ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart10e09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL939104.1|SCO939104 Streptomyces coelicolor A3(2) complete genome; segment 1/29 Length = 299050 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Plus Query: 339 gcacgatcgcacccgcgcgcatca 362 |||||||||||||||||||||||| Sbjct: 226297 gcacgatcgcacccgcgcgcatca 226320
>gb|AY722403.1| Drosophila mauritiana paired-type homeodomain protein (unc-4) mRNA, partial cds Length = 1246 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 381 tcggcggcggcggcagcctgagcagc 406 |||||||||||||||||||| ||||| Sbjct: 834 tcggcggcggcggcagcctgggcagc 859
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 370 cggcggccttgtcggcggcggc 391 |||||||||||||||||||||| Sbjct: 1212779 cggcggccttgtcggcggcggc 1212758
>gb|AY033463.1| Zea mays subsp. mays isolate phi121-B73 microsatellite sequence Length = 102 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 376 ccttgtcggcggcggcggcagc 397 |||||||||||||||||||||| Sbjct: 77 ccttgtcggcggcggcggcagc 56
>emb|BX070319.1|CNS09QF7 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC7BE01 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 849 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 382 cggcggcggcggcagcctgagc 403 |||||||||||||||||||||| Sbjct: 322 cggcggcggcggcagcctgagc 301
>emb|BX057772.1|CNS09GQO Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC37DE05 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 805 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 382 cggcggcggcggcagcctgagc 403 |||||||||||||||||||||| Sbjct: 283 cggcggcggcggcagcctgagc 304
>emb|BX057771.1|CNS09GQN Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC37DE05 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 971 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 382 cggcggcggcggcagcctgagc 403 |||||||||||||||||||||| Sbjct: 632 cggcggcggcggcagcctgagc 611
>emb|BX056851.1|CNS09G13 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC36BH11 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 415 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 382 cggcggcggcggcagcctgagc 403 |||||||||||||||||||||| Sbjct: 314 cggcggcggcggcagcctgagc 293
>emb|BX051342.1|CNS09BS2 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC28CE10 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 505 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 382 cggcggcggcggcagcctgagc 403 |||||||||||||||||||||| Sbjct: 298 cggcggcggcggcagcctgagc 319
>emb|BX044800.1|CNS096QC Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC18CF07 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 371 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 382 cggcggcggcggcagcctgagc 403 |||||||||||||||||||||| Sbjct: 288 cggcggcggcggcagcctgagc 309
>emb|BX041788.1|CNS094EO Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC13BG04 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 452 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 382 cggcggcggcggcagcctgagc 403 |||||||||||||||||||||| Sbjct: 293 cggcggcggcggcagcctgagc 314
>emb|BX040939.1|CNS093R3 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC12AB10 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 917 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 382 cggcggcggcggcagcctgagc 403 |||||||||||||||||||||| Sbjct: 297 cggcggcggcggcagcctgagc 318
>emb|BX040435.1|CNS093D3 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC11BB05 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 502 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 382 cggcggcggcggcagcctgagc 403 |||||||||||||||||||||| Sbjct: 264 cggcggcggcggcagcctgagc 285
>emb|BX036297.1|CNS09065 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA8AD02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 465 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 382 cggcggcggcggcagcctgagc 403 |||||||||||||||||||||| Sbjct: 304 cggcggcggcggcagcctgagc 325
>emb|BX034675.1|CNS08YX3 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA50CG09 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 439 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 382 cggcggcggcggcagcctgagc 403 |||||||||||||||||||||| Sbjct: 259 cggcggcggcggcagcctgagc 280
