ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart10f03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB158404.1| Triticum aestivum expB mRNA for putative beta-expansin, complete cds Length = 1247 Score = 226 bits (114), Expect = 5e-56 Identities = 127/130 (97%), Gaps = 1/130 (0%) Strand = Plus / Minus Query: 167 acacatgatacatcactaggggaatgcagagaccagggagggaacattacagttttgcaa 226 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1125 acacatgatacatcactaggggaatgcagagaccagggagggaacatcacagttttgcaa 1066 Query: 227 gctcctcctcctcatctgacaccgcctctcgcagcacccggacgcacattctttcttttc 286 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct: 1065 gctcctcctcctcatctgacgccgcc-ctcgcagcacccggacgcacattctttcttttc 1007 Query: 287 gcggtataaa 296 |||||||||| Sbjct: 1006 gcggtataaa 997 Score = 155 bits (78), Expect = 1e-34 Identities = 87/90 (96%) Strand = Plus / Minus Query: 349 tcaggggtagttcaccagggagcggtacgtggctccggccttccagttggcggggatgac 408 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 958 tcaggggtagttcaccagggagcggtacgtggccccggccttccagttggcggggatgac 899 Query: 409 gttgttgacgacgagcttcctgccggagtc 438 |||||||| ||| ||||||||||||||||| Sbjct: 898 gttgttgatgaccagcttcctgccggagtc 869 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/45 (91%), Gaps = 2/45 (4%) Strand = Plus / Minus Query: 58 tacatcgacatgcagc--tttagctgcagctcaatcgtctcctcg 100 |||||||||||||||| ||||||||||| ||| ||||||||||| Sbjct: 1228 tacatcgacatgcagcattttagctgcagttcagtcgtctcctcg 1184
>gb|AY543543.1| Triticum aestivum expansin EXPB9 mRNA, complete cds Length = 1060 Score = 176 bits (89), Expect = 4e-41 Identities = 101/105 (96%) Strand = Plus / Minus Query: 193 cagagaccagggagggaacattacagttttgcaagctcctcctcctcatctgacaccgcc 252 ||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||| Sbjct: 1060 cagagaccagggagggaacatcacagtttcgtaagctcctcctcctcatctgacaccgcc 1001 Query: 253 tctcgcagcacccggacgcacattctttcttttcgcggtataaaa 297 ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1000 tctcgtagcacccggacgcacattctttcttttcgcggtataaaa 956 Score = 163 bits (82), Expect = 6e-37 Identities = 88/90 (97%) Strand = Plus / Minus Query: 349 tcaggggtagttcaccagggagcggtacgtggctccggccttccagttggcggggatgac 408 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 922 tcaggggtagttcaccagggagcggtacgtggccccggccttccagttggcggggatgac 863 Query: 409 gttgttgacgacgagcttcctgccggagtc 438 |||| ||||||||||||||||||||||||| Sbjct: 862 gttgctgacgacgagcttcctgccggagtc 833
>ref|XM_467145.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1378 Score = 79.8 bits (40), Expect = 7e-12 Identities = 88/103 (85%), Gaps = 2/103 (1%) Strand = Plus / Minus Query: 176 acatcactaggggaatgcagagaccagggagggaacattacagttttgcaagctcct--c 233 ||||||||||||||||||||||||| |||||||| | || || | || ||||| | Sbjct: 1195 acatcactaggggaatgcagagaccgtggagggaagaacacgattcttaaacctcctttc 1136 Query: 234 ctcctcatctgacaccgcctctcgcagcacccggacgcacatt 276 |||||| ||||||||||||||||||| |||||||||||||||| Sbjct: 1135 ctcctcttctgacaccgcctctcgcaacacccggacgcacatt 1093 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Minus Query: 355 gtagttcaccagggagcggtacgtggctccggccttccagttggcggggatgacgttgtt 414 |||||||||||||||||||||||| | |||| ||||||| | || |||||||||||||| Sbjct: 978 gtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgttgtt 919 Query: 415 gacgacgagcttcctgccggagtc 438 |||||||| | |||||||||| Sbjct: 918 tgcgacgagcaccttgccggagtc 895
>gb|AF391103.1| Oryza sativa beta-expansin OsEXPB11 (EXPB11) gene, complete cds Length = 4024 Score = 79.8 bits (40), Expect = 7e-12 Identities = 88/103 (85%), Gaps = 2/103 (1%) Strand = Plus / Minus Query: 176 acatcactaggggaatgcagagaccagggagggaacattacagttttgcaagctcct--c 233 ||||||||||||||||||||||||| |||||||| | || || | || ||||| | Sbjct: 2803 acatcactaggggaatgcagagaccgtggagggaagaacacgattcttaaacctcctttc 2744 Query: 234 ctcctcatctgacaccgcctctcgcagcacccggacgcacatt 276 |||||| ||||||||||||||||||| |||||||||||||||| Sbjct: 2743 ctcctcttctgacaccgcctctcgcaacacccggacgcacatt 2701 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Minus Query: 355 gtagttcaccagggagcggtacgtggctccggccttccagttggcggggatgacgttgtt 414 |||||||||||||||||||||||| | |||| ||||||| | || |||||||||||||| Sbjct: 2586 gtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgttgtt 2527 Query: 415 gacgacgagcttcctgccggagtc 438 |||||||| | |||||||||| Sbjct: 2526 tgcgacgagcaccttgccggagtc 2503
>gb|AY046927.1| Oryza sativa beta-expansin (EXPB11) mRNA, partial cds Length = 508 Score = 79.8 bits (40), Expect = 7e-12 Identities = 88/103 (85%), Gaps = 2/103 (1%) Strand = Plus / Minus Query: 176 acatcactaggggaatgcagagaccagggagggaacattacagttttgcaagctcct--c 233 ||||||||||||||||||||||||| |||||||| | || || | || ||||| | Sbjct: 288 acatcactaggggaatgcagagaccgtggagggaagaacacgattcttaaacctcctttc 229 Query: 234 ctcctcatctgacaccgcctctcgcagcacccggacgcacatt 276 |||||| ||||||||||||||||||| |||||||||||||||| Sbjct: 228 ctcctcttctgacaccgcctctcgcaacacccggacgcacatt 186 Score = 67.9 bits (34), Expect = 3e-08 Identities = 61/70 (87%) Strand = Plus / Minus Query: 355 gtagttcaccagggagcggtacgtggctccggccttccagttggcggggatgacgttgtt 414 |||||||||||||||||||||||| | |||| ||||||| | || |||||||||||||| Sbjct: 71 gtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgttgtt 12 Query: 415 gacgacgagc 424 |||||||| Sbjct: 11 tgcgacgagc 2
