ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart10f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2... 40 0.002
2EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4... 37 0.021
3EXPB5_ARATH (Q9M203) Putative beta-expansin 5 precursor (AtEXPB5... 37 0.021
4EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen... 35 0.11
5EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) ... 34 0.14
6EXPA7_ARATH (Q9LN94) Alpha-expansin 7 precursor (AtEXPA7) (At-EX... 32 0.68
7EXPA8_ARATH (O22874) Alpha-expansin 8 precursor (AtEXPA8) (At-EX... 31 1.5
8TYSY_BPT4 (P00471) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase) 30 2.6
9MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1 30 3.4
10EXPB3_ARATH (Q9M0I2) Beta-expansin 3 precursor (AtEXPB3) (At-EXP... 29 4.4
11EXP17_ARATH (Q9ZSI1) Putative alpha-expansin 17 precursor (AtEXP... 29 5.8
12EXPA9_ARATH (Q9LZ99) Alpha-expansin 9 precursor (AtEXPA9) (At-EX... 28 7.6
13EXP18_ARATH (Q9LQ07) Alpha-expansin 18 precursor (AtEXPA18) (At-... 28 9.9
14EXP15_ARATH (O80622) Alpha-expansin 15 precursor (AtEXPA15) (At-... 28 9.9
15ATKB_RALSO (Q8XU11) Potassium-transporting ATPase B chain (EC 3.... 28 9.9
16EXP14_ARATH (Q9FMA0) Putative alpha-expansin 14 precursor (AtEXP... 28 9.9

>EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2) (At-EXPB2)|
           (Ath-ExpBeta-1.4)
          Length = 273

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 16/28 (57%), Positives = 23/28 (82%)
 Frame = -1

Query: 438 DSGRKLVVNNVIPANWKAGATYRSLVNY 355
           +SG+ +V +NVIPANW+ GA Y+S VN+
Sbjct: 246 ESGKTVVASNVIPANWQPGAIYKSNVNF 273



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>EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4) (At-EXPB4)|
           (Ath-ExpBeta-1.1)
          Length = 259

 Score = 37.0 bits (84), Expect = 0.021
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = -1

Query: 438 DSGRKLVVNNVIPANWKAGATYRSLVNY 355
           +S + +V  NVIPANWK   +YRS+VN+
Sbjct: 232 ESHKVIVAYNVIPANWKPDESYRSIVNF 259



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>EXPB5_ARATH (Q9M203) Putative beta-expansin 5 precursor (AtEXPB5) (At-EXPB5)|
           (Ath-ExpBeta-1.3)
          Length = 264

 Score = 37.0 bits (84), Expect = 0.021
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 435 SGRKLVVNNVIPANWKAGATYRSLVNYP 352
           SG+K++   VIP  W  GA Y S VN+P
Sbjct: 231 SGKKIIAKGVIPEKWSPGAIYHSKVNFP 258



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>EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen Zea m 1) (Zea|
           m I)
          Length = 269

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -1

Query: 438 DSGRKLVVNNVIPANWKAGATYRSLVNY 355
           +SG+K++  +VIPANW+  A Y S V +
Sbjct: 241 ESGKKVIAKDVIPANWRPDAVYTSNVQF 268



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>EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) (Zea m I)|
           (Fragment)
          Length = 191

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -1

Query: 438 DSGRKLVVNNVIPANWKAGATYRSLVNY 355
           +SG+K++  ++IPANW+  A Y S V +
Sbjct: 163 ESGKKVIAKDIIPANWRPDAVYTSNVQF 190



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>EXPA7_ARATH (Q9LN94) Alpha-expansin 7 precursor (AtEXPA7) (At-EXP7) (AtEx7)|
           (Ath-ExpAlpha-1.26)
          Length = 262

 Score = 32.0 bits (71), Expect = 0.68
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 435 SGRKLVVNNVIPANWKAGATYRSLVNY 355
           +G  +   NV PANW  G TY+S  N+
Sbjct: 235 TGETIYAWNVAPANWSGGKTYKSTANF 261