>emb|BX034934.1|CNS08Z4A Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA6AC06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 853 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 382 cggcggcggcggcagcctgagc 403 |||||||||||||||||||||| Sbjct: 766 cggcggcggcggcagcctgagc 745
>emb|BX033937.1|CNS08YCL Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA5CE07 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1024 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 382 cggcggcggcggcagcctgagc 403 |||||||||||||||||||||| Sbjct: 297 cggcggcggcggcagcctgagc 318
>emb|BX030467.1|CNS08VO7 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA45BH06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 321 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 382 cggcggcggcggcagcctgagc 403 |||||||||||||||||||||| Sbjct: 280 cggcggcggcggcagcctgagc 301
>emb|BX030105.1|CNS08VE5 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA44DH01 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 884 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 382 cggcggcggcggcagcctgagc 403 |||||||||||||||||||||| Sbjct: 295 cggcggcggcggcagcctgagc 316
>emb|BX022368.1|CNS08PF8 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA34BA11 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 834 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 382 cggcggcggcggcagcctgagc 403 |||||||||||||||||||||| Sbjct: 317 cggcggcggcggcagcctgagc 338
>emb|BX022756.1|CNS08PQ0 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA34DC02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 445 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 382 cggcggcggcggcagcctgagc 403 |||||||||||||||||||||| Sbjct: 282 cggcggcggcggcagcctgagc 303
>emb|BX022547.1|CNS08PK7 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA34CA11 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 477 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 382 cggcggcggcggcagcctgagc 403 |||||||||||||||||||||| Sbjct: 279 cggcggcggcggcagcctgagc 300
>emb|BX022149.1|CNS08P95 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA32DF12 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1020 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 382 cggcggcggcggcagcctgagc 403 |||||||||||||||||||||| Sbjct: 939 cggcggcggcggcagcctgagc 918
>emb|BX020403.1|CNS08NWN Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA30AB10 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 448 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 382 cggcggcggcggcagcctgagc 403 |||||||||||||||||||||| Sbjct: 287 cggcggcggcggcagcctgagc 308
>emb|BX017509.1|CNS08LO9 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA26BH05 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 467 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 382 cggcggcggcggcagcctgagc 403 |||||||||||||||||||||| Sbjct: 309 cggcggcggcggcagcctgagc 330
>emb|BX008450.1|CNS08EOM Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA13DF01 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 923 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 382 cggcggcggcggcagcctgagc 403 |||||||||||||||||||||| Sbjct: 275 cggcggcggcggcagcctgagc 296
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 370 cggcggccttgtcggcggcggc 391 |||||||||||||||||||||| Sbjct: 2528799 cggcggccttgtcggcggcggc 2528778
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 370 cggcggccttgtcggcggcggc 391 |||||||||||||||||||||| Sbjct: 234058 cggcggccttgtcggcggcggc 234079
>ref|NM_002699.2| Homo sapiens POU domain, class 3, transcription factor 1 (POU3F1), mRNA Length = 2170 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 458 ctcggccggtgccgcctcctcctgc 482 |||||||||||||||| |||||||| Sbjct: 339 ctcggccggtgccgccgcctcctgc 315
>gb|AE009053.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 79 of 256 of the complete sequence Length = 12282 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 373 cggccttgtcggcggcggcgg 393 ||||||||||||||||||||| Sbjct: 8598 cggccttgtcggcggcggcgg 8618
>gb|BT009023.1| Triticum aestivum clone wdk3c.pk012.h14:fis, full insert mRNA sequence Length = 817 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 382 cggcggcggcggcagcctgagcagc 406 ||||||||||||||||| ||||||| Sbjct: 395 cggcggcggcggcagcccgagcagc 419