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 79.8 bits (40), Expect = 7e-12 Identities = 88/103 (85%), Gaps = 2/103 (1%) Strand = Plus / Minus Query: 176 acatcactaggggaatgcagagaccagggagggaacattacagttttgcaagctcct--c 233 ||||||||||||||||||||||||| |||||||| | || || | || ||||| | Sbjct: 26668892 acatcactaggggaatgcagagaccgtggagggaagaacacgattcttaaacctcctttc 26668833 Query: 234 ctcctcatctgacaccgcctctcgcagcacccggacgcacatt 276 |||||| ||||||||||||||||||| |||||||||||||||| Sbjct: 26668832 ctcctcttctgacaccgcctctcgcaacacccggacgcacatt 26668790 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Minus Query: 355 gtagttcaccagggagcggtacgtggctccggccttccagttggcggggatgacgttgtt 414 |||||||||||||||||||||||| | |||| ||||||| | || |||||||||||||| Sbjct: 26668675 gtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgttgtt 26668616 Query: 415 gacgacgagcttcctgccggagtc 438 |||||||| | |||||||||| Sbjct: 26668615 tgcgacgagcaccttgccggagtc 26668592 Score = 48.1 bits (24), Expect = 0.024 Identities = 36/40 (90%) Strand = Plus / Minus Query: 397 ggcggggatgacgttgttgacgacgagcttcctgccggag 436 |||||||||||||||| || |||||||| ||| ||||||| Sbjct: 26658424 ggcggggatgacgttgctggcgacgagcgtccggccggag 26658385
>dbj|AP005072.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0708H12 Length = 162381 Score = 79.8 bits (40), Expect = 7e-12 Identities = 88/103 (85%), Gaps = 2/103 (1%) Strand = Plus / Minus Query: 176 acatcactaggggaatgcagagaccagggagggaacattacagttttgcaagctcct--c 233 ||||||||||||||||||||||||| |||||||| | || || | || ||||| | Sbjct: 30922 acatcactaggggaatgcagagaccgtggagggaagaacacgattcttaaacctcctttc 30863 Query: 234 ctcctcatctgacaccgcctctcgcagcacccggacgcacatt 276 |||||| ||||||||||||||||||| |||||||||||||||| Sbjct: 30862 ctcctcttctgacaccgcctctcgcaacacccggacgcacatt 30820 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Minus Query: 355 gtagttcaccagggagcggtacgtggctccggccttccagttggcggggatgacgttgtt 414 |||||||||||||||||||||||| | |||| ||||||| | || |||||||||||||| Sbjct: 30705 gtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgttgtt 30646 Query: 415 gacgacgagcttcctgccggagtc 438 |||||||| | |||||||||| Sbjct: 30645 tgcgacgagcaccttgccggagtc 30622 Score = 48.1 bits (24), Expect = 0.024 Identities = 36/40 (90%) Strand = Plus / Minus Query: 397 ggcggggatgacgttgttgacgacgagcttcctgccggag 436 |||||||||||||||| || |||||||| ||| ||||||| Sbjct: 20454 ggcggggatgacgttgctggcgacgagcgtccggccggag 20415
>dbj|AP005289.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_F09 Length = 139371 Score = 79.8 bits (40), Expect = 7e-12 Identities = 88/103 (85%), Gaps = 2/103 (1%) Strand = Plus / Minus Query: 176 acatcactaggggaatgcagagaccagggagggaacattacagttttgcaagctcct--c 233 ||||||||||||||||||||||||| |||||||| | || || | || ||||| | Sbjct: 103053 acatcactaggggaatgcagagaccgtggagggaagaacacgattcttaaacctcctttc 102994 Query: 234 ctcctcatctgacaccgcctctcgcagcacccggacgcacatt 276 |||||| ||||||||||||||||||| |||||||||||||||| Sbjct: 102993 ctcctcttctgacaccgcctctcgcaacacccggacgcacatt 102951 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Minus Query: 355 gtagttcaccagggagcggtacgtggctccggccttccagttggcggggatgacgttgtt 414 |||||||||||||||||||||||| | |||| ||||||| | || |||||||||||||| Sbjct: 102836 gtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgttgtt 102777 Query: 415 gacgacgagcttcctgccggagtc 438 |||||||| | |||||||||| Sbjct: 102776 tgcgacgagcaccttgccggagtc 102753 Score = 48.1 bits (24), Expect = 0.024 Identities = 36/40 (90%) Strand = Plus / Minus Query: 397 ggcggggatgacgttgttgacgacgagcttcctgccggag 436 |||||||||||||||| || |||||||| ||| ||||||| Sbjct: 92585 ggcggggatgacgttgctggcgacgagcgtccggccggag 92546
>dbj|AK059638.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-B01, full insert sequence Length = 1378 Score = 79.8 bits (40), Expect = 7e-12 Identities = 88/103 (85%), Gaps = 2/103 (1%) Strand = Plus / Minus Query: 176 acatcactaggggaatgcagagaccagggagggaacattacagttttgcaagctcct--c 233 ||||||||||||||||||||||||| |||||||| | || || | || ||||| | Sbjct: 1195 acatcactaggggaatgcagagaccgtggagggaagaacacgattcttaaacctcctttc 1136 Query: 234 ctcctcatctgacaccgcctctcgcagcacccggacgcacatt 276 |||||| ||||||||||||||||||| |||||||||||||||| Sbjct: 1135 ctcctcttctgacaccgcctctcgcaacacccggacgcacatt 1093 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Minus Query: 355 gtagttcaccagggagcggtacgtggctccggccttccagttggcggggatgacgttgtt 414 |||||||||||||||||||||||| | |||| ||||||| | || |||||||||||||| Sbjct: 978 gtagttcaccagggagcggtacgtcacgccgggcttccagctcgccgggatgacgttgtt 919 Query: 415 gacgacgagcttcctgccggagtc 438 |||||||| | |||||||||| Sbjct: 918 tgcgacgagcaccttgccggagtc 895
>gb|AY533104.1| Triticum aestivum beta-expansin 2 (EXPB2) gene, complete cds Length = 1216 Score = 63.9 bits (32), Expect = 4e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 384 cggccttccagttggcggggatgacgttgttgacgacgagcttcctgccgga 435 ||||||||||||||||||||||||||| ||| ||| ||||||| ||||||| Sbjct: 1024 cggccttccagttggcggggatgacgtccttggcgatgagcttcttgccgga 973
>gb|AY533103.1| Triticum aestivum beta-expansin 1 (EXPB1) gene, complete cds Length = 1149 Score = 63.9 bits (32), Expect = 4e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 384 cggccttccagttggcggggatgacgttgttgacgacgagcttcctgccgga 435 ||||||||||||||||||||||||||| ||| ||| ||||||| ||||||| Sbjct: 1103 cggccttccagttggcggggatgacgtccttggcgatgagcttcttgccgga 1052
