Clone Name | rbart10f03 |
---|---|
Clone Library Name | barley_pub |
>EXPB2_ARATH (Q9SHY6) Putative beta-expansin 2 precursor (AtEXPB2) (At-EXPB2)| (Ath-ExpBeta-1.4) Length = 273 Score = 40.4 bits (93), Expect = 0.002 Identities = 16/28 (57%), Positives = 23/28 (82%) Frame = -1 Query: 438 DSGRKLVVNNVIPANWKAGATYRSLVNY 355 +SG+ +V +NVIPANW+ GA Y+S VN+ Sbjct: 246 ESGKTVVASNVIPANWQPGAIYKSNVNF 273
>EXPB4_ARATH (Q9SHD1) Putative beta-expansin 4 precursor (AtEXPB4) (At-EXPB4)| (Ath-ExpBeta-1.1) Length = 259 Score = 37.0 bits (84), Expect = 0.021 Identities = 15/28 (53%), Positives = 21/28 (75%) Frame = -1 Query: 438 DSGRKLVVNNVIPANWKAGATYRSLVNY 355 +S + +V NVIPANWK +YRS+VN+ Sbjct: 232 ESHKVIVAYNVIPANWKPDESYRSIVNF 259
>EXPB5_ARATH (Q9M203) Putative beta-expansin 5 precursor (AtEXPB5) (At-EXPB5)| (Ath-ExpBeta-1.3) Length = 264 Score = 37.0 bits (84), Expect = 0.021 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -1 Query: 435 SGRKLVVNNVIPANWKAGATYRSLVNYP 352 SG+K++ VIP W GA Y S VN+P Sbjct: 231 SGKKIIAKGVIPEKWSPGAIYHSKVNFP 258
>EXB1A_MAIZE (P58738) Beta-expansin 1a precursor (Pollen allergen Zea m 1) (Zea| m I) Length = 269 Score = 34.7 bits (78), Expect = 0.11 Identities = 13/28 (46%), Positives = 20/28 (71%) Frame = -1 Query: 438 DSGRKLVVNNVIPANWKAGATYRSLVNY 355 +SG+K++ +VIPANW+ A Y S V + Sbjct: 241 ESGKKVIAKDVIPANWRPDAVYTSNVQF 268
>EXB1B_MAIZE (Q07154) Beta-expansin 1b (Pollen allergen Zea m 1) (Zea m I)| (Fragment) Length = 191 Score = 34.3 bits (77), Expect = 0.14 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = -1 Query: 438 DSGRKLVVNNVIPANWKAGATYRSLVNY 355 +SG+K++ ++IPANW+ A Y S V + Sbjct: 163 ESGKKVIAKDIIPANWRPDAVYTSNVQF 190
>EXPA7_ARATH (Q9LN94) Alpha-expansin 7 precursor (AtEXPA7) (At-EXP7) (AtEx7)| (Ath-ExpAlpha-1.26) Length = 262 Score = 32.0 bits (71), Expect = 0.68 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -1 Query: 435 SGRKLVVNNVIPANWKAGATYRSLVNY 355 +G + NV PANW G TY+S N+ Sbjct: 235 TGETIYAWNVAPANWSGGKTYKSTANF 261
>EXPA8_ARATH (O22874) Alpha-expansin 8 precursor (AtEXPA8) (At-EXP8) (AtEx8)| (Ath-ExpAlpha-1.11) Length = 253 Score = 30.8 bits (68), Expect = 1.5 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = -1 Query: 432 GRKLVVNNVIPANWKAGATYR 370 GR LV N+V P+NW+ G TY+ Sbjct: 229 GRTLVSNDVAPSNWQFGQTYQ 249
>TYSY_BPT4 (P00471) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase)| Length = 286 Score = 30.0 bits (66), Expect = 2.6 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = -3 Query: 370 LPGELPLTLGHTHIYLLKMAPACEFLYREKKE 275 +PG+L + G+THIY+ + E L RE KE Sbjct: 205 IPGDLIFSGGNTHIYMNHVEQCKEILRREPKE 236
>MPAC1_CYNDA (O04701) Major pollen allergen Cyn d 1| Length = 246 Score = 29.6 bits (65), Expect = 3.4 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -1 Query: 438 DSGRKLVVNNVIPANWKAGATYRSLVNY 355 + G LV ++VIPANWK Y S + + Sbjct: 217 EGGAHLVQDDVIPANWKPDTVYTSKLQF 244