>emb|Z18284.1|HSOCT6TR Homo sapiens Oct-6 transcription factor Length = 1733 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 458 ctcggccggtgccgcctcctcctgc 482 |||||||||||||||| |||||||| Sbjct: 526 ctcggccggtgccgccgcctcctgc 502
>gb|DQ322650.2| Streptomyces sp. 44414 plasmid pRL2, complete sequence Length = 20252 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 371 ggcggccttgtcggcggcggc 391 ||||||||||||||||||||| Sbjct: 8317 ggcggccttgtcggcggcggc 8297
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 373 cggccttgtcggcggcggcgg 393 ||||||||||||||||||||| Sbjct: 871352 cggccttgtcggcggcggcgg 871372
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 370 cggcggccttgtcggcggcggcggc 394 |||||||| |||||||||||||||| Sbjct: 24827081 cggcggccatgtcggcggcggcggc 24827057
>dbj|AK109727.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-B09, full insert sequence Length = 1935 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 370 cggcggccttgtcggcggcggcggc 394 |||||||| |||||||||||||||| Sbjct: 1662 cggcggccatgtcggcggcggcggc 1686
>gb|AF068845.1|AF068845 Mycobacteriophage TM4, complete genome Length = 52797 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 421 gcaccgcctcggcggcagcgg 441 ||||||||||||||||||||| Sbjct: 45050 gcaccgcctcggcggcagcgg 45030
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 370 cggcggccttgtcggcggcggcggc 394 |||||||| |||||||||||||||| Sbjct: 24755287 cggcggccatgtcggcggcggcggc 24755263
>emb|AL954829.6|CNS08CD5 Oryza sativa chromosome 12, . BAC OSJNBa0044E20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 140383 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 370 cggcggccttgtcggcggcggcggc 394 |||||||| |||||||||||||||| Sbjct: 134238 cggcggccatgtcggcggcggcggc 134214
>gb|L26494.1|HUMOCT6A Homo sapiens (oct-6) mRNA, complete cds Length = 2170 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 458 ctcggccggtgccgcctcctcctgc 482 |||||||||||||||| |||||||| Sbjct: 339 ctcggccggtgccgccgcctcctgc 315
>gb|AY722402.1| Drosophila simulans paired-type homeodomain protein (unc-4) mRNA, partial cds Length = 1246 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 tcggcggcggcggcagcctg 400 |||||||||||||||||||| Sbjct: 834 tcggcggcggcggcagcctg 853
>ref|XM_450266.1| Oryza sativa (japonica cultivar-group), mRNA Length = 837 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 cggccttgtcggcggcggcg 392 |||||||||||||||||||| Sbjct: 388 cggccttgtcggcggcggcg 369
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 ctcactcggcggccttgtcg 383 |||||||||||||||||||| Sbjct: 2679305 ctcactcggcggccttgtcg 2679286
>gb|AC134047.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052O08 map MAP_LOC, complete sequence Length = 154839 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 370 cggcggccttgtcggcggcggcgg 393 ||||||||| |||||||||||||| Sbjct: 143411 cggcggcctcgtcggcggcggcgg 143388
>gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0009F15, complete sequence Length = 142289 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 370 cggcggccttgtcggcggcggcgg 393 ||||||||| |||||||||||||| Sbjct: 13264 cggcggcctcgtcggcggcggcgg 13241
>gb|AC146936.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1154F06 map near C10769, complete sequence Length = 194856 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 gtcggcggcggcggcagcct 399 |||||||||||||||||||| Sbjct: 96071 gtcggcggcggcggcagcct 96052
>gb|AC146523.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0045D11 map near 50283S, complete sequence Length = 148306 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gccttgtcggcggcggcggc 394 |||||||||||||||||||| Sbjct: 81691 gccttgtcggcggcggcggc 81672
>ref|XM_424174.1| PREDICTED: Gallus gallus similar to bA6J24.4 (A novel protein similar to cell division cycle control protein 37(CDC37)) (LOC426535), partial mRNA Length = 1854 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 aaagagacgaaaacagcctc 69 |||||||||||||||||||| Sbjct: 1121 aaagagacgaaaacagcctc 1102
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 tcggcggccttgtcggcggc 388 |||||||||||||||||||| Sbjct: 32514 tcggcggccttgtcggcggc 32533