>gb|AY533102.1| Triticum aestivum beta-expansin 2 (EXPB2) mRNA, complete cds Length = 1068 Score = 63.9 bits (32), Expect = 4e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 384 cggccttccagttggcggggatgacgttgttgacgacgagcttcctgccgga 435 ||||||||||||||||||||||||||| ||| ||| ||||||| ||||||| Sbjct: 789 cggccttccagttggcggggatgacgtccttggcgatgagcttcttgccgga 738
>gb|AY533101.1| Triticum aestivum beta-expansin 1 (EXPB1) mRNA, complete cds Length = 1111 Score = 63.9 bits (32), Expect = 4e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 384 cggccttccagttggcggggatgacgttgttgacgacgagcttcctgccgga 435 ||||||||||||||||||||||||||| ||| ||| ||||||| ||||||| Sbjct: 819 cggccttccagttggcggggatgacgtccttggcgatgagcttcttgccgga 768
>gb|AY533100.1| Triticum aestivum beta-expansin 1 (EXPB1) mRNA, partial cds Length = 496 Score = 63.9 bits (32), Expect = 4e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 384 cggccttccagttggcggggatgacgttgttgacgacgagcttcctgccgga 435 ||||||||||||||||||||||||||| ||| ||| ||||||| ||||||| Sbjct: 279 cggccttccagttggcggggatgacgtccttggcgatgagcttcttgccgga 228
>gb|AY543540.1| Triticum aestivum expansin EXPB5 mRNA, complete cds Length = 960 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 384 cggccttccagttggcggggatgacgttgttgacgacgagcttcctgccgg 434 ||||||||||||||||||||||||||| ||| ||| ||||||| |||||| Sbjct: 772 cggccttccagttggcggggatgacgtccttggcgatgagcttcttgccgg 722
>ref|NM_197701.1| Oryza sativa (japonica cultivar-group) beta-expansin EXPB4 (OSJNBa0010C11.2), mRNA Length = 1340 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 390 tccagttggcggggatgacgttgttgacgacgagcttcctgccgga 435 |||||||||| ||||||||||||||| |||||||| || ||||||| Sbjct: 927 tccagttggccgggatgacgttgttggcgacgagcgtcttgccgga 882
>gb|AF261272.1| Oryza sativa beta-expansin (EXPB4) mRNA, complete cds Length = 1249 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 390 tccagttggcggggatgacgttgttgacgacgagcttcctgccgga 435 |||||||||| ||||||||||||||| |||||||| || ||||||| Sbjct: 883 tccagttggccgggatgacgttgttggcgacgagcgtcttgccgga 838
>gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete sequence Length = 147117 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 390 tccagttggcggggatgacgttgttgacgacgagcttcctgccgga 435 |||||||||| ||||||||||||||| |||||||| || ||||||| Sbjct: 16729 tccagttggccgggatgacgttgttggcgacgagcgtcttgccgga 16684
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 390 tccagttggcggggatgacgttgttgacgacgagcttcctgccgga 435 |||||||||| ||||||||||||||| |||||||| || ||||||| Sbjct: 21341716 tccagttggccgggatgacgttgttggcgacgagcgtcttgccgga 21341671 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 391 ccagttggcggggatgacgttgttgacgacgagcttcctgccggagtc 438 |||||| || ||||||||||||||| |||||||| || |||||||||| Sbjct: 21311343 ccagttcgccgggatgacgttgttggcgacgagcgtcttgccggagtc 21311390
>dbj|AK105981.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-F12, full insert sequence Length = 1290 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 390 tccagttggcggggatgacgttgttgacgacgagcttcctgccgga 435 |||||||||| ||||||||||||||| |||||||| || ||||||| Sbjct: 940 tccagttggccgggatgacgttgttggcgacgagcgtcttgccgga 895
>dbj|AK103929.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D11, full insert sequence Length = 1266 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 390 tccagttggcggggatgacgttgttgacgacgagcttcctgccgga 435 |||||||||| ||||||||||||||| |||||||| || ||||||| Sbjct: 933 tccagttggccgggatgacgttgttggcgacgagcgtcttgccgga 888
>dbj|AK101806.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066K12, full insert sequence Length = 1883 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 390 tccagttggcggggatgacgttgttgacgacgagcttcctgccgga 435 |||||||||| ||||||||||||||| |||||||| || ||||||| Sbjct: 1517 tccagttggccgggatgacgttgttggcgacgagcgtcttgccgga 1472
>dbj|AK101357.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033035B15, full insert sequence Length = 1475 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 390 tccagttggcggggatgacgttgttgacgacgagcttcctgccgga 435 |||||||||| ||||||||||||||| |||||||| || ||||||| Sbjct: 1121 tccagttggccgggatgacgttgttggcgacgagcgtcttgccgga 1076
>dbj|AK060096.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-G02, full insert sequence Length = 1293 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 390 tccagttggcggggatgacgttgttgacgacgagcttcctgccgga 435 |||||||||| ||||||||||||||| |||||||| || ||||||| Sbjct: 939 tccagttggccgggatgacgttgttggcgacgagcgtcttgccgga 894
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 60.0 bits (30), Expect = 6e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 390 tccagttggcggggatgacgttgttgacgacgagcttcctgccgga 435 |||||||||| ||||||||||||||| |||||||| || ||||||| Sbjct: 21352979 tccagttggccgggatgacgttgttggcgacgagcgtcttgccgga 21352934 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 391 ccagttggcggggatgacgttgttgacgacgagcttcctgccggagtc 438 |||||| || ||||||||||||||| |||||||| || |||||||||| Sbjct: 21322607 ccagttcgccgggatgacgttgttggcgacgagcgtcttgccggagtc 21322654
>gb|BT017478.1| Zea mays clone EL01N0408G02.c mRNA sequence Length = 832 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 391 ccagttggcggggatgacgttgttgacgacgagcttcctgccgga 435 ||||||||| ||||||||||||||| |||||||| || ||||||| Sbjct: 263 ccagttggccgggatgacgttgttggcgacgagcgtcttgccgga 219
