ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart10e07 |
|---|---|
| Clone Library Name | barley_pub |
>HYES_HUMAN (P34913) Epoxide hydrolase 2 (EC 3.3.2.3) (Soluble epoxide| hydrolase) (SEH) (Epoxide hydratase) (Cytosolic epoxide hydrolase) (CEH) Length = 555 Score = 58.9 bits (141), Expect = 8e-09 Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 1/98 (1%) Frame = -3 Query: 502 EKFQKSGFTGPLNYYRNMDMNWRLTAPWHGAKITVPAKFIGGEKDIGVESFGVKSYIESG 323 ++F+KSGF GPLN+YRNM+ NW+ G KI +PA + EKD V S Sbjct: 452 QQFKKSGFRGPLNWYRNMERNWKWACKSLGRKILIPALMVTAEKDF------VLVPQMSQ 505 Query: 322 GFKSNVPDLEVSIIEG-HHFLQQEQAERVNSEILSFLD 212 + +P L+ IE H+ Q ++ VN ++ +LD Sbjct: 506 HMEDWIPHLKRGHIEDCGHWTQMDKPTEVNQILIKWLD 543
>HYES_RAT (P80299) Epoxide hydrolase 2 (EC 3.3.2.3) (Soluble epoxide| hydrolase) (SEH) (Epoxide hydratase) (Cytosolic epoxide hydrolase) (CEH) Length = 554 Score = 57.4 bits (137), Expect = 2e-08 Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 1/97 (1%) Frame = -3 Query: 502 EKFQKSGFTGPLNYYRNMDMNWRLTAPWHGAKITVPAKFIGGEKDIGVESFGVKSYIESG 323 ++F+KSGF GPLN+YRN + NW+ + G KI VPA + EKDI V S Sbjct: 451 QQFKKSGFRGPLNWYRNTERNWKWSCKALGRKILVPALMVTAEKDI------VLRPEMSK 504 Query: 322 GFKSNVPDLEVSIIEG-HHFLQQEQAERVNSEILSFL 215 ++ +P L+ IE H+ Q E+ VN ++ +L Sbjct: 505 NMENWIPFLKRGHIEDCGHWTQIEKPAEVNQILIKWL 541
>HYES_MOUSE (P34914) Epoxide hydrolase 2 (EC 3.3.2.3) (Soluble epoxide| hydrolase) (SEH) (Epoxide hydratase) (Cytosolic epoxide hydrolase) (CEH) Length = 554 Score = 56.2 bits (134), Expect = 5e-08 Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 1/97 (1%) Frame = -3 Query: 502 EKFQKSGFTGPLNYYRNMDMNWRLTAPWHGAKITVPAKFIGGEKDIGVESFGVKSYIESG 323 ++F+K+GF GPLN+YRN + NW+ + G KI VPA + EKDI V S Sbjct: 451 QQFKKTGFRGPLNWYRNTERNWKWSCKGLGRKILVPALMVTAEKDI------VLRPEMSK 504 Query: 322 GFKSNVPDLEVSIIEG-HHFLQQEQAERVNSEILSFL 215 + +P L+ IE H+ Q E+ VN ++ +L Sbjct: 505 NMEKWIPFLKRGHIEDCGHWTQIEKPTEVNQILIKWL 541
>HYES_PIG (Q6Q2C2) Epoxide hydrolase 2 (EC 3.3.2.3) (Soluble epoxide| hydrolase) (SEH) (Epoxide hydratase) (Cytosolic epoxide hydrolase) (CEH) Length = 555 Score = 53.9 bits (128), Expect = 2e-07 Identities = 22/46 (47%), Positives = 31/46 (67%) Frame = -3 Query: 502 EKFQKSGFTGPLNYYRNMDMNWRLTAPWHGAKITVPAKFIGGEKDI 365 ++F+KSGF GPLN+YRNM+ NW+ G KI +PA + E D+ Sbjct: 452 QQFKKSGFRGPLNWYRNMERNWQWGCKGSGRKILIPALMVTAENDL 497
>CCD53_HUMAN (Q9Y3C0) Coiled-coil domain-containing protein 53| Length = 194 Score = 31.6 bits (70), Expect = 1.3 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = +2 Query: 290 YLKVWNIGLETPAFDVALNSEGLDPDVLLTPD 385 YLK+ +G+ A + SEGLDPD+L PD Sbjct: 139 YLKMVQVGVPVMAIRNKMISEGLDPDLLERPD 170