>ref|XM_324436.1| Neurospora crassa OR74A predicted protein (NCU05080.1) partial mRNA Length = 219 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 382 cggcggcggcggcagcctgagcag 405 ||||||||||| |||||||||||| Sbjct: 154 cggcggcggcgacagcctgagcag 131
>ref|XM_950976.1| Neurospora crassa OR74A hypothetical protein (NCU05080.1) partial mRNA Length = 219 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 382 cggcggcggcggcagcctgagcag 405 ||||||||||| |||||||||||| Sbjct: 154 cggcggcggcgacagcctgagcag 131
>ref|XM_958001.1| Neurospora crassa OR74A hypothetical protein (NCU06243.1) partial mRNA Length = 1311 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 380 gtcggcggcggcggcagcctgagc 403 |||||||| ||||||||||||||| Sbjct: 402 gtcggcggtggcggcagcctgagc 379
>ref|XM_326097.1| Neurospora crassa OR74A hypothetical protein (NCU06243.1) partial mRNA Length = 1311 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 380 gtcggcggcggcggcagcctgagc 403 |||||||| ||||||||||||||| Sbjct: 402 gtcggcggtggcggcagcctgagc 379
>gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099O15, complete sequence Length = 137357 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 cggcggcggcggcagcctga 401 |||||||||||||||||||| Sbjct: 31589 cggcggcggcggcagcctga 31608
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 gtcggcggcggcggcagcct 399 |||||||||||||||||||| Sbjct: 29043220 gtcggcggcggcggcagcct 29043239
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 gcggccttgtcggcggcggc 391 |||||||||||||||||||| Sbjct: 611293 gcggccttgtcggcggcggc 611312
>gb|BC064076.1| Mus musculus high mobility group AT-hook 2, pseudogene 1, mRNA (cDNA clone IMAGE:1195052), partial cds Length = 1504 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 383 ggcggcggcggcagcctgagcagc 406 ||||||||||||||||| |||||| Sbjct: 571 ggcggcggcggcagcctaagcagc 548
>ref|XM_547747.2| PREDICTED: Canis familiaris similar to CG10889-PA (LOC490625), mRNA Length = 7350 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 gccatggcaatgccacggca 302 |||||||||||||||||||| Sbjct: 2510 gccatggcaatgccacggca 2491
>gb|AC108409.8| Mus musculus chromosome 19, clone RP23-84G7, complete sequence Length = 270854 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 tgaccccatgacatcactga 98 |||||||||||||||||||| Sbjct: 46296 tgaccccatgacatcactga 46277
>gb|AY372935.1| Micrococcus luteus Rpf gene, partial cds Length = 630 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 gcggccttgtcggcggcggc 391 |||||||||||||||||||| Sbjct: 473 gcggccttgtcggcggcggc 454
>gb|AY251554.2| Pseudomonas sp. WBC-3 transposon mph insertion sequence IS6100 transposase (tnpA) gene, complete cds, methyl parathion hydrolase (mpd) and hypothetical protein genes, complete cds, and insertion sequence IS6100 transposase (tnpB) gene, complete cds Length = 6614 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 tgccggcaccgcctcggcgg 435 |||||||||||||||||||| Sbjct: 1421 tgccggcaccgcctcggcgg 1402
>ref|XM_501176.1| Yarrowia lipolytica CLIB122, YALI0B21318g predicted mRNA Length = 1611 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 gcggcggcggcagcctgagc 403 |||||||||||||||||||| Sbjct: 1400 gcggcggcggcagcctgagc 1381
>emb|BX070229.1|CNS09QCP Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC7BA02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 494 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 gcggcggcggcagcctgagc 403 |||||||||||||||||||| Sbjct: 301 gcggcggcggcagcctgagc 320
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 gccggcaccgcctcggcggc 436 |||||||||||||||||||| Sbjct: 2907642 gccggcaccgcctcggcggc 2907623
>emb|BX321880.9| Zebrafish DNA sequence from clone CH211-281G13 in linkage group 1, complete sequence Length = 144139 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 tgagcagctggtgcctctgc 418 |||||||||||||||||||| Sbjct: 47392 tgagcagctggtgcctctgc 47373
>gb|AE006009.1| Caulobacter crescentus CB15 section 335 of 359 of the complete genome Length = 12052 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 371 ggcggccttgtcggcggcggcggc 394 ||||||||||| |||||||||||| Sbjct: 514 ggcggccttgttggcggcggcggc 491
>ref|XM_680354.1| PREDICTED: Danio rerio similar to Serine/threonine-protein kinase 10 (Lymphocyte-oriented kinase), transcript variant 1 (LOC562769), mRNA Length = 3015 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 tgagcagctggtgcctctgc 418 |||||||||||||||||||| Sbjct: 2386 tgagcagctggtgcctctgc 2367