>gb|AF332181.1|AF332181 Zea mays beta-expansin 8 (expB8) mRNA, complete cds Length = 1479 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 391 ccagttggcggggatgacgttgttgacgacgagcttcctgccgga 435 ||||||||| ||||||||||||||| |||||||| || ||||||| Sbjct: 899 ccagttggccgggatgacgttgttggcgacgagcgtcttgccgga 855
>ref|NM_197698.1| Oryza sativa (japonica cultivar-group) beta-expansin EXPB6 (OSJNBb0014I11.3), mRNA Length = 1240 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 391 ccagttggcggggatgacgttgttgacgacgagcttcctgccggagtc 438 |||||| || ||||||||||||||| |||||||| || |||||||||| Sbjct: 882 ccagttcgccgggatgacgttgttggcgacgagcgtcttgccggagtc 835
>gb|AF261274.1| Oryza sativa beta-expansin (EXPB6) mRNA, complete cds Length = 1250 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 391 ccagttggcggggatgacgttgttgacgacgagcttcctgccggagtc 438 |||||| || ||||||||||||||| |||||||| || |||||||||| Sbjct: 875 ccagttcgccgggatgacgttgttggcgacgagcgtcttgccggagtc 828
>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence, complete sequence Length = 135510 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 391 ccagttggcggggatgacgttgttgacgacgagcttcctgccggagtc 438 |||||| || ||||||||||||||| |||||||| || |||||||||| Sbjct: 23016 ccagttcgccgggatgacgttgttggcgacgagcgtcttgccggagtc 22969
>dbj|AK105799.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-A09, full insert sequence Length = 1257 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 391 ccagttggcggggatgacgttgttgacgacgagcttcctgccggagtc 438 |||||| || ||||||||||||||| |||||||| || |||||||||| Sbjct: 895 ccagttcgccgggatgacgttgttggcgacgagcgtcttgccggagtc 848
>dbj|AK104197.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-A02, full insert sequence Length = 1257 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 391 ccagttggcggggatgacgttgttgacgacgagcttcctgccggagtc 438 |||||| || ||||||||||||||| |||||||| || |||||||||| Sbjct: 895 ccagttcgccgggatgacgttgttggcgacgagcgtcttgccggagtc 848
>dbj|AK101728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061F13, full insert sequence Length = 1263 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 391 ccagttggcggggatgacgttgttgacgacgagcttcctgccggagtc 438 |||||| || ||||||||||||||| |||||||| || |||||||||| Sbjct: 901 ccagttcgccgggatgacgttgttggcgacgagcgtcttgccggagtc 854
>dbj|AK061498.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-D06, full insert sequence Length = 1259 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 391 ccagttggcggggatgacgttgttgacgacgagcttcctgccggagtc 438 |||||| || ||||||||||||||| |||||||| || |||||||||| Sbjct: 895 ccagttcgccgggatgacgttgttggcgacgagcgtcttgccggagtc 848
>gb|BT019137.1| Zea mays clone Contig781.F mRNA sequence Length = 1044 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 391 ccagttggcggggatgacgttgttgacgacgagc 424 ||||||||| ||||||||||||||| |||||||| Sbjct: 524 ccagttggccgggatgacgttgttggcgacgagc 491
>dbj|AK064012.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-H01, full insert sequence Length = 1794 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 390 tccagttggcggggatgacgttgttgacgacgagcttcctgccgga 435 |||||| ||| ||||||||||||||| |||||||| || ||||||| Sbjct: 939 tccagtaggccgggatgacgttgttggcgacgagcgtcttgccgga 894
>ref|XM_467144.1| Oryza sativa (japonica cultivar-group), mRNA Length = 822 Score = 48.1 bits (24), Expect = 0.024 Identities = 36/40 (90%) Strand = Plus / Minus Query: 397 ggcggggatgacgttgttgacgacgagcttcctgccggag 436 |||||||||||||||| || |||||||| ||| ||||||| Sbjct: 765 ggcggggatgacgttgctggcgacgagcgtccggccggag 726
>gb|AF391107.1| Oryza sativa beta-expansin OsEXPB14 (EXPB14) gene, partial cds Length = 1348 Score = 46.1 bits (23), Expect = 0.095 Identities = 35/39 (89%) Strand = Plus / Minus Query: 397 ggcggggatgacgttgttgacgacgagcttcctgccgga 435 |||||||||||||||| || |||||||| ||| |||||| Sbjct: 425 ggcggggatgacgttgctggcgacgagcgtccggccgga 387
>emb|CR974458.2| Pig DNA sequence from clone CH242-29M17 on chromosome 17, complete sequence Length = 177939 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 186 gggaatgcagagaccagggagg 207 |||||||||||||||||||||| Sbjct: 24446 gggaatgcagagaccagggagg 24425
>gb|AF332177.1|AF332177 Zea mays beta-expansin 4 (expB4) mRNA, complete cds Length = 1273 Score = 44.1 bits (22), Expect = 0.38 Identities = 73/90 (81%) Strand = Plus / Minus Query: 349 tcaggggtagttcaccagggagcggtacgtggctccggccttccagttggcggggatgac 408 |||||||||||| |||| ||||||||| || |||| |||||| ||| |||||| | Sbjct: 1026 tcaggggtagttgaccaaggagcggtaggtcttgccgggcttccacgcggccgggatggc 967 Query: 409 gttgttgacgacgagcttcctgccggagtc 438 ||||||| |||||||| ||||| |||||| Sbjct: 966 gttgttggcgacgagcaccctgcgggagtc 937
>gb|AF332175.1|AF332175 Zea mays beta-expansin 2 (expB2) mRNA, partial cds Length = 907 Score = 44.1 bits (22), Expect = 0.38 Identities = 40/46 (86%) Strand = Plus / Minus Query: 390 tccagttggcggggatgacgttgttgacgacgagcttcctgccgga 435 |||||||||| ||||||||||| || |||||||| || ||||||| Sbjct: 487 tccagttggccgggatgacgttcctggcgacgagcgtcttgccgga 442
>ref|XM_473434.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 828 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 400 ggggatgacgttgttgacgacgagc 424 |||||||||||||||| |||||||| Sbjct: 774 ggggatgacgttgttggcgacgagc 750