>EXPB3_ARATH (Q9M0I2) Beta-expansin 3 precursor (AtEXPB3) (At-EXPB3)| (Ath-ExpBeta-1.6) Length = 264 Score = 29.3 bits (64), Expect = 4.4 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = -1 Query: 435 SGRKLVVNNVIPANWKAGATYRSLVNY 355 +G+ L +V+P NW ATY S +N+ Sbjct: 234 AGKTLSATDVVPRNWAPKATYSSRLNF 260
>EXP17_ARATH (Q9ZSI1) Putative alpha-expansin 17 precursor (AtEXPA17) (At-EXP17)| (AtEx17) (Ath-ExpAlpha-1.13) Length = 255 Score = 28.9 bits (63), Expect = 5.8 Identities = 9/19 (47%), Positives = 16/19 (84%) Frame = -1 Query: 411 NVIPANWKAGATYRSLVNY 355 NV+P+NW+ G +++S VN+ Sbjct: 237 NVVPSNWRFGQSFKSNVNF 255
>EXPA9_ARATH (Q9LZ99) Alpha-expansin 9 precursor (AtEXPA9) (At-EXP9) (AtEx9)| (Ath-ExpAlpha-1.10) Length = 258 Score = 28.5 bits (62), Expect = 7.6 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -1 Query: 432 GRKLVVNNVIPANWKAGATY 373 GR NN+ P+NW+ G TY Sbjct: 232 GRSSTSNNIAPSNWQFGQTY 251
>EXP18_ARATH (Q9LQ07) Alpha-expansin 18 precursor (AtEXPA18) (At-EXP18) (AtEx18)| (Ath-ExpAlpha-1.25) Length = 257 Score = 28.1 bits (61), Expect = 9.9 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -1 Query: 411 NVIPANWKAGATYRSLVNY 355 N PA+W AG TY+S N+ Sbjct: 238 NAAPASWSAGKTYQSKANF 256
>EXP15_ARATH (O80622) Alpha-expansin 15 precursor (AtEXPA15) (At-EXP15) (AtEx15)| (Ath-ExpAlpha-1.3) Length = 248 Score = 28.1 bits (61), Expect = 9.9 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = -1 Query: 432 GRKLVVNNVIPANWKAGATY 373 GR +V NN+ PA+W G T+ Sbjct: 223 GRTVVSNNIAPASWSFGQTF 242
>ATKB_RALSO (Q8XU11) Potassium-transporting ATPase B chain (EC 3.6.3.12)| (Potassium-translocating ATPase B chain) (ATP phosphohydrolase [potassium-transporting] B chain) (Potassium-binding and translocating subunit B) Length = 744 Score = 28.1 bits (61), Expect = 9.9 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -2 Query: 371 APW*TTPDPGSHPYLSAQDGSCV*IFIPRKERMCV 267 AP TT PG+HP LSA+D + +F P R + Sbjct: 30 APARTTTHPGAHPPLSAKDVRRLSMFAPALVRPAI 64
>EXP14_ARATH (Q9FMA0) Putative alpha-expansin 14 precursor (AtEXPA14) (At-EXP14)| (AtEx14) (Ath-ExpAlpha-1.5) Length = 255 Score = 28.1 bits (61), Expect = 9.9 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -1 Query: 432 GRKLVVNNVIPANWKAGATY 373 GR ++ NN P NW G TY Sbjct: 227 GRTVISNNATPRNWSFGQTY 246 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,357,538 Number of Sequences: 219361 Number of extensions: 917368 Number of successful extensions: 2553 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2483 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2551 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)