>ref|XM_702852.1| PREDICTED: Danio rerio similar to Serine/threonine-protein kinase 10 (Lymphocyte-oriented kinase), transcript variant 2 (LOC562769), mRNA Length = 2805 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 tgagcagctggtgcctctgc 418 |||||||||||||||||||| Sbjct: 2176 tgagcagctggtgcctctgc 2157
>gb|AC090054.2|AC090054 Oryza sativa chromosome 9 clone PAC0645D04, complete sequence Length = 139050 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 ttgtcggcggcggcggcagc 397 |||||||||||||||||||| Sbjct: 87836 ttgtcggcggcggcggcagc 87817
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 cggccttgtcggcggcggcg 392 |||||||||||||||||||| Sbjct: 2483269 cggccttgtcggcggcggcg 2483288
>ref|NG_001395.1| Mus musculus high mobility group AT-hook 2, pseudogene 1 (Hmga2-ps1) on chromosome 1 Length = 589 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 383 ggcggcggcggcagcctgagcagc 406 ||||||||||||||||| |||||| Sbjct: 21 ggcggcggcggcagcctaagcagc 44
>emb|CR352573.1| Gallus gallus finished cDNA, clone ChEST828l18 Length = 853 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 aaagagacgaaaacagcctc 69 |||||||||||||||||||| Sbjct: 755 aaagagacgaaaacagcctc 736
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gccttgtcggcggcggcggc 394 |||||||||||||||||||| Sbjct: 13948854 gccttgtcggcggcggcggc 13948835 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 370 cggcggccttgtcggcggcggcgg 393 ||||||||| |||||||||||||| Sbjct: 4361901 cggcggcctcgtcggcggcggcgg 4361878
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 ttgtcggcggcggcggcagc 397 |||||||||||||||||||| Sbjct: 5980675 ttgtcggcggcggcggcagc 5980656 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 cggccttgtcggcggcggcg 392 |||||||||||||||||||| Sbjct: 3622983 cggccttgtcggcggcggcg 3623002
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 cggcggcggcggcagcctga 401 |||||||||||||||||||| Sbjct: 23641584 cggcggcggcggcagcctga 23641603
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 gtcggcggcggcggcagcct 399 |||||||||||||||||||| Sbjct: 29134642 gtcggcggcggcggcagcct 29134661
>gb|AC154183.2| Mus musculus BAC clone RP23-474E16 from chromosome 17, complete sequence Length = 181773 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 ccactgacacattattgaag 135 |||||||||||||||||||| Sbjct: 115626 ccactgacacattattgaag 115607
>gb|AC092636.3| Homo sapiens BAC clone RP11-353K11 from 2, complete sequence Length = 199721 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 ggcagcctgagcagctggtg 411 |||||||||||||||||||| Sbjct: 95524 ggcagcctgagcagctggtg 95505
>gb|AC012361.10| Homo sapiens BAC clone RP11-348P18 from 2, complete sequence Length = 207184 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 317 ccaggcaaaggctagctcaggagc 340 |||||| ||||||||||||||||| Sbjct: 167683 ccaggccaaggctagctcaggagc 167706
>gb|AF540993.1| Pseudomonas aeruginosa isolate 2-164 pyoverdin biosynthetic locus, partial sequence Length = 77740 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 cggccttgtcggcggcggcg 392 |||||||||||||||||||| Sbjct: 37465 cggccttgtcggcggcggcg 37484
>gb|AF540992.1| Pseudomonas aeruginosa isolate 1-60 pyoverdin biosynthetic locus, partial sequence Length = 38516 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 cggccttgtcggcggcggcg 392 |||||||||||||||||||| Sbjct: 3002 cggccttgtcggcggcggcg 3021
>dbj|AP006727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0645D04 Length = 142890 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 ttgtcggcggcggcggcagc 397 |||||||||||||||||||| Sbjct: 91606 ttgtcggcggcggcggcagc 91587
>emb|BX072583.7| Zebrafish DNA sequence from clone CH211-185M2 in linkage group 13, complete sequence Length = 154297 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 acccggaacgccactgacacatta 129 |||||||||||| ||||||||||| Sbjct: 53274 acccggaacgcctctgacacatta 53297
>dbj|AP005587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0499G10 Length = 158375 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 cggccttgtcggcggcggcg 392 |||||||||||||||||||| Sbjct: 108758 cggccttgtcggcggcggcg 108777
>dbj|AP005578.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1695_A02 Length = 156214 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 cggccttgtcggcggcggcg 392 |||||||||||||||||||| Sbjct: 31244 cggccttgtcggcggcggcg 31263