>HEPA_HHV7J (P52376) DNA helicase/primase complex-associated protein| Length = 659 Score = 30.4 bits (67), Expect = 2.9 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 4/87 (4%) Frame = -3 Query: 469 LNYYRNMDMNWRLTAPWHGAKITVPAKFIGGEKDIGVESFGVKSYIESGGFK----SNVP 302 LN R MD+NW H FIG +KD V +K+ +ES K S P Sbjct: 436 LNACRLMDLNWMFIRNMH------IVYFIGPKKDPSVVLPLLKTSVESCWKKILNSSRTP 489 Query: 301 DLEVSIIEGHHFLQQEQAERVNSEILS 221 + ++ I G++FL + + +I S Sbjct: 490 VVNINYIPGYNFLHSSCSFLTSGDINS 516
>DXR_PSEF5 (Q4KHH0) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 396 Score = 30.4 bits (67), Expect = 2.9 Identities = 15/54 (27%), Positives = 28/54 (51%) Frame = -1 Query: 411 QRSRCLQNSSGVRRTSGSSPSELRATSKAGVSSPMFQTLRYPSLKATISSSKSR 250 QR CL+ + S+P+ L A ++ VS+ + + +RYP + + I +R Sbjct: 311 QRFPCLRLARQAAEAGNSAPAMLNAANEVAVSAFLERRIRYPEIASIIDEVLTR 364
>YEEP_ECOLI (P76359) Hypothetical protein yeeP| Length = 236 Score = 30.0 bits (66), Expect = 3.7 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = +3 Query: 195 SSPENLSRKDSISEFTLSACSCWRKWWPSMMDTSRSGTLDLKPPLSM 335 S P R+ ++ + L + +R+WWP+ + SG D+ P L + Sbjct: 17 SEPVKCKRRTTLGKSLLFSRVLYREWWPATYCSRVSGYRDILPELDL 63
>DXR_PSEAE (Q9KGU6) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 396 Score = 30.0 bits (66), Expect = 3.7 Identities = 15/54 (27%), Positives = 29/54 (53%) Frame = -1 Query: 411 QRSRCLQNSSGVRRTSGSSPSELRATSKAGVSSPMFQTLRYPSLKATISSSKSR 250 QR CL+ +S T GS+P+ L A ++ V++ + + +R+ + I +R Sbjct: 311 QRFPCLRLASQAAETGGSAPAMLNAANEVAVAAFLERHIRFSDIAVIIEDVLNR 364
>CCD53_MOUSE (Q9CR27) Coiled-coil domain-containing protein 53| Length = 194 Score = 30.0 bits (66), Expect = 3.7 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +2 Query: 290 YLKVWNIGLETPAFDVALNSEGLDPDVLLTPD 385 YLK+ +G+ A + SEGLDP++L PD Sbjct: 139 YLKMVQVGVPVMAIRDKMISEGLDPELLEKPD 170
>DPP5_ASPOR (Q9Y8E3) Dipeptidyl-peptidase 5 precursor (EC 3.4.14.-)| (Dipeptidyl-peptidase V) (DPP V) (DppV) (Alanyl dipeptidyl peptidase) Length = 725 Score = 30.0 bits (66), Expect = 3.7 Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 4/108 (3%) Frame = -3 Query: 496 FQKSGFTGPLNYYRNMDMNWRLTAPWHGAKITVPAKFIGGEKDIGV---ESFGVKSYIES 326 F + F G R W +AP K + P I + D + E + + ++ Sbjct: 604 FMQHEFNGTFWDNRENYRRWDPSAPERILKFSTPMLIIHSDLDYRLPVSEGLSLFNILQE 663 Query: 325 GGFKSNVPDLEVSIIEGHHFLQQEQAERV-NSEILSFLDKFSGEEAHN 185 G VP ++ + +H++Q ++ V + ++L +L+K+SG E N Sbjct: 664 RG----VPSRFLNFPDENHWVQNKENSLVWHQQVLGWLNKYSGVEESN 707
>SAMD6_HUMAN (Q68DC2) Sterile alpha motif domain-containing protein 6 (Ankyrin| repeat domain-containing protein 14) Length = 871 Score = 29.3 bits (64), Expect = 6.4 Identities = 24/70 (34%), Positives = 34/70 (48%) Frame = -1 Query: 387 SSGVRRTSGSSPSELRATSKAGVSSPMFQTLRYPSLKATISSSKSRPRG*TLRYCPSWTS 208 SS V GSSPSEL A S AG S+P+ + L + +S+ S+ TL PS Sbjct: 687 SSPVGPAPGSSPSELPA-SPAGGSAPVGKKLETSKRPPSGTSTTSKSTSPTLTPSPSPKG 745 Query: 207 FLARKRITKN 178 A ++ + Sbjct: 746 HTAESSVSSS 755