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>EXPA8_ARATH (O22874) Alpha-expansin 8 precursor (AtEXPA8) (At-EXP8) (AtEx8)|
           (Ath-ExpAlpha-1.11)
          Length = 253

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -1

Query: 432 GRKLVVNNVIPANWKAGATYR 370
           GR LV N+V P+NW+ G TY+
Sbjct: 229 GRTLVSNDVAPSNWQFGQTYQ 249



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>TYSY_BPT4 (P00471) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase)|
          Length = 286

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 370 LPGELPLTLGHTHIYLLKMAPACEFLYREKKE 275
           +PG+L  + G+THIY+  +    E L RE KE
Sbjct: 205 IPGDLIFSGGNTHIYMNHVEQCKEILRREPKE 236



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>MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1|
          Length = 246

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 438 DSGRKLVVNNVIPANWKAGATYRSLVNY 355
           + G  LV ++VIPANWK    Y S + +
Sbjct: 217 EGGAHLVQDDVIPANWKPDTVYTSKLQF 244



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>EXPB3_ARATH (Q9M0I2) Beta-expansin 3 precursor (AtEXPB3) (At-EXPB3)|
           (Ath-ExpBeta-1.6)
          Length = 264

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 435 SGRKLVVNNVIPANWKAGATYRSLVNY 355
           +G+ L   +V+P NW   ATY S +N+
Sbjct: 234 AGKTLSATDVVPRNWAPKATYSSRLNF 260



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>EXP17_ARATH (Q9ZSI1) Putative alpha-expansin 17 precursor (AtEXPA17) (At-EXP17)|
           (AtEx17) (Ath-ExpAlpha-1.13)
          Length = 255

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -1

Query: 411 NVIPANWKAGATYRSLVNY 355
           NV+P+NW+ G +++S VN+
Sbjct: 237 NVVPSNWRFGQSFKSNVNF 255



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>EXPA9_ARATH (Q9LZ99) Alpha-expansin 9 precursor (AtEXPA9) (At-EXP9) (AtEx9)|
           (Ath-ExpAlpha-1.10)
          Length = 258

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 432 GRKLVVNNVIPANWKAGATY 373
           GR    NN+ P+NW+ G TY
Sbjct: 232 GRSSTSNNIAPSNWQFGQTY 251



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>EXP18_ARATH (Q9LQ07) Alpha-expansin 18 precursor (AtEXPA18) (At-EXP18) (AtEx18)|
           (Ath-ExpAlpha-1.25)
          Length = 257

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 411 NVIPANWKAGATYRSLVNY 355
           N  PA+W AG TY+S  N+
Sbjct: 238 NAAPASWSAGKTYQSKANF 256



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>EXP15_ARATH (O80622) Alpha-expansin 15 precursor (AtEXPA15) (At-EXP15) (AtEx15)|
           (Ath-ExpAlpha-1.3)
          Length = 248

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 432 GRKLVVNNVIPANWKAGATY 373
           GR +V NN+ PA+W  G T+
Sbjct: 223 GRTVVSNNIAPASWSFGQTF 242



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>ATKB_RALSO (Q8XU11) Potassium-transporting ATPase B chain (EC 3.6.3.12)|
           (Potassium-translocating ATPase B chain) (ATP
           phosphohydrolase [potassium-transporting] B chain)
           (Potassium-binding and translocating subunit B)
          Length = 744

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -2

Query: 371 APW*TTPDPGSHPYLSAQDGSCV*IFIPRKERMCV 267
           AP  TT  PG+HP LSA+D   + +F P   R  +
Sbjct: 30  APARTTTHPGAHPPLSAKDVRRLSMFAPALVRPAI 64



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>EXP14_ARATH (Q9FMA0) Putative alpha-expansin 14 precursor (AtEXPA14) (At-EXP14)|
           (AtEx14) (Ath-ExpAlpha-1.5)
          Length = 255

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 432 GRKLVVNNVIPANWKAGATY 373
           GR ++ NN  P NW  G TY
Sbjct: 227 GRTVISNNATPRNWSFGQTY 246


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,357,538
Number of Sequences: 219361
Number of extensions: 917368
Number of successful extensions: 2553
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2551
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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