ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart10f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HLGC_STAAW (Q7A019) Gamma-hemolysin component C precursor 31 1.1
2HLGC_STAAU (Q07227) Gamma-hemolysin component C precursor (H-gam... 31 1.1
3HLGC_STAAS (Q6G6Q1) Gamma-hemolysin component C precursor 31 1.1
4HLGC_STAAR (Q6GE13) Gamma-hemolysin component C precursor 31 1.1
5HLGC_STAAN (Q7A3S2) Gamma-hemolysin component C precursor 31 1.1
6HLGC_STAAM (Q99RL1) Gamma-hemolysin component C precursor 31 1.1
7HLGC_STAAC (Q5HDD4) Gamma-hemolysin component C precursor 31 1.1
8LUKS_STAAU (P31716) Leukocidin S subunit precursor 30 2.5

>HLGC_STAAW (Q7A019) Gamma-hemolysin component C precursor|
          Length = 315

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 4   TKSKITNKCGITNHLQKRYLLKRKYHKDTL 93
           T+ K +NK G+T ++Q  ++  +KY+KD L
Sbjct: 48  TEDKTSNKWGVTQNIQFDFVKDKKYNKDAL 77



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>HLGC_STAAU (Q07227) Gamma-hemolysin component C precursor (H-gamma-1)|
           (H-gamma-I)
          Length = 315

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 4   TKSKITNKCGITNHLQKRYLLKRKYHKDTL 93
           T+ K +NK G+T ++Q  ++  +KY+KD L
Sbjct: 48  TEDKTSNKWGVTQNIQFDFVKDKKYNKDAL 77



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>HLGC_STAAS (Q6G6Q1) Gamma-hemolysin component C precursor|
          Length = 315

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 4   TKSKITNKCGITNHLQKRYLLKRKYHKDTL 93
           T+ K +NK G+T ++Q  ++  +KY+KD L
Sbjct: 48  TEDKTSNKWGVTQNIQFDFVKDKKYNKDAL 77



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>HLGC_STAAR (Q6GE13) Gamma-hemolysin component C precursor|
          Length = 315

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 4   TKSKITNKCGITNHLQKRYLLKRKYHKDTL 93
           T+ K +NK G+T ++Q  ++  +KY+KD L
Sbjct: 48  TEDKTSNKWGVTQNIQFDFVKDKKYNKDAL 77



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>HLGC_STAAN (Q7A3S2) Gamma-hemolysin component C precursor|
          Length = 315

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 4   TKSKITNKCGITNHLQKRYLLKRKYHKDTL 93
           T+ K +NK G+T ++Q  ++  +KY+KD L
Sbjct: 48  TEDKTSNKWGVTQNIQFDFVKDKKYNKDAL 77



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>HLGC_STAAM (Q99RL1) Gamma-hemolysin component C precursor|
          Length = 315

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 4   TKSKITNKCGITNHLQKRYLLKRKYHKDTL 93
           T+ K +NK G+T ++Q  ++  +KY+KD L
Sbjct: 48  TEDKTSNKWGVTQNIQFDFVKDKKYNKDAL 77



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>HLGC_STAAC (Q5HDD4) Gamma-hemolysin component C precursor|
          Length = 315

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 4   TKSKITNKCGITNHLQKRYLLKRKYHKDTL 93
           T+ K +NK G+T ++Q  ++  +KY+KD L
Sbjct: 48  TEDKTSNKWGVTQNIQFDFVKDKKYNKDAL 77



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>LUKS_STAAU (P31716) Leukocidin S subunit precursor|
          Length = 315

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 4   TKSKITNKCGITNHLQKRYLLKRKYHKDTL 93
           T+ K +NK G+T ++Q  ++   KY+KD L
Sbjct: 48  TEDKTSNKWGVTQNIQFDFVKDTKYNKDAL 77


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,890,893
Number of Sequences: 219361
Number of extensions: 103563
Number of successful extensions: 246
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 80,573,946
effective HSP length: 6
effective length of database: 79,257,780
effective search space used: 1902186720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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