>dbj|AK109632.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-D05, full insert sequence Length = 1526 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gccttgtcggcggcggcggc 394 |||||||||||||||||||| Sbjct: 1160 gccttgtcggcggcggcggc 1141
>dbj|AK109545.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-E05, full insert sequence Length = 3015 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 370 cggcggccttgtcggcggcggcgg 393 ||||||||| |||||||||||||| Sbjct: 466 cggcggcctcgtcggcggcggcgg 443
>dbj|AK105291.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-G05, full insert sequence Length = 1527 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 ttgtcggcggcggcggcagc 397 |||||||||||||||||||| Sbjct: 1269 ttgtcggcggcggcggcagc 1250
>gb|AY765263.1| Pseudomonas aeruginosa strain MSH type II pyoverdine region, complete sequence Length = 50406 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 cggccttgtcggcggcggcg 392 |||||||||||||||||||| Sbjct: 14484 cggccttgtcggcggcggcg 14503
>gb|AC169371.2| Sorghum bicolor clone SB_BBc0127F08, complete sequence Length = 70712 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 cggcggccttgtcggcggcg 389 |||||||||||||||||||| Sbjct: 28635 cggcggccttgtcggcggcg 28616
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 gcggccttgtcggcggcggc 391 |||||||||||||||||||| Sbjct: 612742 gcggccttgtcggcggcggc 612761
>gb|L41343.1|MUSHCPB Mus musculus high mobility group I-C (Hmgi-ps) pseudogene, partial sequence Length = 589 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 383 ggcggcggcggcagcctgagcagc 406 ||||||||||||||||| |||||| Sbjct: 21 ggcggcggcggcagcctaagcagc 44
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 gccttgtcggcggcggcggc 394 |||||||||||||||||||| Sbjct: 14030856 gccttgtcggcggcggcggc 14030837 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 370 cggcggccttgtcggcggcggcgg 393 ||||||||| |||||||||||||| Sbjct: 4370595 cggcggcctcgtcggcggcggcgg 4370572
>emb|AL929200.8| Zebrafish DNA sequence from clone CH211-190B21, complete sequence Length = 120682 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 cactgacacattattgaagc 136 |||||||||||||||||||| Sbjct: 80020 cactgacacattattgaagc 80039
>gb|AC167562.5| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940122D9, complete sequence Length = 114898 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 cggcacgcgcacggcgaagc 317 |||||||||||||||||||| Sbjct: 27551 cggcacgcgcacggcgaagc 27570
>emb|AL954698.9| Zebrafish DNA sequence from clone CH211-233B16 in linkage group 6, complete sequence Length = 177161 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 cactgacacattattgaagc 136 |||||||||||||||||||| Sbjct: 166856 cactgacacattattgaagc 166875
>emb|AL928872.7| Zebrafish DNA sequence from clone DKEYP-59A2, complete sequence Length = 200760 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 cactgacacattattgaagc 136 |||||||||||||||||||| Sbjct: 107162 cactgacacattattgaagc 107143
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 gcggcggcggcagcctgagc 403 |||||||||||||||||||| Sbjct: 2792352 gcggcggcggcagcctgagc 2792371
>gb|M63479.1|PSUAFC P.americanus antifreeze protein pseudogene Length = 1236 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 370 cggcggccttgtcggcggcggcgg 393 ||||||||||| |||||||||||| Sbjct: 976 cggcggccttggcggcggcggcgg 953
>gb|M63478.1|PSUAFB P.americanus antifreeze protein pseudogene Length = 1373 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 370 cggcggccttgtcggcggcggcgg 393 ||||||||||| |||||||||||| Sbjct: 1063 cggcggccttggcggcggcggcgg 1040 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,687,607 Number of Sequences: 3902068 Number of extensions: 3687607 Number of successful extensions: 98533 Number of sequences better than 10.0: 100 Number of HSP's better than 10.0 without gapping: 103 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96349 Number of HSP's gapped (non-prelim): 2184 length of query: 493 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 471 effective length of database: 17,147,199,772 effective search space: 8076331092612 effective search space used: 8076331092612 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