>LEPA_DEHSC (Q3ZXK4) GTP-binding protein lepA| Length = 605 Score = 28.9 bits (63), Expect = 8.3 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -3 Query: 436 RLTAPWHGAKITVPAKFIGGEKDIGVESFGV 344 R+ PW I P+K+IG D+ E++GV Sbjct: 400 RIEEPWVSVVIITPSKYIGTVMDLVRENYGV 430
>FGF14_RAT (Q8R5L7) Fibroblast growth factor 14 (FGF-14)| Length = 247 Score = 28.9 bits (63), Expect = 8.3 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 8/78 (10%) Frame = +2 Query: 197 LARKLVQEGQYLRVHPLGLLLLEEMVAFNDGYLKVWNIGLETPAFD-------VALNSEG 355 + R ++G YL++HP G L + + N + +GL A +A+N EG Sbjct: 72 VTRLYCRQGYYLQMHPDGALDGTKDDSTNSTLFNLIPVGLRVVAIQGVKTGLYIAMNGEG 131 Query: 356 -LDPDVLLTPDEFCRHRD 406 L P L TP+ C+ ++ Sbjct: 132 YLYPSELFTPE--CKFKE 147
>FGF14_MOUSE (P70379) Fibroblast growth factor 14 (FGF-14) (Fibroblast growth| factor homologous factor 4) (FHF-4) Length = 247 Score = 28.9 bits (63), Expect = 8.3 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 8/78 (10%) Frame = +2 Query: 197 LARKLVQEGQYLRVHPLGLLLLEEMVAFNDGYLKVWNIGLETPAFD-------VALNSEG 355 + R ++G YL++HP G L + + N + +GL A +A+N EG Sbjct: 72 VTRLYCRQGYYLQMHPDGALDGTKDDSTNSTLFNLIPVGLRVVAIQGVKTGLYIAMNGEG 131 Query: 356 -LDPDVLLTPDEFCRHRD 406 L P L TP+ C+ ++ Sbjct: 132 YLYPSELFTPE--CKFKE 147
>FGF14_HUMAN (Q92915) Fibroblast growth factor 14 (FGF-14) (Fibroblast growth| factor homologous factor 4) (FHF-4) Length = 247 Score = 28.9 bits (63), Expect = 8.3 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 8/78 (10%) Frame = +2 Query: 197 LARKLVQEGQYLRVHPLGLLLLEEMVAFNDGYLKVWNIGLETPAFD-------VALNSEG 355 + R ++G YL++HP G L + + N + +GL A +A+N EG Sbjct: 72 VTRLYCRQGYYLQMHPDGALDGTKDDSTNSTLFNLIPVGLRVVAIQGVKTGLYIAMNGEG 131 Query: 356 -LDPDVLLTPDEFCRHRD 406 L P L TP+ C+ ++ Sbjct: 132 YLYPSELFTPE--CKFKE 147
>HXB7_BOVIN (Q9TT89) Homeobox protein Hox-B7| Length = 217 Score = 28.9 bits (63), Expect = 8.3 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +1 Query: 121 SSLHYPFTQFSVMRLLTSLVLSYALPRQKTCPGRTVSQSSPSRPALAGGNG 273 SSL+Y FS +S+ + A P Q +C S+P RP G+G Sbjct: 2 SSLYYANALFSKYPAASSVFATGAFPEQTSC----AFASNPQRPGYGAGSG 48 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,915,196 Number of Sequences: 219361 Number of extensions: 1573725 Number of successful extensions: 4450 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4343 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4450 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3696665728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