>gb|AY669086.1| Toxoplasma gondii strain RH dihydrofolate/folylpolyglutamate synthase (dhfs/fpgs) mRNA, complete cds Length = 1875 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 269 cgcacattctttcttttcgcg 289 ||||||||||||||||||||| Sbjct: 430 cgcacattctttcttttcgcg 450
>gb|AY184492.2| Bacillus sp. RAPc8 amidase, nitrile hydratase beta subunit, nitrile hydratase alpha subunit, and nitrile hydratase activator P14k genes, complete cds Length = 2920 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 217 agttttgcaagctcctcctcc 237 ||||||||||||||||||||| Sbjct: 2476 agttttgcaagctcctcctcc 2456
>gb|AF261273.1| Oryza sativa beta-expansin (EXPB5) mRNA, complete cds Length = 1158 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 400 ggggatgacgttgttgacgacgagc 424 |||||||||||||||| |||||||| Sbjct: 813 ggggatgacgttgttggcgacgagc 789
>gb|AY039024.1| Oryza sativa beta-expansin 5 (EXPB5) gene, complete cds Length = 6000 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 400 ggggatgacgttgttgacgacgagc 424 |||||||||||||||| |||||||| Sbjct: 4456 ggggatgacgttgttggcgacgagc 4432
>gb|AC141002.8| Homo sapiens 3 BAC RP11-572O6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 138981 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 gcagagaccagggagggaaca 212 ||||||||||||||||||||| Sbjct: 63644 gcagagaccagggagggaaca 63664
>emb|AL606633.3|OSJN00060 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02, complete sequence Length = 173522 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 400 ggggatgacgttgttgacgacgagc 424 |||||||||||||||| |||||||| Sbjct: 60664 ggggatgacgttgttggcgacgagc 60640 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 401 gggatgacgttgttgacgacgagcttcctgccggag 436 |||||||||||| || |||||||| || |||||||| Sbjct: 51045 gggatgacgttgctggcgacgagcgtcttgccggag 51010
>emb|CR450818.8| Zebrafish DNA sequence from clone DKEY-172M14 in linkage group 5, complete sequence Length = 150883 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 137 attacagacggacgggcggacggac 161 ||||||||||||||| ||||||||| Sbjct: 124269 attacagacggacggacggacggac 124293
>gb|AF257489.1| Bacillus sp. BR449 strain BR499 nitrile hydratase alpha subunit gene, complete cds Length = 645 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 217 agttttgcaagctcctcctcc 237 ||||||||||||||||||||| Sbjct: 587 agttttgcaagctcctcctcc 567
>gb|DQ428284.1| Sorghum propinquum locus PRC0324 genomic sequence Length = 477 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 388 cttccagttggcggggatgacgttg 412 |||||||||||| |||||||||||| Sbjct: 277 cttccagttggccgggatgacgttg 253
>gb|DQ428283.1| Sorghum bicolor voucher PI585454 locus PRC0324 genomic sequence Length = 467 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 388 cttccagttggcggggatgacgttg 412 |||||||||||| |||||||||||| Sbjct: 277 cttccagttggccgggatgacgttg 253
>gb|DQ428282.1| Sorghum bicolor voucher PI267539 locus PRC0324 genomic sequence Length = 467 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 388 cttccagttggcggggatgacgttg 412 |||||||||||| |||||||||||| Sbjct: 277 cttccagttggccgggatgacgttg 253
>gb|DQ428281.1| Sorghum bicolor voucher PI267408 locus PRC0324 genomic sequence Length = 467 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 388 cttccagttggcggggatgacgttg 412 |||||||||||| |||||||||||| Sbjct: 277 cttccagttggccgggatgacgttg 253
>gb|DQ428280.1| Sorghum bicolor voucher PI221607 locus PRC0324 genomic sequence Length = 467 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 388 cttccagttggcggggatgacgttg 412 |||||||||||| |||||||||||| Sbjct: 277 cttccagttggccgggatgacgttg 253
>gb|DQ428279.1| Sorghum bicolor voucher PI152702 locus PRC0324 genomic sequence Length = 467 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 388 cttccagttggcggggatgacgttg 412 |||||||||||| |||||||||||| Sbjct: 277 cttccagttggccgggatgacgttg 253
>gb|DQ428278.1| Sorghum bicolor voucher NSL92371 locus PRC0324 genomic sequence Length = 467 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 388 cttccagttggcggggatgacgttg 412 |||||||||||| |||||||||||| Sbjct: 277 cttccagttggccgggatgacgttg 253
>gb|DQ428277.1| Sorghum bicolor voucher NSL87902 locus PRC0324 genomic sequence Length = 467 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 388 cttccagttggcggggatgacgttg 412 |||||||||||| |||||||||||| Sbjct: 277 cttccagttggccgggatgacgttg 253
>gb|DQ428276.1| Sorghum bicolor voucher NSL87666 locus PRC0324 genomic sequence Length = 467 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 388 cttccagttggcggggatgacgttg 412 |||||||||||| |||||||||||| Sbjct: 277 cttccagttggccgggatgacgttg 253
>gb|DQ428275.1| Sorghum bicolor voucher NSL77217 locus PRC0324 genomic sequence Length = 467 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 388 cttccagttggcggggatgacgttg 412 |||||||||||| |||||||||||| Sbjct: 277 cttccagttggccgggatgacgttg 253
>gb|DQ428274.1| Sorghum bicolor voucher NSL77034 locus PRC0324 genomic sequence Length = 467 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 388 cttccagttggcggggatgacgttg 412 |||||||||||| |||||||||||| Sbjct: 277 cttccagttggccgggatgacgttg 253
>gb|DQ428273.1| Sorghum bicolor voucher NSL56174 locus PRC0324 genomic sequence Length = 467 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 388 cttccagttggcggggatgacgttg 412 |||||||||||| |||||||||||| Sbjct: 277 cttccagttggccgggatgacgttg 253
