = 103115

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 19    accatataacatattaaa 36
             ||||||||||||||||||
Sbjct: 31154 accatataacatattaaa 31137
to top
>gb|AC035144.3|AC035144 Homo sapiens chromosome 5 clone CTD-2220M12, complete sequence
          Length = 112626

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 22    atataacatattaaaaac 39
             ||||||||||||||||||
Sbjct: 57880 atataacatattaaaaac 57863
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                         
Query: 13      aaacataccatataacatattaaaaa 38
               ||||| ||||| ||||||||||||||
Sbjct: 9862540 aaacacaccatttaacatattaaaaa 9862565
to top
>gb|AC114744.7| Homo sapiens BAC clone RP11-115L11 from 4, complete sequence
          Length = 115512

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 25    taacatattaaaaacaga 42
             ||||||||||||||||||
Sbjct: 13519 taacatattaaaaacaga 13536
to top
>gb|AC137074.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0022M22, from chromosome 3, complete sequence
          Length = 124166

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                       
Query: 13    aaacataccatataacatattaaaaa 38
             ||||| ||||| ||||||||||||||
Sbjct: 26808 aaacacaccatttaacatattaaaaa 26833
to top
>gb|AC134232.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0013D02, complete sequence
          Length = 131883

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                       
Query: 13    aaacataccatataacatattaaaaa 38
             ||||| ||||| ||||||||||||||
Sbjct: 10078 aaacacaccatttaacatattaaaaa 10053
to top
>gb|AC138612.1| Homo sapiens BAC clone CTD-2293E22 from 2, complete sequence
          Length = 158057

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 22     atataacatattaaaaac 39
              ||||||||||||||||||
Sbjct: 142636 atataacatattaaaaac 142653
to top
>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 21      catataacatattaaaaa 38
               ||||||||||||||||||
Sbjct: 1296395 catataacatattaaaaa 1296412
to top
>emb|BX004838.8| Zebrafish DNA sequence from clone DKEY-29N1 in linkage group 7, complete
              sequence
          Length = 226160

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 8      aagttaaacataccatat 25
              ||||||||||||||||||
Sbjct: 212340 aagttaaacataccatat 212323
to top
>dbj|AB019224.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K17O22
          Length = 67720

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 21    catataacatattaaaaa 38
             ||||||||||||||||||
Sbjct: 11013 catataacatattaaaaa 11030
to top
>emb|CR387997.18| Zebrafish DNA sequence from clone DKEY-13E3 in linkage group 4,
             complete sequence
          Length = 158108

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 11    ttaaacataccatataac 28
             ||||||||||||||||||
Sbjct: 99481 ttaaacataccatataac 99498
to top
>emb|BX005232.7| Zebrafish DNA sequence from clone CH211-172G24, complete sequence
          Length = 138158

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 26     aacatattaaaaacagat 43
              ||||||||||||||||||
Sbjct: 119040 aacatattaaaaacagat 119023
to top
>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 21      catataacatattaaaaa 38
               ||||||||||||||||||
Sbjct: 1338097 catataacatattaaaaa 1338114
to top
>gb|AC117749.6| Mus musculus chromosome 1, clone RP24-319I19, complete sequence
          Length = 174793

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 21     catataacatattaaaaa 38
              ||||||||||||||||||
Sbjct: 119378 catataacatattaaaaa 119395
to top
>emb|AL772379.11| Mouse DNA sequence from clone RP23-170D24 on chromosome 2, complete
             sequence
          Length = 99774

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 28    catattaaaaacagatcc 45
             ||||||||||||||||||
Sbjct: 16259 catattaaaaacagatcc 16242
to top
>emb|AL954843.8| Zebrafish DNA sequence from clone DKEY-149K8 in linkage group 15,
              complete sequence
          Length = 204599

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 17     ataccatataacatattaaaaa 38
              |||||||| |||||||||||||
Sbjct: 139689 ataccatacaacatattaaaaa 139668
to top
>gb|AC129329.3| Mus musculus BAC clone RP23-43M12 from 10, complete sequence
          Length = 176092

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 13    aaacataccatataacatatta 34
             ||||||| ||||||||||||||
Sbjct: 62933 aaacatatcatataacatatta 62954
to top
>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 21      catataacatattaaaaa 38
               ||||||||||||||||||
Sbjct: 1261531 catataacatattaaaaa 1261548
to top
>gb|AC116729.14| Mus musculus chromosome 3, clone RP23-346I1, complete sequence
          Length = 224088

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 24     ataacatattaaaaacag 41
              ||||||||||||||||||
Sbjct: 107139 ataacatattaaaaacag 107122


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 681,790
Number of Sequences: 3902068
Number of extensions: 681790
Number of successful extensions: 194577
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 193950
Number of HSP's gapped (non-prelim): 629
length of query: 50
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 30
effective length of database: 17,155,003,908
effective search space: 514650117240
effective search space used: 514650117240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
to top