>gb|DQ428272.1| Sorghum bicolor voucher NSL56003 locus PRC0324 genomic sequence Length = 467 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 388 cttccagttggcggggatgacgttg 412 |||||||||||| |||||||||||| Sbjct: 277 cttccagttggccgggatgacgttg 253
>gb|DQ428271.1| Sorghum bicolor voucher NSL55243 locus PRC0324 genomic sequence Length = 467 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 388 cttccagttggcggggatgacgttg 412 |||||||||||| |||||||||||| Sbjct: 277 cttccagttggccgggatgacgttg 253
>gb|DQ428270.1| Sorghum bicolor voucher NSL51365 locus PRC0324 genomic sequence Length = 467 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 388 cttccagttggcggggatgacgttg 412 |||||||||||| |||||||||||| Sbjct: 277 cttccagttggccgggatgacgttg 253
>gb|DQ428269.1| Sorghum bicolor voucher NSL51030 locus PRC0324 genomic sequence Length = 467 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 388 cttccagttggcggggatgacgttg 412 |||||||||||| |||||||||||| Sbjct: 277 cttccagttggccgggatgacgttg 253
>gb|DQ428268.1| Sorghum bicolor voucher NSL50875 locus PRC0324 genomic sequence Length = 467 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 388 cttccagttggcggggatgacgttg 412 |||||||||||| |||||||||||| Sbjct: 277 cttccagttggccgggatgacgttg 253
>gb|DQ428267.1| Sorghum bicolor voucher BTx623 locus PRC0324 genomic sequence Length = 467 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 388 cttccagttggcggggatgacgttg 412 |||||||||||| |||||||||||| Sbjct: 277 cttccagttggccgggatgacgttg 253
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 400 ggggatgacgttgttgacgacgagc 424 |||||||||||||||| |||||||| Sbjct: 27630035 ggggatgacgttgttggcgacgagc 27630011 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 401 gggatgacgttgttgacgacgagcttcctgccggag 436 |||||||||||| || |||||||| || |||||||| Sbjct: 27620416 gggatgacgttgctggcgacgagcgtcttgccggag 27620381
>gb|AY112289.1| Zea mays CL45799_1 mRNA sequence Length = 678 Score = 42.1 bits (21), Expect = 1.5 Identities = 57/69 (82%) Strand = Plus / Plus Query: 368 gagcggtacgtggctccggccttccagttggcggggatgacgttgttgacgacgagcttc 427 |||||||||||||| |||| | |||| ||||||||||||| | || |||||| | || Sbjct: 270 gagcggtacgtggcgccgggcgtccaccccgcggggatgacgtcgctggcgacgaccgtc 329 Query: 428 ctgccggag 436 ||||||||| Sbjct: 330 ctgccggag 338
>emb|AL513354.14| Mouse DNA sequence from clone RP23-150J22 on chromosome 15, complete sequence Length = 227073 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 gtgtgacccagggtcaggggt 356 ||||||||||||||||||||| Sbjct: 186468 gtgtgacccagggtcaggggt 186488
>gb|AC152978.1| Mus musculus BAC RP23-111A15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 180393 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 attcacacgcaggagccatcttga 321 ||||| |||||||||||||||||| Sbjct: 1387 attcagacgcaggagccatcttga 1364
>ref|XM_473433.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 795 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 401 gggatgacgttgttgacgacgagcttcctgccggag 436 |||||||||||| || |||||||| || |||||||| Sbjct: 746 gggatgacgttgctggcgacgagcgtcttgccggag 711
>gb|AC119290.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0037H06, complete sequence Length = 144457 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 401 gggatgacgttgttgacgacgagcttcctgccggag 436 |||||||||||| || |||||||| || |||||||| Sbjct: 102845 gggatgacgttgctggcgacgagcgtcttgccggag 102880
>gb|BT019004.1| Zea mays clone Contig494.F mRNA sequence Length = 1412 Score = 40.1 bits (20), Expect = 5.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 397 ggcggggatgacgttgttgacgacgagcttcctgccggag 436 |||||||||||||||| || ||||||| |||||||||| Sbjct: 828 ggcggggatgacgttgctggcgacgaggaccctgccggag 789
>gb|AC160990.4| Mus musculus BAC clone RP23-172K2 from chromosome 12, complete sequence Length = 213387 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 atgcagagaccagggaggga 209 |||||||||||||||||||| Sbjct: 22437 atgcagagaccagggaggga 22418
>ref|NM_007462.1| Mus musculus adenomatosis polyposis coli (Apc), mRNA Length = 8565 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 gacaacaaagcagaggaagg 119 |||||||||||||||||||| Sbjct: 5137 gacaacaaagcagaggaagg 5156
>gb|AF391108.1| Oryza sativa beta-expansin OsEXPB15 (EXPB15) gene, complete cds Length = 4080 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 401 gggatgacgttgttgacgacgagcttcctgccggag 436 |||||||||||| || |||||||| || |||||||| Sbjct: 3142 gggatgacgttgctggcgacgagcgtcttgccggag 3107
>gb|AC125010.6| Mus musculus chromosome 10, clone RP24-117L12, complete sequence Length = 223541 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 298 attcacacgcaggagccatcttga 321 ||||| |||||||||||||||||| Sbjct: 55218 attcagacgcaggagccatcttga 55241
>ref|XM_622559.3| PREDICTED: Mus musculus adenomatosis polyposis coli (Apc), mRNA Length = 11620 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 gacaacaaagcagaggaagg 119 |||||||||||||||||||| Sbjct: 4513 gacaacaaagcagaggaagg 4532
>gb|AC147341.2| Pan troglodytes BAC clone CH251-31E16 from Y, complete sequence Length = 193163 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 atgcagctttagctgcagct 86 |||||||||||||||||||| Sbjct: 95351 atgcagctttagctgcagct 95370
>gb|AC151275.3| Mus musculus BAC clone RP24-201F8 from chromosome 17, complete sequence Length = 190772 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 atgcagagaccagggaggga 209 |||||||||||||||||||| Sbjct: 187685 atgcagagaccagggaggga 187704
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 cgggcggacggactacatac 168 |||||||||||||||||||| Sbjct: 2508224 cgggcggacggactacatac 2508205
>emb|AL592495.1| Zebrafish DNA sequence from clone BUSM1-129I22 in linkage group 22 Contains a novel gene similar to human and rodent IER5 (immediately early response 5), the scl gene for stem-cell leukemia hematopoietic transcription factor [tal-1 / T-cell acute lymphocytic leukemia 1 (TAL1); T-cell acute lymphocytic leukemia 1 (Tal1)], a novel gene, a novel gene for a protein similar to human PDZ domain proteins, ESTs, STSs, GSSs and two CpG islands.ESTs, STSs, GSSs and two CpG islands, complete sequence Length = 84543 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 138 ttacagacggacgggcggacggac 161 |||||||||||||| ||||||||| Sbjct: 23248 ttacagacggacggacggacggac 23271
>gb|AC129555.29| Mus musculus chromosome 5, clone RP24-90F19, complete sequence Length = 242141 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 ggtgtgacccagggtcaggg 354 |||||||||||||||||||| Sbjct: 71325 ggtgtgacccagggtcaggg 71306
>dbj|BS000534.1| Pan troglodytes chromosome Y clone:PTB-092H12, complete sequences Length = 224014 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 atgcagctttagctgcagct 86 |||||||||||||||||||| Sbjct: 18579 atgcagctttagctgcagct 18598
>dbj|BS000532.1| Pan troglodytes chromosome Y clone:PTB-056N15, complete sequences Length = 144899 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 atgcagctttagctgcagct 86 |||||||||||||||||||| Sbjct: 81556 atgcagctttagctgcagct 81575
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 atgcagctttagctgcagct 86 |||||||||||||||||||| Sbjct: 22950272 atgcagctttagctgcagct 22950253
>gb|DQ421828.1| Zea mays clone 1.8 Zea m 1 allergen mRNA, partial cds Length = 1019 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 385 ggccttccagttggcggggatgac 408 ||||||||||||||| |||||||| Sbjct: 736 ggccttccagttggcagggatgac 713
>gb|DQ421827.1| Zea mays clone 1.6 Zea m 1 allergen mRNA, complete cds Length = 1104 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 385 ggccttccagttggcggggatgac 408 ||||||||||||||| |||||||| Sbjct: 800 ggccttccagttggcagggatgac 777
>gb|AC102341.10| Mus musculus chromosome 8, clone RP23-214E1, complete sequence Length = 187701 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 atgcagagaccagggaggga 209 |||||||||||||||||||| Sbjct: 78726 atgcagagaccagggaggga 78707
>gb|AC108064.3| Homo sapiens BAC clone RP11-485C11 from 4, complete sequence Length = 104623 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 atgcagctttagctgcagct 86 |||||||||||||||||||| Sbjct: 81502 atgcagctttagctgcagct 81483
>gb|AC020807.2| Mus musculus chromosome 18 clone RG-MBAC_225G20, complete sequence Length = 81195 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gacaacaaagcagaggaagg 119 |||||||||||||||||||| Sbjct: 51749 gacaacaaagcagaggaagg 51730
>gb|AF315553.1|AF315553 Homo sapiens PRKY gene, partial sequence, in clone Y813, complete sequence Length = 197321 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 atgcagctttagctgcagct 86 |||||||||||||||||||| Sbjct: 134339 atgcagctttagctgcagct 134320
>dbj|AK164902.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030011I01 product:ATP-binding cassette, sub-family C (CFTR/MRP), member 10, full insert sequence Length = 2285 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 atgcagagaccagggaggga 209 |||||||||||||||||||| Sbjct: 1954 atgcagagaccagggaggga 1973
>emb|BX323053.6| Zebrafish DNA sequence from clone DKEYP-53E9 in linkage group 12, complete sequence Length = 92153 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 139 tacagacggacgggcggacggact 162 ||||||||||||| |||||||||| Sbjct: 68887 tacagacggacggacggacggact 68864
>dbj|AK054433.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN full-length enriched library, clone:E330025A09 product:Warning: possibly chimeric clone, full insert sequence Length = 3478 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 gacaacaaagcagaggaagg 119 |||||||||||||||||||| Sbjct: 2475 gacaacaaagcagaggaagg 2494
>gb|AC091750.1|AC091750 Mus musculus chromosome 18 clone unknown, complete sequence Length = 81195 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gacaacaaagcagaggaagg 119 |||||||||||||||||||| Sbjct: 51749 gacaacaaagcagaggaagg 51730
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 401 gggatgacgttgttgacgacgagcttcctgccggag 436 |||||||||||| || |||||||| || |||||||| Sbjct: 8770403 gggatgacgttgctggcgacgagcgtcttgccggag 8770438
>gb|AF043639.1|AF043639 Drosophila guanche clone 6A-K/L repetitive DNA Length = 764 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 agacggacgggcggacggac 161 |||||||||||||||||||| Sbjct: 197 agacggacgggcggacggac 178
>gb|AC010104.3|AC010104 Homo sapiens BAC clone RP11-540C18 from Y, complete sequence Length = 110250 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 atgcagctttagctgcagct 86 |||||||||||||||||||| Sbjct: 56189 atgcagctttagctgcagct 56208
>gb|AC138124.2| Homo sapiens 3 BAC RP11-191P21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 67971 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 gacaacaaagcagaggaagg 119 |||||||||||||||||||| Sbjct: 22784 gacaacaaagcagaggaagg 22803
>ref|XM_345106.1| PREDICTED: Rattus norvegicus trypsin domain containing 1 (predicted) (Tysnd1_predicted), mRNA Length = 1704 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 ctcctcctcctcatctgacaccgc 251 |||||||||||| ||||||||||| Sbjct: 534 ctcctcctcctcctctgacaccgc 511
>gb|DQ074474.1| Malus x domestica MYB92 mRNA, complete cds Length = 1748 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 ggatgacgttgttgacgacg 421 |||||||||||||||||||| Sbjct: 1135 ggatgacgttgttgacgacg 1116
>dbj|BS000134.1| Pan troglodytes chromosome 22 clone:PTB-292C11, map 22, complete sequences Length = 139978 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 tgcagagaccagggagggaa 210 |||||||||||||||||||| Sbjct: 94966 tgcagagaccagggagggaa 94985
>dbj|BS000228.1| Pan troglodytes chromosome 22 clone:RP43-139F08, map 22, complete sequences Length = 160535 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 tgcagagaccagggagggaa 210 |||||||||||||||||||| Sbjct: 863 tgcagagaccagggagggaa 882
>dbj|AK101313.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034A12, full insert sequence Length = 1250 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 401 gggatgacgttgttgacgacgagcttcctgccggag 436 |||||||||||| || |||||||| || |||||||| Sbjct: 845 gggatgacgttgctggcgacgagcgtcttgccggag 810
>emb|BX664601.6| Zebrafish DNA sequence from clone CH211-135J1 in linkage group 22, complete sequence Length = 76145 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 138 ttacagacggacgggcggacggac 161 |||||||||||||| ||||||||| Sbjct: 55708 ttacagacggacggacggacggac 55731
>gb|AY105319.1| Zea mays PCO119167 mRNA sequence Length = 1134 Score = 40.1 bits (20), Expect = 5.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 397 ggcggggatgacgttgttgacgacgagcttcctgccggag 436 |||||||||||||||| || ||||||| |||||||||| Sbjct: 860 ggcggggatgacgttgctggcgacgagaaccctgccggag 821
>gb|AY104125.1| Zea mays PCO068046 mRNA sequence Length = 1191 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 385 ggccttccagttggcggggatgac 408 ||||||||||||||| |||||||| Sbjct: 808 ggccttccagttggcagggatgac 785
>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region locus, strain C57BL/6 Length = 2500000 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 atgcagagaccagggaggga 209 |||||||||||||||||||| Sbjct: 43781 atgcagagaccagggaggga 43762
>dbj|AP001746.1| Homo sapiens genomic DNA, chromosome 21q, section 90/105 Length = 340000 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 tgcagagaccagggagggaa 210 |||||||||||||||||||| Sbjct: 230895 tgcagagaccagggagggaa 230914
>emb|CR556714.4| Zebrafish DNA sequence from clone DKEY-29P13 in linkage group 11, complete sequence Length = 124598 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 gacggacgggcggacggact 162 |||||||||||||||||||| Sbjct: 52921 gacggacgggcggacggact 52902
>gb|AC127682.4| Mus musculus BAC clone RP24-170O17 from 8, complete sequence Length = 144298 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 atgcagagaccagggaggga 209 |||||||||||||||||||| Sbjct: 76460 atgcagagaccagggaggga 76479
>gb|AC151909.5| Mus musculus BAC clone RP23-60H14 from chromosome 8, complete sequence Length = 208855 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 atgcagagaccagggaggga 209 |||||||||||||||||||| Sbjct: 16910 atgcagagaccagggaggga 16891
>gb|M88127.1|MUSAPCA Mouse APC mRNA, complete cds Length = 8565 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 gacaacaaagcagaggaagg 119 |||||||||||||||||||| Sbjct: 5137 gacaacaaagcagaggaagg 5156
>emb|CT030152.4| Mouse DNA sequence from clone RP24-323G18 on chromosome 13, complete sequence Length = 129293 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 acaacaaagcagaggaaggc 120 |||||||||||||||||||| Sbjct: 49587 acaacaaagcagaggaaggc 49568
>emb|AL844896.7| Mouse DNA sequence from clone RP23-356L21 on chromosome 2, complete sequence Length = 83203 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 aatgcagagaccagggaggg 208 |||||||||||||||||||| Sbjct: 66725 aatgcagagaccagggaggg 66744
>emb|AL591373.8| Mouse DNA sequence from clone RP23-268M6 on chromosome 18, complete sequence Length = 174264 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gacaacaaagcagaggaagg 119 |||||||||||||||||||| Sbjct: 1366 gacaacaaagcagaggaagg 1347
>gb|AC090534.10| Mus musculus Strain C57BL6/J chromosome 18 BAC, RP23-233F17, complete sequence Length = 176773 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gacaacaaagcagaggaagg 119 |||||||||||||||||||| Sbjct: 123982 gacaacaaagcagaggaagg 123963
>dbj|AP001623.1| Homo sapiens genomic DNA, chromosome 21, clone:KB169B4, MX1-D21S171 region, complete sequence Length = 157739 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 tgcagagaccagggagggaa 210 |||||||||||||||||||| Sbjct: 127411 tgcagagaccagggagggaa 127430 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,668,517 Number of Sequences: 3902068 Number of extensions: 4668517 Number of successful extensions: 92413 Number of sequences better than 10.0: 121 Number of HSP's better than 10.0 without gapping: 119 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 92040 Number of HSP's gapped (non-prelim): 373 length of query: 438 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 416 effective length of database: 17,147,199,772 effective search space: 7133235105152 effective search space used: 7133235105152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
